Wall clock time and date at job start Tue Mar 31 2020 14:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.46975 * 2 1 4 4 C 1.35358 * 117.00146 * 180.02562 * 3 2 1 5 5 N 1.30548 * 125.44469 * 180.29626 * 4 3 2 6 6 C 1.36331 * 108.38017 * 180.16639 * 5 4 3 7 7 C 1.47369 * 126.41382 * 179.86160 * 6 5 4 8 8 O 1.21625 * 120.00143 * 173.19110 * 7 6 5 9 9 N 1.34773 * 119.99818 * 353.46692 * 7 6 5 10 10 C 1.46925 * 120.63128 * 183.81977 * 9 7 6 11 11 C 1.53632 * 108.54201 * 126.36866 * 10 9 7 12 12 C 1.53043 * 109.23834 * 54.86014 * 11 10 9 13 13 N 1.46500 * 109.44682 * 178.49460 * 12 11 10 14 14 C 1.46501 * 119.99646 * 60.06093 * 13 12 11 15 15 C 1.36932 * 120.00080 * 240.06269 * 13 12 11 16 16 H 1.08001 * 120.00343 * 24.90762 * 15 13 12 17 17 C 1.38812 * 119.99939 * 204.91107 * 15 13 12 18 18 N 1.31625 * 120.00001 * 13.65833 * 17 15 13 19 19 Si 1.86797 * 120.00037 * 193.66014 * 17 15 13 20 20 H 1.48503 * 109.47217 * 89.99914 * 19 17 15 21 21 H 1.48501 * 109.47282 * 209.99880 * 19 17 15 22 22 H 1.48501 * 109.47101 * 329.99913 * 19 17 15 23 23 C 1.53033 * 109.53590 * 298.51100 * 12 11 10 24 24 C 1.46927 * 120.63219 * 4.10838 * 9 7 6 25 25 C 1.35913 * 107.17293 * 359.59896 * 6 5 4 26 26 O 1.34195 * 125.44218 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.47366 * 60.00159 * 1 2 3 28 28 H 1.09004 * 109.46666 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47207 * 299.99987 * 1 2 3 30 30 H 1.09002 * 109.47191 * 240.00171 * 2 1 3 31 31 H 1.08995 * 109.47633 * 120.00203 * 2 1 3 32 32 H 1.08993 * 109.59057 * 246.20675 * 10 9 7 33 33 H 1.09002 * 109.58715 * 6.63188 * 10 9 7 34 34 H 1.08995 * 109.63301 * 294.86628 * 11 10 9 35 35 H 1.08999 * 109.42967 * 174.72664 * 11 10 9 36 36 H 1.09000 * 109.45805 * 58.52966 * 12 11 10 37 37 H 1.09000 * 109.46857 * 91.44916 * 14 13 12 38 38 H 1.08999 * 109.47212 * 211.44638 * 14 13 12 39 39 H 1.08997 * 109.47315 * 331.44633 * 14 13 12 40 40 H 0.96997 * 119.99738 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.49866 * 301.41350 * 23 12 11 42 42 H 1.09005 * 109.51954 * 181.33235 * 23 12 11 43 43 H 1.08996 * 109.58346 * 353.36569 * 24 9 7 44 44 H 1.08993 * 109.58983 * 113.65469 * 24 9 7 45 45 H 1.08001 * 126.45766 * 180.21853 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9593 2.6782 0.0049 6 6 5.3038 2.4525 -0.0016 7 6 6.3629 3.4772 -0.0015 8 8 7.5277 3.1479 0.1172 9 7 6.0403 4.7797 -0.1275 10 6 7.0886 5.8056 -0.2130 11 6 6.8442 6.6498 -1.4731 12 6 5.4199 7.2086 -1.4374 13 7 5.1938 8.0439 -2.6195 14 6 5.3123 7.4640 -3.9597 15 6 4.8719 9.3666 -2.4718 16 1 5.1633 9.8967 -1.5771 17 6 4.1707 10.0261 -3.4720 18 7 3.5838 9.3376 -4.4280 19 14 4.0602 11.8908 -3.4612 20 1 5.1981 12.4586 -4.2280 21 1 2.7816 12.3145 -4.0863 22 1 4.1130 12.3817 -2.0606 23 6 4.4168 6.0528 -1.4303 24 6 4.6337 5.2013 -0.1755 25 6 5.4845 1.1054 -0.0021 26 8 4.2630 0.5428 -0.0016 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 7.0493 6.4428 0.6704 33 1 8.0652 5.3258 -0.2768 34 1 6.9693 6.0287 -2.3600 35 1 7.5575 7.4735 -1.5017 36 1 5.2880 7.8094 -0.5376 37 1 4.3383 7.0984 -4.2847 38 1 5.6652 8.2255 -4.6552 39 1 6.0216 6.6367 -3.9362 40 1 3.0942 9.7985 -5.1270 41 1 4.5647 5.4373 -2.3177 42 1 3.4022 6.4511 -1.4288 43 1 3.9900 4.3225 -0.2144 44 1 4.3976 5.7881 0.7121 45 1 6.4308 0.5849 -0.0032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985518685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:59 Heat of formation + Delta-G solvation = -25.275222 kcal Electronic energy + Delta-G solvation = -27963.928188 eV Core-core repulsion = 23984.604578 eV Total energy + Delta-G solvation = -3979.323609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.59561 -41.13385 -39.97057 -38.93462 -36.77530 -36.13868 -33.88737 -32.89666 -31.99161 -31.51270 -30.55733 -28.02300 -26.86408 -25.37649 -24.54187 -24.26742 -23.57292 -23.02013 -21.48992 -20.42679 -19.36266 -18.72493 -18.65392 -18.37462 -17.50413 -16.96890 -16.93806 -16.63734 -16.11709 -16.03246 -15.73751 -15.23140 -15.05103 -14.79925 -14.64761 -14.42890 -14.04581 -13.92085 -13.79381 -13.55073 -13.29339 -13.08079 -12.83015 -12.70580 -12.65274 -12.57464 -12.43277 -12.17943 -12.08284 -11.90698 -11.79623 -11.77340 -11.46259 -11.32034 -10.66928 -10.54678 -9.90699 -9.59228 -8.72051 -7.81064 -5.29977 0.02506 0.81213 0.87160 1.47380 1.48622 1.57434 1.64600 1.94673 2.15882 2.52270 3.15549 3.32630 3.62641 3.71747 3.85077 3.94288 3.96213 4.03673 4.20788 4.21872 4.26661 4.29146 4.38973 4.42924 4.56143 4.61677 4.76372 4.80728 4.82508 4.87930 4.92718 5.03168 5.05279 5.16785 5.21702 5.28813 5.38380 5.50524 5.58585 5.66552 5.68123 5.85553 6.25951 6.36679 6.46929 6.98567 7.17095 7.89379 8.36200 9.22838 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.003142 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.570758 B = 8909.177052 C =10356.011085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.258 6.258 4 C 0.389 3.611 5 N -0.480 5.480 6 C -0.075 4.075 7 C 0.599 3.401 8 O -0.565 6.565 9 N -0.589 5.589 10 C 0.120 3.880 11 C -0.131 4.131 12 C 0.172 3.828 13 N -0.610 5.610 14 C 0.183 3.817 15 C -0.262 4.262 16 H 0.071 0.929 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.969 3.031 20 H -0.287 1.287 21 H -0.296 1.296 22 H -0.267 1.267 23 C -0.125 4.125 24 C 0.077 3.923 25 C 0.035 3.965 26 O -0.213 6.213 27 H 0.064 0.936 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.060 0.940 37 H -0.003 1.003 38 H 0.016 0.984 39 H 0.022 0.978 40 H 0.247 0.753 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.154 0.846 44 H 0.070 0.930 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 -23.081 11.610 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.167 6.167 4 C 0.144 3.856 5 N -0.227 5.227 6 C -0.192 4.192 7 C 0.388 3.612 8 O -0.446 6.446 9 N -0.319 5.319 10 C -0.002 4.002 11 C -0.171 4.171 12 C 0.065 3.935 13 N -0.332 5.332 14 C 0.038 3.962 15 C -0.392 4.392 16 H 0.089 0.911 17 C -0.248 4.248 18 N -0.585 5.585 19 Si 0.797 3.203 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.191 1.191 23 C -0.165 4.165 24 C -0.046 4.046 25 C -0.037 4.037 26 O -0.103 6.103 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.015 0.985 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.169 0.831 44 H 0.088 0.912 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -1.511 -22.533 11.547 25.364 hybrid contribution -0.147 0.656 -0.675 0.952 sum -1.657 -21.877 10.872 24.485 Atomic orbital electron populations 1.21870 0.90056 1.05060 1.03768 1.23449 0.97809 0.77710 1.04282 1.86449 1.08070 1.33424 1.88726 1.23652 0.84093 0.81629 0.96262 1.70653 1.04567 1.21215 1.26257 1.21529 0.89675 0.94789 1.13255 1.16951 0.86252 0.81685 0.76351 1.90774 1.19213 1.81403 1.53235 1.48042 1.08827 1.05530 1.69477 1.21775 0.91303 0.89047 0.98072 1.22334 0.98449 0.99062 0.97261 1.20549 0.92650 0.90626 0.89633 1.44168 1.81017 1.07034 1.00992 1.20376 0.95725 0.94144 0.85987 1.19570 1.28491 0.86575 1.04613 0.91129 1.25828 0.97690 1.02323 0.99003 1.70241 1.37158 1.35079 1.16022 0.85239 0.76414 0.80632 0.77990 1.21435 1.22285 1.19146 1.22197 0.99828 0.97129 0.97391 1.22955 0.81569 1.03125 0.96957 1.25553 0.86655 0.91704 0.99837 1.84434 1.15997 1.38390 1.71516 0.91688 0.86932 0.91280 0.89712 0.89266 0.89709 0.88899 0.93210 0.90736 0.92140 0.98506 0.96555 0.95930 0.94394 0.94174 0.92963 0.83053 0.91204 0.71353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 71.98 0.74 -0.36 16 2 C 0.04 0.42 6.38 71.98 0.46 0.88 16 3 O -0.26 -5.04 10.19 -64.27 -0.65 -5.70 16 4 C 0.39 8.66 8.98 130.43 1.17 9.83 16 5 N -0.48 -13.15 7.71 -419.40 -3.23 -16.38 16 6 C -0.08 -1.97 6.74 40.31 0.27 -1.69 16 7 C 0.60 18.37 7.69 86.65 0.67 19.04 16 8 O -0.57 -18.77 16.32 -4.11 -0.07 -18.83 16 9 N -0.59 -18.53 2.97 -822.00 -2.44 -20.96 16 10 C 0.12 3.62 6.45 86.51 0.56 4.18 16 11 C -0.13 -4.65 5.33 30.82 0.16 -4.49 16 12 C 0.17 7.19 2.55 45.02 0.11 7.31 16 13 N -0.61 -31.48 2.80 -702.64 -1.97 -33.44 16 14 C 0.18 9.52 8.07 127.77 1.03 10.55 16 15 C -0.26 -14.69 9.55 84.03 0.80 -13.89 16 16 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 17 C -0.05 -3.05 5.05 84.86 0.43 -2.63 16 18 N -0.94 -57.04 10.89 21.65 0.24 -56.81 16 19 Si 0.97 45.94 29.57 68.60 2.03 47.97 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 C -0.13 -4.92 5.34 30.67 0.16 -4.76 16 24 C 0.08 2.48 6.31 86.36 0.55 3.03 16 25 C 0.03 0.63 11.94 67.28 0.80 1.43 16 26 O -0.21 -3.74 10.20 18.93 0.19 -3.55 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.09 2.73 7.03 -2.39 -0.02 2.71 16 34 H 0.05 1.87 6.72 -2.39 -0.02 1.86 16 35 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.06 2.53 7.88 -2.39 -0.02 2.51 16 37 H 0.00 -0.19 7.51 -2.39 -0.02 -0.21 16 38 H 0.02 0.89 7.24 -2.39 -0.02 0.87 16 39 H 0.02 1.03 6.46 -2.39 -0.02 1.02 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.04 1.68 7.72 -2.39 -0.02 1.66 16 42 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.15 4.90 3.62 -58.51 -0.21 4.69 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.27 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -72.28 364.31 2.81 -69.46 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.80 Total: 9.82 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: 7.92 Total: 28.43 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -7.41 Total: -127.60 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.53 Total: -28.08 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.28 2.81 -69.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985518685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.190 kcal (2) G-P(sol) polarization free energy of solvation -72.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds