Wall clock time and date at job start Tue Mar 31 2020 14:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.46882 * 2 1 4 4 C 1.35734 * 117.00176 * 180.02562 * 3 2 1 5 5 C 1.41850 * 126.78530 * 180.02562 * 4 3 2 6 6 C 1.36665 * 103.80792 * 180.02562 * 5 4 3 7 7 C 1.47551 * 126.87888 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99915 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99719 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99686 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47068 * 324.99893 * 10 9 7 12 12 C 1.53002 * 109.47411 * 84.99974 * 10 9 7 13 13 C 1.52996 * 109.46972 * 59.99834 * 12 10 9 14 14 C 1.53001 * 109.47486 * 60.00463 * 13 12 10 15 15 C 1.53002 * 109.46637 * 299.99742 * 14 13 12 16 16 H 1.08993 * 109.47662 * 299.99908 * 15 14 13 17 17 N 1.46504 * 109.46876 * 179.97438 * 15 14 13 18 18 C 1.36942 * 119.99382 * 85.00530 * 17 15 14 19 19 H 1.08000 * 120.00211 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99769 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99915 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47220 * 59.99712 * 22 20 18 24 24 H 1.48500 * 109.47143 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.47059 * 299.99510 * 22 20 18 26 26 C 1.52997 * 109.47212 * 204.99833 * 10 9 7 27 27 O 1.34659 * 106.24189 * 0.26550 * 6 5 4 28 28 N 1.20874 * 111.63188 * 359.52199 * 27 6 5 29 29 H 1.08996 * 109.46852 * 299.99464 * 1 2 3 30 30 H 1.08999 * 109.47157 * 59.99943 * 1 2 3 31 31 H 1.09003 * 109.46679 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46601 * 240.00475 * 2 1 3 33 33 H 1.08995 * 109.47671 * 120.00594 * 2 1 3 34 34 H 1.07997 * 128.09810 * 0.05753 * 5 4 3 35 35 H 0.97000 * 120.00680 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.47407 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.46986 * 300.00092 * 12 10 9 38 38 H 1.09001 * 109.46993 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.47298 * 300.00176 * 13 12 10 40 40 H 1.08996 * 109.46778 * 59.99584 * 14 13 12 41 41 H 1.08992 * 109.47514 * 179.97438 * 14 13 12 42 42 H 0.96998 * 120.00342 * 264.99717 * 17 15 14 43 43 H 0.97001 * 120.00197 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.47533 * 59.99637 * 26 10 9 45 45 H 1.08996 * 109.47853 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0451 2.7628 -0.0001 6 6 5.3624 2.3989 -0.0016 7 6 6.5302 3.3007 -0.0024 8 8 6.3678 4.5056 -0.0013 9 7 7.7769 2.7887 -0.0043 10 6 8.9364 3.6842 -0.0046 11 1 8.7088 4.5732 -0.5928 12 6 9.2648 4.0938 1.4325 13 6 9.5843 2.8460 2.2581 14 6 10.7864 2.1236 1.6465 15 6 10.4579 1.7140 0.2093 16 1 9.5953 1.0478 0.2095 17 7 11.6091 1.0228 -0.3766 18 6 11.7781 -0.3206 -0.1716 19 1 11.0631 -0.8704 0.4224 20 6 12.8692 -0.9755 -0.7263 21 7 13.7409 -0.3053 -1.4497 22 14 13.1002 -2.8078 -0.4461 23 1 11.9282 -3.5427 -0.9859 24 1 14.3318 -3.2632 -1.1396 25 1 13.2241 -3.0742 1.0096 26 6 10.1385 2.9619 -0.6163 27 8 5.3811 1.0524 -0.0087 28 7 4.2639 0.5912 -0.0021 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 3.6292 3.7595 0.0015 35 1 7.9065 1.8274 -0.0048 36 1 10.1272 4.7604 1.4323 37 1 8.4085 4.6084 1.8684 38 1 9.8178 3.1377 3.2821 39 1 8.7216 2.1797 2.2583 40 1 11.6490 2.7898 1.6463 41 1 11.0142 1.2349 2.2349 42 1 12.2515 1.5167 -0.9098 43 1 14.5031 -0.7629 -1.8376 44 1 9.9046 2.6700 -1.6401 45 1 11.0011 3.6282 -0.6169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981230114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:26 Heat of formation + Delta-G solvation = -6.989513 kcal Electronic energy + Delta-G solvation = -27378.735385 eV Core-core repulsion = 23400.204703 eV Total energy + Delta-G solvation = -3978.530682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.21340 -40.23013 -39.31351 -38.07525 -34.63957 -33.78580 -33.26585 -32.15566 -31.49207 -31.16839 -29.64251 -27.90849 -25.01714 -23.83494 -23.65398 -23.34902 -22.09789 -21.23037 -20.98089 -19.43043 -18.86705 -18.20495 -17.22316 -17.17557 -16.30984 -16.26760 -15.85721 -15.45988 -14.94871 -14.84507 -14.43414 -14.26871 -13.81568 -13.78438 -13.51794 -13.46974 -13.10277 -13.06745 -12.52784 -12.31115 -12.12661 -11.97997 -11.80266 -11.56760 -11.53843 -11.01895 -10.88084 -10.81712 -10.49653 -10.38676 -10.23044 -10.21260 -10.11514 -9.78367 -9.60662 -9.55931 -9.11766 -8.88264 -6.98890 -5.78692 -3.07758 0.53714 1.83816 2.27919 2.39297 2.82341 3.20876 3.43003 3.47877 3.48360 3.81425 4.40682 4.48810 4.55124 4.56670 4.65981 4.81107 4.91257 4.97339 5.02241 5.11664 5.19323 5.32552 5.40505 5.44856 5.53341 5.57078 5.64493 5.69237 5.80818 5.92124 6.00966 6.03694 6.14819 6.24827 6.42843 6.48568 6.54260 6.63476 6.67885 6.91284 7.05253 7.25326 7.67716 7.77942 7.89942 8.39685 9.51066 10.07835 10.42191 11.43736 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.002976 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.370924 B = 9406.377561 C =11153.722768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.205 3.795 5 C -0.157 4.157 6 C -0.055 4.055 7 C 0.604 3.396 8 O -0.515 6.515 9 N -0.697 5.697 10 C 0.150 3.850 11 H 0.090 0.910 12 C -0.128 4.128 13 C -0.117 4.117 14 C -0.137 4.137 15 C 0.179 3.821 16 H 0.043 0.957 17 N -0.724 5.724 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.135 4.135 27 O 0.122 5.878 28 N -0.388 5.388 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.190 0.810 35 H 0.411 0.589 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.072 0.928 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.587 6.618 4.075 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.008 3.992 5 C -0.180 4.180 6 C -0.121 4.121 7 C 0.387 3.613 8 O -0.391 6.391 9 N -0.349 5.349 10 C 0.047 3.953 11 H 0.108 0.892 12 C -0.167 4.167 13 C -0.156 4.156 14 C -0.178 4.178 15 C 0.069 3.931 16 H 0.061 0.939 17 N -0.364 5.364 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.173 4.173 27 O 0.055 5.945 28 N -0.111 5.111 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.207 0.793 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.962 6.156 4.088 23.172 hybrid contribution 0.254 -0.877 0.030 0.913 sum -21.708 5.279 4.118 22.717 Atomic orbital electron populations 1.21798 0.92083 1.03292 1.03672 1.22863 0.95948 0.80428 1.02637 1.86211 1.12925 1.30400 1.89324 1.21844 0.85907 0.90459 1.01027 1.22151 0.90067 0.99226 1.06546 1.24161 0.96665 0.84421 1.06849 1.16473 0.81199 0.86017 0.77654 1.90865 1.84955 1.12777 1.50520 1.46169 1.04730 1.11868 1.72166 1.21126 0.84150 0.92865 0.97208 0.89182 1.21919 1.01605 0.98320 0.94843 1.21527 0.99098 0.96498 0.98427 1.22294 0.96586 0.99844 0.99047 1.20169 0.91361 0.91007 0.90608 0.93930 1.42402 1.26238 1.06682 1.61100 1.19177 1.06492 0.84856 1.26545 0.91225 1.24735 0.97683 0.97977 1.00468 1.69645 1.14807 1.35112 1.38511 0.86296 0.77082 0.85411 0.77563 1.21237 1.21741 1.21293 1.22155 0.96406 0.98642 1.00136 1.84998 1.22807 1.18533 1.68177 1.74037 0.90416 1.22095 1.24541 0.91329 0.91319 0.89876 0.91406 0.91430 0.79320 0.75106 0.90717 0.91900 0.92675 0.92577 0.92470 0.91975 0.78220 0.93461 0.90953 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.45 16 2 C 0.06 0.46 6.38 37.16 0.24 0.70 16 3 O -0.28 -3.02 10.21 -18.91 -0.19 -3.21 16 4 C 0.20 2.43 8.00 -16.72 -0.13 2.30 16 5 C -0.16 -1.75 10.97 -38.77 -0.43 -2.17 16 6 C -0.05 -0.65 7.29 -36.35 -0.26 -0.92 16 7 C 0.60 7.71 7.78 -12.47 -0.10 7.62 16 8 O -0.51 -7.66 16.57 5.30 0.09 -7.57 16 9 N -0.70 -8.56 4.23 -54.84 -0.23 -8.79 16 10 C 0.15 1.89 2.78 -67.93 -0.19 1.70 16 11 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 12 C -0.13 -1.56 5.60 -26.73 -0.15 -1.71 16 13 C -0.12 -1.54 5.76 -26.73 -0.15 -1.70 16 14 C -0.14 -2.26 5.50 -26.73 -0.15 -2.40 16 15 C 0.18 3.18 2.60 -67.92 -0.18 3.00 16 16 H 0.04 0.76 6.44 -51.93 -0.33 0.43 16 17 N -0.72 -17.04 5.12 -53.42 -0.27 -17.32 16 18 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 22 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.13 -1.97 5.08 -26.73 -0.14 -2.10 16 27 O 0.12 1.53 11.03 15.51 0.17 1.70 16 28 N -0.39 -4.99 11.50 30.47 0.35 -4.64 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.41 4.97 6.69 -40.82 -0.27 4.70 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.38 9.69 7.80 -40.82 -0.32 9.37 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -30.75 374.06 -7.01 -37.76 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.76 Total: 9.37 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.50 Total: -3.11 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.57 Total: -57.55 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.75 -7.01 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981230114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.768 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds