Wall clock time and date at job start Tue Mar 31 2020 14:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47188 * 2 1 4 4 C 1.35726 * 116.99762 * 180.02562 * 3 2 1 5 5 C 1.41854 * 126.78331 * 180.30902 * 4 3 2 6 6 C 1.36671 * 103.81154 * 180.11449 * 5 4 3 7 7 C 1.47540 * 126.88230 * 179.87206 * 6 5 4 8 8 O 1.21585 * 119.99780 * 359.71355 * 7 6 5 9 9 N 1.34778 * 119.99995 * 179.70801 * 7 6 5 10 10 C 1.46497 * 119.99664 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47182 * 35.00355 * 10 9 7 12 12 C 1.52999 * 109.47704 * 275.00456 * 10 9 7 13 13 C 1.53006 * 109.46626 * 300.00272 * 12 10 9 14 14 C 1.52997 * 109.47127 * 299.99539 * 13 12 10 15 15 C 1.53002 * 109.46817 * 60.00361 * 14 13 12 16 16 H 1.08996 * 109.47407 * 60.00219 * 15 14 13 17 17 N 1.46507 * 109.46688 * 179.97438 * 15 14 13 18 18 C 1.36933 * 120.00173 * 274.99450 * 17 15 14 19 19 H 1.08000 * 119.99754 * 0.02562 * 18 17 15 20 20 C 1.38806 * 120.00419 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99723 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00263 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47442 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47322 * 120.00159 * 22 20 18 25 25 H 1.48500 * 109.47257 * 240.00174 * 22 20 18 26 26 C 1.52996 * 109.46972 * 299.99733 * 15 14 13 27 27 O 1.34659 * 106.23678 * 359.61031 * 6 5 4 28 28 N 1.20876 * 111.63531 * 0.26398 * 27 6 5 29 29 H 1.09003 * 109.47094 * 299.99739 * 1 2 3 30 30 H 1.09000 * 109.47343 * 59.99386 * 1 2 3 31 31 H 1.09001 * 109.47480 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46571 * 240.00294 * 2 1 3 33 33 H 1.08995 * 109.46896 * 120.00720 * 2 1 3 34 34 H 1.07997 * 128.09970 * 359.97438 * 5 4 3 35 35 H 0.96991 * 119.99867 * 0.02562 * 9 7 6 36 36 H 1.08993 * 109.47839 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47160 * 59.99903 * 12 10 9 38 38 H 1.09001 * 109.46801 * 59.99811 * 13 12 10 39 39 H 1.09001 * 109.46998 * 179.97438 * 13 12 10 40 40 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 41 41 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 42 42 H 0.96998 * 120.00008 * 95.00488 * 17 15 14 43 43 H 0.97001 * 120.00197 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.46993 * 180.02562 * 26 15 14 45 45 H 1.09000 * 109.47380 * 299.99696 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0452 2.7626 0.0055 6 6 5.3625 2.3986 -0.0007 7 6 6.5304 3.3003 -0.0008 8 8 6.3680 4.5053 -0.0003 9 7 7.7771 2.7883 -0.0014 10 6 8.9366 3.6837 -0.0021 11 1 8.7100 4.5721 0.5874 12 6 9.2627 4.0949 -1.4393 13 6 9.5807 2.8478 -2.2668 14 6 10.7837 2.1248 -1.6577 15 6 10.4576 1.7137 -0.2205 16 1 9.5949 1.0475 -0.2200 17 7 11.6094 1.0208 0.3624 18 6 11.7770 -0.3224 0.1555 19 1 11.0604 -0.8709 -0.4377 20 6 12.8679 -0.9790 0.7082 21 7 13.7410 -0.3106 1.4316 22 14 13.0969 -2.8112 0.4254 23 1 11.9865 -3.3248 -0.4163 24 1 14.3905 -3.0477 -0.2646 25 1 13.0962 -3.5176 1.7316 26 6 10.1396 2.9607 0.6069 27 8 5.3812 1.0522 -0.0006 28 7 4.2638 0.5910 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.6294 3.7593 0.0110 35 1 7.9065 1.8271 -0.0021 36 1 10.1256 4.7607 -1.4399 37 1 8.4057 4.6100 -1.8732 38 1 8.7179 2.1817 -2.2662 39 1 9.8126 3.1406 -3.2908 40 1 11.0106 1.2366 -2.2475 41 1 11.6464 2.7910 -1.6583 42 1 12.2531 1.5135 0.8950 43 1 14.5035 -0.7693 1.8176 44 1 9.9077 2.6678 1.6309 45 1 11.0023 3.6268 0.6065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981230112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:20 Heat of formation + Delta-G solvation = -7.183514 kcal Electronic energy + Delta-G solvation = -27379.321934 eV Core-core repulsion = 23400.782840 eV Total energy + Delta-G solvation = -3978.539094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.21341 -40.23089 -39.31477 -38.07674 -34.64330 -33.78641 -33.26836 -32.15693 -31.49340 -31.17056 -29.64414 -27.91220 -25.01848 -23.83894 -23.65608 -23.35125 -22.09952 -21.23261 -20.98287 -19.43162 -18.86915 -18.20564 -17.22589 -17.17758 -16.31356 -16.26597 -15.85885 -15.46202 -14.95233 -14.84469 -14.43703 -14.26879 -13.81614 -13.78658 -13.50878 -13.47038 -13.10388 -13.08310 -12.52800 -12.31197 -12.13114 -11.98155 -11.80501 -11.56833 -11.53900 -11.02152 -10.90921 -10.82137 -10.49879 -10.38760 -10.22066 -10.16774 -10.11572 -9.78516 -9.60734 -9.56436 -9.11999 -8.89473 -6.99050 -5.79301 -3.08263 0.53586 1.83737 2.27841 2.39218 2.82212 3.20765 3.41838 3.48018 3.49830 3.81317 4.40616 4.48736 4.54754 4.56612 4.65875 4.81049 4.91164 4.97178 5.02096 5.11465 5.19269 5.32475 5.40438 5.44690 5.53130 5.57022 5.64274 5.69047 5.80669 5.91960 6.00748 6.03508 6.14636 6.24633 6.42706 6.48370 6.54008 6.63401 6.67637 6.91029 7.04933 7.25179 7.68414 7.77856 7.89839 8.39071 9.50659 10.07419 10.41730 11.43285 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.002977 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.466416 B = 9403.429124 C =11151.571824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.205 3.795 5 C -0.157 4.157 6 C -0.055 4.055 7 C 0.604 3.396 8 O -0.515 6.515 9 N -0.697 5.697 10 C 0.151 3.849 11 H 0.090 0.910 12 C -0.129 4.129 13 C -0.117 4.117 14 C -0.137 4.137 15 C 0.179 3.821 16 H 0.043 0.957 17 N -0.724 5.724 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.135 4.135 27 O 0.122 5.878 28 N -0.388 5.388 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.190 0.810 35 H 0.411 0.589 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.072 0.928 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.653 6.650 -4.073 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.008 3.992 5 C -0.180 4.180 6 C -0.121 4.121 7 C 0.387 3.613 8 O -0.391 6.391 9 N -0.349 5.349 10 C 0.047 3.953 11 H 0.108 0.892 12 C -0.167 4.167 13 C -0.156 4.156 14 C -0.178 4.178 15 C 0.068 3.932 16 H 0.061 0.939 17 N -0.364 5.364 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.173 4.173 27 O 0.055 5.945 28 N -0.111 5.111 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.207 0.793 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.045 6.187 -4.094 23.260 hybrid contribution 0.275 -0.871 -0.014 0.913 sum -21.770 5.316 -4.109 22.783 Atomic orbital electron populations 1.21798 0.92084 1.03293 1.03674 1.22862 0.95948 0.80427 1.02638 1.86211 1.12923 1.30401 1.89321 1.21842 0.85908 0.90458 1.01024 1.22154 0.90066 0.99229 1.06543 1.24158 0.96663 0.84420 1.06854 1.16475 0.81201 0.86020 0.77652 1.90868 1.84959 1.12773 1.50518 1.46166 1.04729 1.11864 1.72171 1.21123 0.84146 0.92863 0.97214 0.89180 1.21921 1.01609 0.98325 0.94836 1.21529 0.99096 0.96505 0.98426 1.22294 0.96582 0.99840 0.99052 1.20170 0.91361 0.91005 0.90621 0.93924 1.42417 1.26114 1.06718 1.61198 1.19263 1.06400 0.84834 1.26393 0.91115 1.24737 0.97712 0.97993 1.00500 1.69666 1.14751 1.34931 1.38698 0.86152 0.77508 0.85443 0.77302 1.20522 1.21925 1.21897 1.22153 0.96401 0.98639 1.00146 1.84998 1.22802 1.18533 1.68183 1.74037 0.90414 1.22095 1.24543 0.91315 0.91333 0.89874 0.91427 0.91404 0.79321 0.75108 0.90714 0.91891 0.92576 0.92671 0.91971 0.92468 0.78228 0.93568 0.90948 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.06 0.46 6.38 37.16 0.24 0.70 16 3 O -0.28 -3.02 10.21 -18.88 -0.19 -3.21 16 4 C 0.20 2.43 8.00 -16.72 -0.13 2.30 16 5 C -0.16 -1.74 10.97 -38.77 -0.43 -2.17 16 6 C -0.05 -0.65 7.29 -36.36 -0.26 -0.92 16 7 C 0.60 7.71 7.78 -12.47 -0.10 7.61 16 8 O -0.51 -7.65 16.57 5.29 0.09 -7.57 16 9 N -0.70 -8.55 4.23 -54.85 -0.23 -8.78 16 10 C 0.15 1.89 2.78 -67.93 -0.19 1.70 16 11 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 12 C -0.13 -1.56 5.60 -26.73 -0.15 -1.71 16 13 C -0.12 -1.54 5.77 -26.73 -0.15 -1.69 16 14 C -0.14 -2.25 5.50 -26.73 -0.15 -2.40 16 15 C 0.18 3.17 2.60 -67.93 -0.18 3.00 16 16 H 0.04 0.76 6.44 -51.93 -0.33 0.43 16 17 N -0.72 -17.03 5.12 -53.43 -0.27 -17.30 16 18 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 22 Si 0.90 22.00 29.55 -169.99 -5.02 16.98 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 26 C -0.13 -1.97 5.08 -26.73 -0.14 -2.10 16 27 O 0.12 1.53 11.03 15.51 0.17 1.70 16 28 N -0.39 -4.99 11.50 30.47 0.35 -4.64 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.41 4.96 6.69 -40.82 -0.27 4.69 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.38 9.68 7.80 -40.82 -0.32 9.36 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -30.79 374.06 -7.01 -37.80 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.76 Total: 9.27 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.50 Total: -3.08 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.57 Total: -57.52 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.07 Total: -9.08 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.79 -7.01 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981230112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.617 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds