Wall clock time and date at job start Tue Mar 31 2020 14:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35697 * 116.99990 * 2 1 4 4 C 1.41937 * 126.87841 * 180.02562 * 3 2 1 5 5 C 1.35273 * 103.95914 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.70745 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46964 * 90.00227 * 6 5 4 8 8 C 1.50703 * 109.46964 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99976 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99922 * 179.97438 * 8 7 6 11 11 C 1.47429 * 125.64707 * 0.04754 * 10 8 7 12 12 C 1.55127 * 104.94017 * 203.96070 * 11 10 8 13 13 C 1.55157 * 101.48713 * 323.22346 * 12 11 10 14 14 H 1.08994 * 110.71777 * 276.82923 * 13 12 11 15 15 N 1.46498 * 110.71916 * 153.73172 * 13 12 11 16 16 C 1.36943 * 119.99727 * 88.84279 * 15 13 12 17 17 H 1.07998 * 120.00392 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99586 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00460 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99694 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 179.97438 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00129 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00122 * 20 18 16 24 24 C 1.47019 * 125.64890 * 179.97438 * 10 8 7 25 25 H 1.08992 * 110.01461 * 59.49158 * 24 10 8 26 26 C 1.53007 * 109.88313 * 298.39585 * 24 10 8 27 27 O 1.34080 * 106.58197 * 0.25950 * 5 4 3 28 28 N 1.20913 * 111.72119 * 359.52722 * 27 5 4 29 29 H 1.09003 * 109.47085 * 60.00002 * 1 2 3 30 30 H 1.08998 * 109.46979 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46716 * 299.99738 * 1 2 3 32 32 H 1.08002 * 128.01969 * 359.97438 * 4 3 2 33 33 H 1.08995 * 109.46923 * 330.00048 * 6 5 4 34 34 H 1.09005 * 109.46819 * 210.00035 * 6 5 4 35 35 H 1.09003 * 109.47152 * 60.00006 * 7 6 5 36 36 H 1.08997 * 109.46677 * 299.99920 * 7 6 5 37 37 H 1.08998 * 110.36552 * 322.92435 * 11 10 8 38 38 H 1.09000 * 110.36719 * 85.13937 * 11 10 8 39 39 H 1.08997 * 111.16012 * 205.12555 * 12 11 10 40 40 H 1.09007 * 110.93234 * 81.21282 * 12 11 10 41 41 H 0.96998 * 120.00095 * 268.83739 * 15 13 12 42 42 H 0.97001 * 119.99952 * 359.97438 * 19 18 16 43 43 H 1.09002 * 109.47276 * 302.19115 * 26 24 10 44 44 H 1.09003 * 109.46633 * 62.19506 * 26 24 10 45 45 H 1.09001 * 109.47068 * 182.18842 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4526 -0.0005 5 6 3.5397 2.8019 -0.0009 6 6 4.8089 3.6144 -0.0009 7 6 5.2386 3.8890 -1.4434 8 6 6.5074 4.7021 -1.4435 9 8 7.0181 5.0293 -0.3932 10 7 7.0753 5.0648 -2.6107 11 6 6.5635 4.7366 -3.9538 12 6 7.8038 4.8071 -4.8827 13 6 8.5838 5.9987 -4.2669 14 1 8.1975 6.9468 -4.6406 15 7 10.0171 5.8792 -4.5452 16 6 10.5390 6.4164 -5.6917 17 1 9.8939 6.9277 -6.3908 18 6 11.8972 6.3037 -5.9552 19 7 12.6834 5.6801 -5.1034 20 14 12.6090 7.0358 -7.5193 21 1 14.0716 6.7823 -7.5636 22 1 12.3601 8.4997 -7.5386 23 1 11.9614 6.4080 -8.6991 24 6 8.3069 5.8545 -2.7555 25 1 9.1385 5.3403 -2.2739 26 6 8.1159 7.2364 -2.1272 27 8 2.2852 3.2750 0.0053 28 7 1.4701 2.3819 -0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.2448 0.7285 -0.0006 33 1 5.5947 3.0609 0.5131 34 1 4.6350 4.5600 0.5127 35 1 4.4527 4.4426 -1.9575 36 1 5.4124 2.9434 -1.9569 37 1 6.1380 3.7331 -3.9628 38 1 5.8166 5.4674 -4.2641 39 1 7.5134 5.0201 -5.9114 40 1 8.3862 3.8874 -4.8252 41 1 10.5965 5.4197 -3.9174 42 1 12.3137 5.2996 -4.2913 43 1 7.2718 7.7375 -2.6011 44 1 7.9210 7.1266 -1.0603 45 1 9.0188 7.8296 -2.2724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986308780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:13 Heat of formation + Delta-G solvation = 5.111124 kcal Electronic energy + Delta-G solvation = -26851.864130 eV Core-core repulsion = 22873.858172 eV Total energy + Delta-G solvation = -3978.005959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.21747 -40.15646 -39.19253 -37.73356 -34.98276 -34.45990 -33.16943 -31.92006 -31.05757 -30.49405 -28.90940 -27.98462 -25.39483 -25.03823 -23.72744 -23.11036 -22.38951 -21.38542 -20.29072 -18.90446 -18.26134 -17.99544 -17.47848 -17.09519 -16.78726 -16.27083 -15.86124 -15.52422 -15.39280 -14.91833 -14.65033 -14.17022 -13.83728 -13.58223 -13.47876 -13.16323 -13.07954 -12.88415 -12.61407 -12.40856 -12.28191 -12.24820 -12.05327 -11.76222 -11.65806 -11.28776 -11.24994 -10.98813 -10.68375 -10.58441 -10.26816 -10.03345 -9.98936 -9.71616 -9.54120 -9.24557 -8.98794 -8.52864 -7.14465 -6.17589 -3.19670 1.05659 1.92652 2.38896 2.64444 2.70722 3.09633 3.48053 3.50999 3.68796 3.85854 4.30889 4.51773 4.58030 4.60582 4.64392 4.69918 4.71961 4.81552 4.91828 5.02882 5.05846 5.15825 5.19407 5.25152 5.39231 5.43281 5.51379 5.56852 5.61662 5.66473 5.69946 5.83034 5.92327 5.97825 6.18224 6.32959 6.47495 6.50148 6.59527 6.59748 6.79387 7.63268 7.72746 7.89903 8.19149 8.67269 9.11594 9.98168 10.11671 11.30123 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.002058 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.976340 B =13600.039698 C =14023.350649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.208 3.792 4 C -0.233 4.233 5 C 0.003 3.997 6 C -0.026 4.026 7 C -0.135 4.135 8 C 0.528 3.472 9 O -0.543 6.543 10 N -0.608 5.608 11 C 0.097 3.903 12 C -0.155 4.155 13 C 0.181 3.819 14 H 0.067 0.933 15 N -0.726 5.726 16 C -0.336 4.336 17 H 0.066 0.934 18 C -0.042 4.042 19 N -0.940 5.940 20 Si 1.080 2.920 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.295 1.295 24 C 0.126 3.874 25 H 0.075 0.925 26 C -0.154 4.154 27 O 0.100 5.900 28 N -0.412 5.412 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.179 0.821 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.369 0.631 42 H 0.256 0.744 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.799 -8.003 8.630 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.010 3.990 4 C -0.255 4.255 5 C -0.060 4.060 6 C -0.064 4.064 7 C -0.175 4.175 8 C 0.316 3.684 9 O -0.421 6.421 10 N -0.342 5.342 11 C -0.026 4.026 12 C -0.196 4.196 13 C 0.069 3.931 14 H 0.085 0.915 15 N -0.367 5.367 16 C -0.466 4.466 17 H 0.084 0.916 18 C -0.240 4.240 19 N -0.584 5.584 20 Si 0.911 3.089 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.222 1.222 24 C 0.022 3.978 25 H 0.093 0.907 26 C -0.212 4.212 27 O 0.040 5.960 28 N -0.139 5.139 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.197 0.803 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.203 0.797 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.408 -7.384 8.210 24.981 hybrid contribution -1.020 -0.956 0.883 1.653 sum -23.428 -8.341 9.093 26.479 Atomic orbital electron populations 1.23069 0.76829 1.04100 1.02350 1.86195 1.22591 1.20951 1.89358 1.22035 0.90976 0.85704 1.00256 1.21838 0.94308 0.95760 1.13547 1.24371 0.88261 0.93251 1.00143 1.19958 0.88557 1.00609 0.97300 1.21633 0.96500 1.01741 0.97607 1.20020 0.85528 0.80208 0.82602 1.90705 1.64521 1.56401 1.30518 1.48567 1.26654 1.53266 1.05670 1.22445 0.97788 1.00116 0.82276 1.23586 0.95322 1.02156 0.98576 1.21185 0.86436 0.96031 0.89419 0.91502 1.42353 1.01795 1.67852 1.24735 1.20001 0.94574 1.33462 0.98607 0.91559 1.25804 0.92358 1.00755 1.05063 1.70888 1.36847 1.38796 1.11896 0.83241 0.76287 0.75314 0.74080 1.21015 1.22189 1.22206 1.21928 0.85967 0.91687 0.98211 0.90712 1.22044 1.02076 0.95907 1.01198 1.84809 1.12289 1.29999 1.68926 1.74142 1.15693 0.96716 1.27299 0.92224 0.87639 0.92279 0.80331 0.87201 0.88039 0.88300 0.88306 0.91191 0.91514 0.90427 0.90807 0.79749 0.93303 0.93004 0.91859 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.29 16 2 O -0.28 -2.82 10.57 -18.80 -0.20 -3.01 16 3 C 0.21 2.23 8.01 -16.65 -0.13 2.10 16 4 C -0.23 -2.10 11.11 -39.22 -0.44 -2.53 16 5 C 0.00 0.03 6.73 -35.36 -0.24 -0.21 16 6 C -0.03 -0.21 5.07 -27.88 -0.14 -0.35 16 7 C -0.13 -1.17 4.69 -27.88 -0.13 -1.30 16 8 C 0.53 6.95 7.64 -10.99 -0.08 6.87 16 9 O -0.54 -8.88 15.03 5.56 0.08 -8.80 16 10 N -0.61 -8.47 3.07 -162.88 -0.50 -8.97 16 11 C 0.10 1.15 6.69 -2.41 -0.02 1.13 16 12 C -0.16 -2.41 6.79 -24.46 -0.17 -2.58 16 13 C 0.18 3.35 3.12 -66.10 -0.21 3.14 16 14 H 0.07 1.27 7.81 -51.93 -0.41 0.86 16 15 N -0.73 -17.16 5.24 -51.65 -0.27 -17.43 16 16 C -0.34 -8.96 9.97 -15.06 -0.15 -9.11 16 17 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 18 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 19 N -0.94 -28.31 13.70 55.49 0.76 -27.55 16 20 Si 1.08 25.09 29.92 -169.99 -5.09 20.00 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.13 2.11 3.21 -66.95 -0.22 1.89 16 25 H 0.07 1.41 7.70 -51.93 -0.40 1.01 16 26 C -0.15 -2.47 9.09 37.16 0.34 -2.13 16 27 O 0.10 1.06 11.19 17.07 0.19 1.25 16 28 N -0.41 -4.71 11.54 30.38 0.35 -4.36 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.11 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.73 7.85 -51.93 -0.41 0.33 16 37 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 41 H 0.37 9.16 6.37 -40.82 -0.26 8.90 16 42 H 0.26 7.60 6.77 -40.82 -0.28 7.32 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.04 6.90 -51.93 -0.36 0.68 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -32.97 376.16 -6.36 -39.33 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.77 Total: 6.92 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.59 Total: -3.05 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.34 Total: -58.31 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.97 -6.36 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986308780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.442 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds