Wall clock time and date at job start Tue Mar 31 2020 14:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47199 * 2 1 4 4 C 1.35360 * 116.99990 * 179.97438 * 3 2 1 5 5 N 1.30545 * 125.44436 * 179.97438 * 4 3 2 6 6 C 1.36328 * 108.38352 * 180.02562 * 5 4 3 7 7 C 1.47373 * 126.41625 * 179.97438 * 6 5 4 8 8 O 1.21626 * 120.00171 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99832 * 0.02880 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.53006 * 109.46711 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47445 * 59.99695 * 13 12 10 15 15 C 1.53002 * 109.47092 * 300.00075 * 14 13 12 16 16 H 1.09002 * 109.47067 * 299.99853 * 15 14 13 17 17 N 1.46500 * 109.46766 * 180.02562 * 15 14 13 18 18 C 1.36937 * 120.00410 * 85.00153 * 17 15 14 19 19 H 1.08000 * 119.99361 * 359.97438 * 18 17 15 20 20 C 1.38801 * 120.00292 * 179.97438 * 18 17 15 21 21 N 1.31626 * 120.00297 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00422 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46609 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47207 * 119.99716 * 22 20 18 25 25 H 1.48498 * 109.47533 * 240.00299 * 22 20 18 26 26 C 1.53000 * 109.46840 * 155.00060 * 10 9 7 27 27 C 1.35917 * 107.17081 * 0.23046 * 6 5 4 28 28 O 1.34192 * 125.44632 * 0.04239 * 4 3 2 29 29 H 1.09008 * 109.47306 * 300.00675 * 1 2 3 30 30 H 1.09007 * 109.46824 * 60.00098 * 1 2 3 31 31 H 1.08993 * 109.47391 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47200 * 239.99852 * 2 1 3 33 33 H 1.09001 * 109.47058 * 119.99514 * 2 1 3 34 34 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 36 36 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 37 37 H 1.09001 * 109.46726 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.46589 * 299.99365 * 13 12 10 39 39 H 1.09002 * 109.47045 * 59.99942 * 14 13 12 40 40 H 1.09000 * 109.47140 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99491 * 264.99884 * 17 15 14 42 42 H 0.96993 * 120.00252 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.47194 * 299.99493 * 26 10 9 44 44 H 1.08992 * 109.47399 * 59.99666 * 26 10 9 45 45 H 1.08004 * 126.45658 * 179.74842 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9594 2.6781 0.0001 6 6 5.3039 2.4523 0.0004 7 6 6.3631 3.4770 -0.0005 8 8 7.5325 3.1428 -0.0007 9 7 6.0358 4.7844 -0.0010 10 6 7.0888 5.8030 -0.0024 11 1 7.9348 5.4503 -0.5922 12 6 7.5438 6.0681 1.4342 13 6 8.6430 7.1324 1.4328 14 6 8.0996 8.4261 0.8229 15 6 7.6446 8.1609 -0.6136 16 1 8.4907 7.8086 -1.2035 17 7 7.1249 9.3999 -1.1977 18 6 7.9831 10.2977 -1.7745 19 1 9.0431 10.0925 -1.7984 20 6 7.4906 11.4712 -2.3283 21 7 6.1986 11.7211 -2.2996 22 14 8.6613 12.6963 -3.1146 23 1 10.0519 12.1843 -3.0175 24 1 8.2995 12.8800 -4.5430 25 1 8.5634 13.9985 -2.4076 26 6 6.5458 7.0969 -0.6123 27 6 5.4845 1.1052 -0.0043 28 8 4.2630 0.5427 0.0003 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.1032 5.0509 -0.0012 35 1 6.6977 6.4209 2.0240 36 1 7.9306 5.1464 1.8687 37 1 8.9668 7.3215 2.4562 38 1 9.4891 6.7799 0.8428 39 1 7.2535 8.7784 1.4129 40 1 8.8826 9.1844 0.8224 41 1 6.1728 9.5842 -1.1758 42 1 5.8544 12.5410 -2.6869 43 1 6.2216 6.9081 -1.6357 44 1 5.6998 7.4496 -0.0225 45 1 6.4308 0.5846 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981199824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:28 Heat of formation + Delta-G solvation = -74.907622 kcal Electronic energy + Delta-G solvation = -26754.573652 eV Core-core repulsion = 22773.097820 eV Total energy + Delta-G solvation = -3981.475832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.56474 -41.04991 -39.98922 -39.23227 -36.26628 -36.09632 -34.76845 -32.95849 -32.84603 -31.00909 -30.37314 -29.37558 -25.84427 -25.53926 -24.54745 -23.63033 -23.12659 -22.40257 -21.48575 -20.95729 -20.08933 -19.12396 -18.66033 -18.32712 -17.50590 -17.34965 -16.62721 -16.45780 -16.12767 -16.01084 -15.80995 -15.40595 -15.10897 -15.00985 -14.80808 -14.52473 -14.16688 -13.92943 -13.60392 -13.56540 -13.39665 -12.90329 -12.84132 -12.67634 -12.55505 -12.25656 -12.14913 -12.01264 -11.96754 -11.91550 -11.80250 -11.64743 -11.64051 -11.38520 -11.09142 -10.87002 -10.15580 -9.75811 -8.98895 -7.92662 -5.20770 0.00895 0.82620 0.88824 1.47993 1.48344 1.58477 1.64521 2.04037 2.16962 2.57493 3.28864 3.40759 3.63582 3.71122 3.86754 3.92699 3.95117 4.03807 4.07352 4.25405 4.27572 4.32174 4.37032 4.45656 4.52999 4.58662 4.64428 4.68361 4.77291 4.83821 4.86682 5.03315 5.11677 5.18228 5.18772 5.24102 5.36657 5.42004 5.51960 5.54543 5.62759 5.67308 6.27624 6.30570 6.55873 7.04608 7.35834 8.11822 8.35274 9.31072 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.002253 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.346467 B =12424.876424 C =13435.618385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.258 6.258 4 C 0.385 3.615 5 N -0.485 5.485 6 C -0.077 4.077 7 C 0.605 3.395 8 O -0.560 6.560 9 N -0.700 5.700 10 C 0.158 3.842 11 H 0.080 0.920 12 C -0.117 4.117 13 C -0.105 4.105 14 C -0.127 4.127 15 C 0.178 3.822 16 H 0.041 0.959 17 N -0.737 5.737 18 C -0.234 4.234 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.295 1.295 25 H -0.294 1.294 26 C -0.116 4.116 27 C 0.031 3.969 28 O -0.215 6.215 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 -29.442 8.385 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.167 6.167 4 C 0.138 3.862 5 N -0.231 5.231 6 C -0.195 4.195 7 C 0.391 3.609 8 O -0.440 6.440 9 N -0.349 5.349 10 C 0.054 3.946 11 H 0.098 0.902 12 C -0.155 4.155 13 C -0.143 4.143 14 C -0.167 4.167 15 C 0.069 3.931 16 H 0.059 0.941 17 N -0.376 5.376 18 C -0.366 4.366 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.800 3.200 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.222 1.222 26 C -0.155 4.155 27 C -0.042 4.042 28 O -0.106 6.106 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.250 0.750 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.204 0.796 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -7.381 -28.946 8.306 31.006 hybrid contribution -0.168 0.609 -0.611 0.879 sum -7.549 -28.337 7.695 30.318 Atomic orbital electron populations 1.21869 0.89940 1.05082 1.03809 1.23438 0.97859 0.77721 1.04198 1.86429 1.07979 1.33357 1.88911 1.23313 0.84174 0.81435 0.97297 1.71021 1.04395 1.22905 1.24799 1.21552 0.89854 0.94745 1.13384 1.16820 0.86209 0.82025 0.75871 1.90815 1.18870 1.81809 1.52494 1.45903 1.11328 1.04836 1.72804 1.20887 0.89954 0.86325 0.97471 0.90231 1.21828 0.99219 0.99109 0.95371 1.21411 0.97646 0.93856 1.01410 1.22103 1.00108 0.97252 0.97278 1.20305 0.94530 0.85447 0.92810 0.94115 1.42606 1.06642 1.19483 1.68876 1.19645 0.90889 0.98235 1.27823 0.90704 1.25538 0.97434 1.00629 1.03479 1.69823 1.12784 1.26914 1.52606 0.85107 0.78685 0.78848 0.77365 1.19065 1.22195 1.22155 1.21879 0.99070 0.93751 1.00825 1.25609 0.86642 0.92052 0.99865 1.84431 1.16049 1.38577 1.71525 0.91336 0.91480 0.86983 0.89690 0.89528 0.75028 0.91224 0.91417 0.90400 0.91806 0.93068 0.93724 0.79573 0.94134 0.92260 0.91118 0.71513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 71.98 0.74 -0.02 16 2 C 0.04 0.34 6.38 71.98 0.46 0.80 16 3 O -0.26 -4.46 10.19 -64.30 -0.66 -5.12 16 4 C 0.38 7.78 8.98 130.43 1.17 8.96 16 5 N -0.48 -12.00 11.10 -419.40 -4.65 -16.65 16 6 C -0.08 -1.80 6.99 40.31 0.28 -1.52 16 7 C 0.60 16.40 7.78 86.65 0.67 17.08 16 8 O -0.56 -17.37 16.55 -4.11 -0.07 -17.44 16 9 N -0.70 -18.61 5.07 -445.83 -2.26 -20.87 16 10 C 0.16 4.53 2.45 44.99 0.11 4.64 16 11 H 0.08 2.49 7.58 -2.39 -0.02 2.47 16 12 C -0.12 -3.06 5.50 30.60 0.17 -2.89 16 13 C -0.10 -2.86 5.92 30.60 0.18 -2.68 16 14 C -0.13 -4.48 5.50 30.59 0.17 -4.31 16 15 C 0.18 7.06 2.77 44.98 0.12 7.18 16 16 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 17 N -0.74 -37.47 5.12 -323.01 -1.65 -39.12 16 18 C -0.23 -13.13 9.93 84.03 0.83 -12.30 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 21 N -0.97 -60.12 13.06 21.65 0.28 -59.83 16 22 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 25 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 26 C -0.12 -3.85 4.86 30.58 0.15 -3.71 16 27 C 0.03 0.50 11.93 67.28 0.80 1.30 16 28 O -0.22 -3.45 10.20 19.03 0.19 -3.25 16 29 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.41 10.43 8.33 -92.71 -0.77 9.66 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.37 20.31 7.80 -92.71 -0.72 19.59 16 42 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.27 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -71.87 378.76 -0.94 -72.81 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.48 Total: 32.13 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 6.33 Total: 8.43 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -8.29 Total: -136.48 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.53 Total: -25.81 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -71.87 -0.94 -72.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981199824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.102 kcal (2) G-P(sol) polarization free energy of solvation -71.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds