Wall clock time and date at job start Tue Mar 31 2020 14:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.46882 * 2 1 4 4 C 1.35734 * 117.00176 * 180.02562 * 3 2 1 5 5 C 1.41850 * 126.78530 * 180.02562 * 4 3 2 6 6 C 1.36665 * 103.80792 * 180.02562 * 5 4 3 7 7 C 1.47551 * 126.87888 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99915 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99719 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99686 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47068 * 324.99893 * 10 9 7 12 12 C 1.53002 * 109.47411 * 84.99974 * 10 9 7 13 13 C 1.52996 * 109.46972 * 59.99834 * 12 10 9 14 14 C 1.53001 * 109.47486 * 60.00463 * 13 12 10 15 15 C 1.53002 * 109.46637 * 299.99742 * 14 13 12 16 16 H 1.08993 * 109.47662 * 299.99908 * 15 14 13 17 17 N 1.46504 * 109.46876 * 179.97438 * 15 14 13 18 18 C 1.36942 * 119.99382 * 85.00530 * 17 15 14 19 19 H 1.08000 * 120.00211 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99769 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99915 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47220 * 59.99712 * 22 20 18 24 24 H 1.48500 * 109.47143 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.47059 * 299.99510 * 22 20 18 26 26 C 1.52997 * 109.47212 * 204.99833 * 10 9 7 27 27 O 1.34659 * 106.24189 * 0.26550 * 6 5 4 28 28 N 1.20874 * 111.63188 * 359.52199 * 27 6 5 29 29 H 1.08996 * 109.46852 * 299.99464 * 1 2 3 30 30 H 1.08999 * 109.47157 * 59.99943 * 1 2 3 31 31 H 1.09003 * 109.46679 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46601 * 240.00475 * 2 1 3 33 33 H 1.08995 * 109.47671 * 120.00594 * 2 1 3 34 34 H 1.07997 * 128.09810 * 0.05753 * 5 4 3 35 35 H 0.97000 * 120.00680 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.47407 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.46986 * 300.00092 * 12 10 9 38 38 H 1.09001 * 109.46993 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.47298 * 300.00176 * 13 12 10 40 40 H 1.08996 * 109.46778 * 59.99584 * 14 13 12 41 41 H 1.08992 * 109.47514 * 179.97438 * 14 13 12 42 42 H 0.96998 * 120.00342 * 264.99717 * 17 15 14 43 43 H 0.97001 * 120.00197 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.47533 * 59.99637 * 26 10 9 45 45 H 1.08996 * 109.47853 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0451 2.7628 -0.0001 6 6 5.3624 2.3989 -0.0016 7 6 6.5302 3.3007 -0.0024 8 8 6.3678 4.5056 -0.0013 9 7 7.7769 2.7887 -0.0043 10 6 8.9364 3.6842 -0.0046 11 1 8.7088 4.5732 -0.5928 12 6 9.2648 4.0938 1.4325 13 6 9.5843 2.8460 2.2581 14 6 10.7864 2.1236 1.6465 15 6 10.4579 1.7140 0.2093 16 1 9.5953 1.0478 0.2095 17 7 11.6091 1.0228 -0.3766 18 6 11.7781 -0.3206 -0.1716 19 1 11.0631 -0.8704 0.4224 20 6 12.8692 -0.9755 -0.7263 21 7 13.7409 -0.3053 -1.4497 22 14 13.1002 -2.8078 -0.4461 23 1 11.9282 -3.5427 -0.9859 24 1 14.3318 -3.2632 -1.1396 25 1 13.2241 -3.0742 1.0096 26 6 10.1385 2.9619 -0.6163 27 8 5.3811 1.0524 -0.0087 28 7 4.2639 0.5912 -0.0021 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 3.6292 3.7595 0.0015 35 1 7.9065 1.8274 -0.0048 36 1 10.1272 4.7604 1.4323 37 1 8.4085 4.6084 1.8684 38 1 9.8178 3.1377 3.2821 39 1 8.7216 2.1797 2.2583 40 1 11.6490 2.7898 1.6463 41 1 11.0142 1.2349 2.2349 42 1 12.2515 1.5167 -0.9098 43 1 14.5031 -0.7629 -1.8376 44 1 9.9046 2.6700 -1.6401 45 1 11.0011 3.6282 -0.6169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981230114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:25 Heat of formation + Delta-G solvation = -28.230507 kcal Electronic energy + Delta-G solvation = -27379.656463 eV Core-core repulsion = 23400.204703 eV Total energy + Delta-G solvation = -3979.451760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.14426 -41.31754 -40.10870 -39.29493 -36.19563 -34.75217 -34.49054 -33.20741 -32.79206 -32.15930 -30.83662 -29.47828 -25.96162 -25.58847 -24.56983 -24.20438 -23.24720 -22.48629 -21.99167 -20.48038 -20.03215 -19.13972 -19.09784 -18.04440 -17.34556 -17.03616 -16.96128 -16.75077 -16.30054 -15.90143 -15.73002 -15.42255 -15.04934 -14.99943 -14.77924 -14.70014 -14.09735 -13.88242 -13.55868 -13.51845 -13.16332 -13.01466 -12.93224 -12.86076 -12.75585 -12.37791 -12.23878 -12.15264 -12.05186 -11.91720 -11.59026 -11.52460 -11.39631 -11.04737 -10.97655 -10.81107 -10.48092 -10.15089 -8.95048 -7.90267 -5.17418 -0.40677 0.92902 1.43337 1.47897 1.49495 1.51196 1.56988 1.83029 2.25296 2.58979 2.93516 3.43148 3.56437 3.63742 3.79243 3.90326 3.91035 3.92256 3.95721 4.08058 4.25948 4.33267 4.33771 4.39368 4.54218 4.59970 4.69470 4.75477 4.78367 4.84700 4.85834 4.92852 5.13468 5.14366 5.21085 5.28341 5.37080 5.43059 5.55003 5.58998 5.69162 5.83983 6.22818 6.32569 6.80634 6.92611 7.38882 8.16394 8.37986 9.32927 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.002976 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.370924 B = 9406.377561 C =11153.722768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.287 6.287 4 C 0.202 3.798 5 C -0.149 4.149 6 C -0.060 4.060 7 C 0.612 3.388 8 O -0.534 6.534 9 N -0.695 5.695 10 C 0.158 3.842 11 H 0.099 0.901 12 C -0.123 4.123 13 C -0.108 4.108 14 C -0.128 4.128 15 C 0.173 3.827 16 H 0.044 0.956 17 N -0.737 5.737 18 C -0.232 4.232 19 H 0.075 0.925 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.965 3.035 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.280 1.280 26 C -0.123 4.123 27 O 0.114 5.886 28 N -0.403 5.403 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.208 0.792 35 H 0.413 0.587 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.038 0.962 42 H 0.373 0.627 43 H 0.249 0.751 44 H 0.065 0.935 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.518 7.060 4.903 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.194 6.194 4 C 0.005 3.995 5 C -0.171 4.171 6 C -0.126 4.126 7 C 0.395 3.605 8 O -0.412 6.412 9 N -0.346 5.346 10 C 0.054 3.946 11 H 0.116 0.884 12 C -0.161 4.161 13 C -0.146 4.146 14 C -0.169 4.169 15 C 0.065 3.935 16 H 0.062 0.938 17 N -0.376 5.376 18 C -0.364 4.364 19 H 0.093 0.907 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.795 3.205 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.207 1.207 26 C -0.162 4.162 27 O 0.048 5.952 28 N -0.127 5.127 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.225 0.775 35 H 0.250 0.750 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.205 0.795 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.942 6.604 4.949 25.324 hybrid contribution 0.750 -0.997 -0.201 1.264 sum -23.192 5.607 4.748 24.328 Atomic orbital electron populations 1.21823 0.89904 1.04654 1.03867 1.23113 0.97651 0.79355 1.02467 1.86230 1.12205 1.31898 1.89093 1.22034 0.86384 0.90552 1.00517 1.22427 0.89638 0.99834 1.05220 1.24041 0.96717 0.84249 1.07608 1.16418 0.81252 0.85735 0.77048 1.90858 1.85226 1.13545 1.51566 1.46135 1.04675 1.11883 1.71927 1.21049 0.83189 0.92694 0.97656 0.88352 1.21889 1.02370 0.97879 0.93965 1.21438 0.97412 0.96649 0.99096 1.22113 0.97991 0.99102 0.97647 1.20422 0.89397 0.92038 0.91656 0.93770 1.42617 1.27584 1.06040 1.61352 1.19548 1.05769 0.86318 1.24814 0.90721 1.25469 0.98127 1.01841 1.01420 1.69794 1.15458 1.36388 1.40382 0.85328 0.76647 0.81042 0.77471 1.20513 1.22523 1.20651 1.21996 0.97602 0.97293 0.99261 1.84979 1.22810 1.18794 1.68590 1.74020 0.90703 1.22687 1.25325 0.91073 0.91142 0.87917 0.91652 0.91549 0.77470 0.74983 0.89604 0.91155 0.91254 0.92257 0.93078 0.94311 0.79535 0.94229 0.91651 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 71.98 0.74 -0.61 16 2 C 0.05 0.74 6.38 71.98 0.46 1.20 16 3 O -0.29 -5.81 10.21 -90.58 -0.92 -6.74 16 4 C 0.20 4.57 8.00 85.78 0.69 5.25 16 5 C -0.15 -3.06 10.97 22.80 0.25 -2.81 16 6 C -0.06 -1.35 7.29 24.36 0.18 -1.18 16 7 C 0.61 14.59 7.78 86.70 0.67 15.26 16 8 O -0.53 -14.82 16.57 -3.96 -0.07 -14.88 16 9 N -0.69 -15.92 4.23 -445.70 -1.88 -17.80 16 10 C 0.16 3.66 2.78 44.99 0.13 3.79 16 11 H 0.10 2.22 7.58 -2.39 -0.02 2.20 16 12 C -0.12 -2.66 5.60 30.59 0.17 -2.49 16 13 C -0.11 -2.60 5.76 30.59 0.18 -2.42 16 14 C -0.13 -4.10 5.50 30.60 0.17 -3.93 16 15 C 0.17 6.06 2.60 44.99 0.12 6.18 16 16 H 0.04 1.54 6.44 -2.39 -0.02 1.53 16 17 N -0.74 -34.92 5.12 -322.92 -1.65 -36.57 16 18 C -0.23 -12.41 9.93 84.03 0.83 -11.58 16 19 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 20 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.97 -58.33 13.06 21.65 0.28 -58.04 16 22 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 26 C -0.12 -3.46 5.08 30.60 0.16 -3.30 16 27 O 0.11 2.77 11.03 65.67 0.72 3.50 16 28 N -0.40 -10.04 11.50 -172.03 -1.98 -12.02 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 32 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.21 3.36 8.06 -2.91 -0.02 3.33 16 35 H 0.41 9.44 6.69 -92.71 -0.62 8.82 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.41 7.60 -2.38 -0.02 1.39 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.37 19.15 7.80 -92.71 -0.72 18.42 16 43 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -65.40 374.06 1.40 -64.00 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.32 Total: 31.41 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.20 Total: -0.47 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -5.24 Total: -124.44 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.27 Total: -18.12 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -65.40 1.40 -64.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981230114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.767 kcal (2) G-P(sol) polarization free energy of solvation -65.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds