Wall clock time and date at job start Tue Mar 31 2020 14:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.46886 * 2 1 4 4 C 1.35736 * 116.99893 * 180.02562 * 3 2 1 5 5 C 1.41852 * 126.79008 * 180.32595 * 4 3 2 6 6 C 1.36661 * 103.81202 * 180.13394 * 5 4 3 7 7 C 1.47546 * 126.87714 * 179.87394 * 6 5 4 8 8 O 1.21581 * 119.99775 * 359.71026 * 7 6 5 9 9 N 1.34773 * 119.99808 * 179.71379 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46722 * 324.72200 * 10 9 7 12 12 C 1.52995 * 109.47182 * 84.72073 * 10 9 7 13 13 C 1.52996 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47258 * 299.99882 * 13 12 10 15 15 C 1.52998 * 109.46851 * 59.99809 * 14 13 12 16 16 H 1.08997 * 109.47198 * 60.00475 * 15 14 13 17 17 N 1.46505 * 109.46718 * 180.02562 * 15 14 13 18 18 C 1.36945 * 119.99716 * 274.99654 * 17 15 14 19 19 H 1.07999 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.38806 * 119.99440 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00685 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99768 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47237 * 90.00309 * 22 20 18 24 24 H 1.48501 * 109.47433 * 210.00124 * 22 20 18 25 25 H 1.48500 * 109.47059 * 330.00315 * 22 20 18 26 26 C 1.52996 * 109.47346 * 300.00138 * 15 14 13 27 27 O 1.34655 * 106.24028 * 359.61543 * 6 5 4 28 28 N 1.20868 * 111.63661 * 0.25821 * 27 6 5 29 29 H 1.08997 * 109.47687 * 300.00519 * 1 2 3 30 30 H 1.09004 * 109.47236 * 60.00702 * 1 2 3 31 31 H 1.09006 * 109.47563 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47245 * 239.99179 * 2 1 3 33 33 H 1.09004 * 109.46793 * 119.99597 * 2 1 3 34 34 H 1.08002 * 128.09046 * 0.02562 * 5 4 3 35 35 H 0.97005 * 120.00161 * 359.72203 * 9 7 6 36 36 H 1.09007 * 109.47360 * 299.99766 * 12 10 9 37 37 H 1.08997 * 109.47379 * 60.00113 * 12 10 9 38 38 H 1.09008 * 109.47401 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.47741 * 59.99690 * 13 12 10 40 40 H 1.09008 * 109.46926 * 300.00538 * 14 13 12 41 41 H 1.08992 * 109.47480 * 180.02562 * 14 13 12 42 42 H 0.96999 * 120.00129 * 95.00498 * 17 15 14 43 43 H 0.97002 * 120.00189 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.47248 * 300.00307 * 26 15 14 45 45 H 1.09005 * 109.46905 * 179.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0452 2.7627 0.0058 6 6 5.3624 2.3987 -0.0009 7 6 6.5302 3.3005 -0.0010 8 8 6.3678 4.5054 0.0001 9 7 7.7769 2.7885 -0.0024 10 6 8.9365 3.6839 -0.0019 11 1 8.7110 4.5707 -0.5942 12 6 9.2599 4.0988 1.4348 13 6 10.4705 5.0344 1.4352 14 6 11.6749 4.3103 0.8301 15 6 11.3514 3.8953 -0.6066 16 1 11.1255 4.7820 -1.1988 17 7 12.5045 3.2014 -1.1857 18 6 13.5182 3.9204 -1.7609 19 1 13.4678 4.9989 -1.7872 20 6 14.6104 3.2629 -2.3101 21 7 14.6715 1.9485 -2.2785 22 14 15.9935 4.2436 -3.0940 23 1 17.0173 4.5637 -2.0670 24 1 16.6148 3.4428 -4.1793 25 1 15.4482 5.5040 -3.6590 26 6 10.1408 2.9597 -0.6070 27 8 5.3811 1.0523 -0.0016 28 7 4.2639 0.5911 -0.0013 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.6293 3.7594 0.0124 35 1 7.9065 1.8271 0.0008 36 1 8.4020 4.6151 1.8657 37 1 9.4854 3.2120 2.0271 38 1 10.7012 5.3297 2.4588 39 1 10.2447 5.9211 0.8429 40 1 11.9008 3.4234 1.4223 41 1 12.5374 4.9766 0.8308 42 1 12.5498 2.2328 -1.1619 43 1 15.4346 1.4891 -2.6626 44 1 10.3667 2.0730 -0.0148 45 1 9.9102 2.6645 -1.6306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981230113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:23 Heat of formation + Delta-G solvation = -10.083468 kcal Electronic energy + Delta-G solvation = -26699.835007 eV Core-core repulsion = 22721.170162 eV Total energy + Delta-G solvation = -3978.664846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.31702 -40.13380 -39.40008 -38.05605 -34.90199 -33.87215 -33.47902 -32.28918 -31.58009 -31.14710 -29.43267 -27.82989 -25.05701 -23.87890 -23.72374 -23.40357 -22.00251 -21.36412 -20.61862 -19.91569 -18.93921 -18.30865 -17.29708 -17.09363 -16.47675 -16.38026 -16.18712 -15.20559 -15.06135 -14.76445 -14.42445 -14.12730 -13.93366 -13.81513 -13.57852 -13.53685 -13.20352 -13.15056 -12.75416 -12.38750 -12.20715 -12.12600 -11.69725 -11.61729 -11.04339 -11.00875 -10.88566 -10.76460 -10.64704 -10.40724 -10.25575 -10.20291 -10.17504 -9.80679 -9.70155 -9.65285 -9.17535 -8.88306 -6.97409 -5.77690 -3.06503 0.44284 1.74275 2.19172 2.28378 2.74348 3.09685 3.43392 3.48984 3.50258 3.71702 4.31947 4.41077 4.48590 4.56305 4.57090 4.73074 4.82359 4.92014 5.01392 5.11983 5.25626 5.26027 5.33171 5.46732 5.50927 5.55981 5.62886 5.67479 5.82804 5.92081 5.97131 6.09418 6.17040 6.28224 6.40947 6.49486 6.54984 6.56287 6.69576 6.94179 7.09993 7.15488 7.67933 7.70137 7.81254 8.40902 9.52248 10.09174 10.43757 11.44902 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024953 B = 0.002081 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.843203 B =13453.290411 C =14125.632187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.156 4.156 6 C -0.054 4.054 7 C 0.604 3.396 8 O -0.509 6.509 9 N -0.704 5.704 10 C 0.148 3.852 11 H 0.093 0.907 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.184 3.816 16 H 0.049 0.951 17 N -0.724 5.724 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.131 4.131 27 O 0.118 5.882 28 N -0.390 5.390 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.190 0.810 35 H 0.408 0.592 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.067 0.933 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.504 -2.476 7.556 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.009 3.991 5 C -0.179 4.179 6 C -0.121 4.121 7 C 0.386 3.614 8 O -0.384 6.384 9 N -0.353 5.353 10 C 0.044 3.956 11 H 0.111 0.889 12 C -0.164 4.164 13 C -0.153 4.153 14 C -0.178 4.178 15 C 0.073 3.927 16 H 0.067 0.933 17 N -0.364 5.364 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.170 4.170 27 O 0.052 5.948 28 N -0.114 5.114 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.208 0.792 35 H 0.243 0.757 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.778 -2.607 7.441 26.956 hybrid contribution 0.652 0.135 -0.372 0.763 sum -25.125 -2.472 7.069 26.218 Atomic orbital electron populations 1.21801 0.92030 1.03320 1.03745 1.22863 0.96012 0.80392 1.02565 1.86225 1.12886 1.30426 1.89245 1.21848 0.85919 0.90449 1.00839 1.22184 0.90098 0.99306 1.06271 1.24166 0.96692 0.84332 1.06892 1.16475 0.81131 0.86071 0.77713 1.90894 1.84820 1.12765 1.49918 1.46107 1.05002 1.11453 1.72776 1.21207 0.83642 0.93269 0.97477 0.88862 1.21907 0.98607 1.00099 0.95819 1.21486 0.94946 0.98220 1.00653 1.22307 0.96776 1.00011 0.98726 1.20095 0.86438 0.93941 0.92219 0.93252 1.42397 1.19225 1.06056 1.68751 1.19244 0.97334 0.90905 1.29434 0.91110 1.24735 0.98803 0.95570 1.01846 1.69657 1.31353 1.06145 1.50997 0.86207 0.82455 0.78878 0.78757 1.21750 1.21826 1.20750 1.22119 0.94077 0.99621 1.01155 1.84958 1.22868 1.18581 1.68404 1.74013 0.90425 1.22089 1.24829 0.91299 0.91269 0.89853 0.91422 0.91462 0.79248 0.75721 0.91984 0.91746 0.92364 0.92059 0.92586 0.91816 0.78293 0.93537 0.91399 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.28 37.15 0.38 -0.33 16 2 C 0.06 0.41 6.38 37.15 0.24 0.64 16 3 O -0.28 -2.75 10.21 -18.92 -0.19 -2.95 16 4 C 0.21 2.23 8.00 -16.72 -0.13 2.09 16 5 C -0.16 -1.59 10.97 -38.77 -0.43 -2.02 16 6 C -0.05 -0.59 7.29 -36.36 -0.26 -0.85 16 7 C 0.60 7.24 7.78 -12.47 -0.10 7.14 16 8 O -0.51 -7.51 16.58 5.29 0.09 -7.42 16 9 N -0.70 -7.71 5.08 -54.84 -0.28 -7.99 16 10 C 0.15 1.88 2.45 -67.93 -0.17 1.72 16 11 H 0.09 1.31 7.59 -51.93 -0.39 0.92 16 12 C -0.13 -1.55 5.49 -26.74 -0.15 -1.70 16 13 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 14 C -0.14 -2.30 5.50 -26.73 -0.15 -2.45 16 15 C 0.18 3.40 2.77 -67.93 -0.19 3.21 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 17 N -0.72 -17.35 5.12 -53.43 -0.27 -17.62 16 18 C -0.24 -6.44 9.93 -15.06 -0.15 -6.58 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 22 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.13 -1.93 4.86 -26.73 -0.13 -2.06 16 27 O 0.12 1.27 11.03 15.52 0.17 1.44 16 28 N -0.39 -4.42 11.50 30.47 0.35 -4.07 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.41 3.66 8.43 -40.82 -0.34 3.32 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.38 9.76 7.80 -40.82 -0.32 9.44 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -31.28 378.50 -7.16 -38.43 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.94 Total: 7.70 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.48 Total: -3.36 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.52 Total: -56.65 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.93 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.28 -7.16 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981230113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.349 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds