Wall clock time and date at job start Tue Mar 31 2020 14:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46742 * 2 1 4 4 C 1.35723 * 116.99887 * 180.02562 * 3 2 1 5 5 C 1.41857 * 126.78462 * 180.02562 * 4 3 2 6 6 C 1.36670 * 103.80972 * 180.02562 * 5 4 3 7 7 C 1.47544 * 126.87926 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99984 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00019 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99914 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47097 * 34.99981 * 10 9 7 12 12 C 1.52997 * 109.47204 * 274.99487 * 10 9 7 13 13 C 1.53002 * 109.47092 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46963 * 60.00194 * 13 12 10 15 15 C 1.53000 * 109.46886 * 299.99499 * 14 13 12 16 16 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.36940 * 119.99991 * 85.00591 * 17 15 14 19 19 H 1.07998 * 119.99825 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00230 * 180.02562 * 18 17 15 21 21 N 1.31613 * 119.99954 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47017 * 59.99561 * 22 20 18 24 24 H 1.48501 * 109.46738 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47076 * 299.99387 * 22 20 18 26 26 C 1.53002 * 109.47233 * 60.00670 * 15 14 13 27 27 O 1.34662 * 106.24112 * 0.22381 * 6 5 4 28 28 N 1.20874 * 111.63004 * 359.59077 * 27 6 5 29 29 H 1.08996 * 109.47598 * 59.99708 * 1 2 3 30 30 H 1.09000 * 109.46708 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47246 * 299.99758 * 1 2 3 32 32 H 1.08991 * 109.46852 * 240.00257 * 2 1 3 33 33 H 1.08996 * 109.46976 * 119.99859 * 2 1 3 34 34 H 1.07997 * 128.09734 * 359.97438 * 5 4 3 35 35 H 0.96995 * 119.99814 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47045 * 299.99966 * 12 10 9 37 37 H 1.09000 * 109.47140 * 59.99873 * 12 10 9 38 38 H 1.09000 * 109.46497 * 180.02562 * 13 12 10 39 39 H 1.09002 * 109.47067 * 299.99853 * 13 12 10 40 40 H 1.09001 * 109.46652 * 179.97438 * 14 13 12 41 41 H 1.08992 * 109.47514 * 59.99933 * 14 13 12 42 42 H 0.97002 * 120.00410 * 264.99761 * 17 15 14 43 43 H 0.97001 * 120.00026 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47075 * 59.99068 * 26 15 14 45 45 H 1.08996 * 109.47407 * 180.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5252 -0.0005 5 6 4.0450 2.7629 -0.0001 6 6 5.3624 2.3989 -0.0016 7 6 6.5301 3.3008 -0.0024 8 8 6.3677 4.5056 -0.0022 9 7 7.7769 2.7889 -0.0043 10 6 8.9363 3.6843 -0.0057 11 1 8.7102 4.5725 0.5843 12 6 9.2612 4.0959 -1.4430 13 6 10.4725 5.0306 -1.4445 14 6 11.6758 4.3068 -0.8370 15 6 11.3510 3.8953 0.6004 16 1 11.1252 4.7836 1.1905 17 7 12.5034 3.2029 1.1823 18 6 13.5165 3.9231 1.7568 19 1 13.4661 5.0017 1.7805 20 6 14.6087 3.2671 2.3077 21 7 14.6704 1.9527 2.2784 22 14 15.9911 4.2497 3.0908 23 1 15.4507 5.0543 4.2159 24 1 17.0309 3.3207 3.6016 25 1 16.5902 5.1552 2.0777 26 6 10.1397 2.9606 0.6020 27 8 5.3811 1.0525 -0.0077 28 7 4.2638 0.5913 -0.0020 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6291 3.7596 0.0003 35 1 7.9064 1.8276 -0.0048 36 1 9.4874 3.2077 -2.0330 37 1 8.4037 4.6111 -1.8761 38 1 10.7036 5.3241 -2.4685 39 1 10.2468 5.9188 -0.8544 40 1 12.5389 4.9726 -0.8384 41 1 11.9016 3.4187 -1.4270 42 1 12.5488 2.2341 1.1609 43 1 15.4334 1.4943 2.6638 44 1 10.3654 2.0724 0.0118 45 1 9.9080 2.6678 1.6260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981230115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:29 Heat of formation + Delta-G solvation = -9.995984 kcal Electronic energy + Delta-G solvation = -26699.646502 eV Core-core repulsion = 22720.985450 eV Total energy + Delta-G solvation = -3978.661052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.31434 -40.13358 -39.40115 -38.05485 -34.90117 -33.87135 -33.47760 -32.28809 -31.58014 -31.14629 -29.43108 -27.82877 -25.05698 -23.87739 -23.72180 -23.40251 -22.00233 -21.36255 -20.61801 -19.91592 -18.93764 -18.30770 -17.29705 -17.09173 -16.47565 -16.38044 -16.18665 -15.20288 -15.06402 -14.76388 -14.42361 -14.12708 -13.93286 -13.81424 -13.57770 -13.53640 -13.20214 -13.14882 -12.75173 -12.38746 -12.20592 -12.12567 -11.69656 -11.61774 -11.04194 -11.00562 -10.87737 -10.75997 -10.64601 -10.40274 -10.26859 -10.20695 -10.18328 -9.80875 -9.70111 -9.64948 -9.17388 -8.87798 -6.97336 -5.77367 -3.06183 0.44291 1.74338 2.19211 2.28446 2.74399 3.09770 3.44175 3.48851 3.49471 3.71721 4.31966 4.41127 4.48571 4.56412 4.57233 4.73107 4.82388 4.92107 5.01514 5.12029 5.25644 5.26112 5.33230 5.46886 5.50947 5.56065 5.63010 5.67513 5.82923 5.92264 5.97301 6.09515 6.17087 6.28344 6.41078 6.49621 6.55033 6.56437 6.69733 6.94338 7.10181 7.15552 7.67967 7.69863 7.81305 8.41259 9.52477 10.09444 10.44043 11.45179 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.002081 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.743133 B =13452.202412 C =14122.830264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.156 4.156 6 C -0.054 4.054 7 C 0.604 3.396 8 O -0.509 6.509 9 N -0.704 5.704 10 C 0.148 3.852 11 H 0.093 0.907 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.184 3.816 16 H 0.049 0.951 17 N -0.724 5.724 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.131 4.131 27 O 0.118 5.882 28 N -0.390 5.390 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.190 0.810 35 H 0.408 0.592 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.067 0.933 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.463 -2.515 -7.565 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.179 4.179 6 C -0.121 4.121 7 C 0.386 3.614 8 O -0.384 6.384 9 N -0.353 5.353 10 C 0.044 3.956 11 H 0.111 0.889 12 C -0.164 4.164 13 C -0.153 4.153 14 C -0.178 4.178 15 C 0.073 3.927 16 H 0.067 0.933 17 N -0.364 5.364 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.170 4.170 27 O 0.052 5.948 28 N -0.114 5.114 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.208 0.792 35 H 0.243 0.757 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.728 -2.654 -7.459 26.918 hybrid contribution 0.642 0.149 0.387 0.764 sum -25.085 -2.506 -7.072 26.183 Atomic orbital electron populations 1.21802 0.92029 1.03318 1.03745 1.22864 0.96013 0.80388 1.02566 1.86223 1.12889 1.30429 1.89241 1.21843 0.85920 0.90449 1.00834 1.22187 0.90096 0.99304 1.06271 1.24170 0.96690 0.84333 1.06890 1.16475 0.81135 0.86072 0.77712 1.90893 1.84819 1.12768 1.49919 1.46106 1.05004 1.11454 1.72778 1.21210 0.83636 0.93281 0.97471 0.88854 1.21907 0.98591 1.00116 0.95807 1.21485 0.94947 0.98224 1.00648 1.22305 0.96781 1.00013 0.98715 1.20094 0.86442 0.93959 0.92194 0.93262 1.42385 1.19305 1.06041 1.68681 1.19197 0.97404 0.90858 1.29542 0.91170 1.24734 0.98790 0.95572 1.01824 1.69645 1.31469 1.06182 1.50870 0.86279 0.81995 0.78771 0.79215 1.21279 1.21743 1.21273 1.22122 0.94094 0.99627 1.01135 1.84962 1.22867 1.18579 1.68410 1.74010 0.90426 1.22094 1.24833 0.91293 0.89854 0.91274 0.91457 0.91425 0.79248 0.75722 0.91747 0.91987 0.92367 0.92067 0.91817 0.92587 0.78295 0.93484 0.91398 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.28 37.16 0.38 -0.33 16 2 C 0.06 0.41 6.38 37.16 0.24 0.64 16 3 O -0.28 -2.76 10.21 -18.87 -0.19 -2.95 16 4 C 0.21 2.23 8.00 -16.72 -0.13 2.10 16 5 C -0.16 -1.60 10.97 -38.77 -0.43 -2.02 16 6 C -0.05 -0.59 7.29 -36.36 -0.26 -0.85 16 7 C 0.60 7.24 7.78 -12.47 -0.10 7.14 16 8 O -0.51 -7.52 16.57 5.30 0.09 -7.43 16 9 N -0.70 -7.72 5.07 -54.85 -0.28 -7.99 16 10 C 0.15 1.88 2.45 -67.93 -0.17 1.72 16 11 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 12 C -0.13 -1.55 5.49 -26.73 -0.15 -1.70 16 13 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 14 C -0.14 -2.31 5.50 -26.73 -0.15 -2.45 16 15 C 0.18 3.40 2.77 -67.93 -0.19 3.22 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 17 N -0.72 -17.36 5.12 -53.42 -0.27 -17.63 16 18 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 22 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.13 -1.94 4.86 -26.73 -0.13 -2.07 16 27 O 0.12 1.27 11.03 15.50 0.17 1.44 16 28 N -0.39 -4.42 11.50 30.47 0.35 -4.07 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.19 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.41 3.67 8.43 -40.82 -0.34 3.32 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.38 9.77 7.80 -40.82 -0.32 9.45 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -31.25 378.49 -7.15 -38.41 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.94 Total: 7.75 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.48 Total: -3.37 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.52 Total: -56.66 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.25 -7.15 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981230115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.411 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds