Wall clock time and date at job start Tue Mar 31 2020 14:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35702 * 117.00182 * 2 1 4 4 C 1.41939 * 126.87839 * 180.29790 * 3 2 1 5 5 C 1.35275 * 103.95738 * 180.11476 * 4 3 2 6 6 C 1.50703 * 126.70605 * 179.87852 * 5 4 3 7 7 C 1.53000 * 109.46912 * 89.71192 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.47429 * 125.64683 * 0.02562 * 10 8 7 12 12 C 1.54904 * 104.83171 * 204.09682 * 11 10 8 13 13 H 1.08998 * 111.00749 * 81.06988 * 12 11 10 14 14 N 1.46503 * 111.00373 * 204.91838 * 12 11 10 15 15 C 1.36938 * 119.99834 * 273.54914 * 14 12 11 16 16 H 1.08002 * 120.00110 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00123 * 180.02562 * 15 14 12 18 18 N 1.31623 * 120.00020 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46789 * 89.99765 * 19 17 15 21 21 H 1.48497 * 109.47294 * 209.99328 * 19 17 15 22 22 H 1.48497 * 109.47091 * 329.99973 * 19 17 15 23 23 C 1.55158 * 101.58211 * 322.98854 * 12 11 10 24 24 C 1.47014 * 125.64925 * 179.71903 * 10 8 7 25 25 H 1.08999 * 109.88686 * 59.55315 * 24 10 8 26 26 C 1.53005 * 109.88079 * 298.38902 * 24 10 8 27 27 O 1.34083 * 106.58290 * 359.61697 * 5 4 3 28 28 N 1.20911 * 111.71844 * 0.26130 * 27 5 4 29 29 H 1.08995 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47079 * 300.00102 * 1 2 3 31 31 H 1.09005 * 109.46991 * 60.00128 * 1 2 3 32 32 H 1.07997 * 128.01878 * 0.03054 * 4 3 2 33 33 H 1.09001 * 109.46980 * 329.71320 * 6 5 4 34 34 H 1.08992 * 109.47158 * 209.71425 * 6 5 4 35 35 H 1.09002 * 109.47398 * 300.00078 * 7 6 5 36 36 H 1.09001 * 109.47194 * 60.00258 * 7 6 5 37 37 H 1.09004 * 110.36746 * 322.93213 * 11 10 8 38 38 H 1.08996 * 110.36514 * 85.14590 * 11 10 8 39 39 H 0.96998 * 120.00364 * 93.53978 * 14 12 11 40 40 H 0.97001 * 119.99959 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.71971 * 153.86387 * 23 12 11 42 42 H 1.08999 * 110.71810 * 277.14021 * 23 12 11 43 43 H 1.08996 * 109.47028 * 61.45905 * 26 24 10 44 44 H 1.08999 * 109.47220 * 181.45901 * 26 24 10 45 45 H 1.09003 * 109.46943 * 301.45383 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4526 -0.0059 5 6 3.5397 2.8019 -0.0005 6 6 4.8090 3.6144 -0.0008 7 6 5.2382 3.8892 -1.4434 8 6 6.5071 4.7023 -1.4436 9 8 7.0175 5.0300 -0.3934 10 7 7.0742 5.0661 -2.6109 11 6 6.5617 4.7388 -3.9539 12 6 7.8020 4.8076 -4.8793 13 1 8.3851 3.8886 -4.8201 14 7 7.4102 5.0901 -6.2624 15 6 7.0637 4.0631 -7.0993 16 1 7.0796 3.0448 -6.7398 17 6 6.6930 4.3307 -8.4099 18 7 6.6741 5.5716 -8.8482 19 14 6.2209 2.9296 -9.5517 20 1 4.7604 2.6802 -9.4516 21 1 6.5664 3.2924 -10.9496 22 1 6.9605 1.7025 -9.1615 23 6 8.5815 6.0014 -4.2673 24 6 8.3028 5.8603 -2.7558 25 1 9.1350 5.3473 -2.2736 26 6 8.1061 7.2421 -2.1290 27 8 2.2852 3.2751 -0.0008 28 7 1.4701 2.3819 -0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.2447 0.7285 -0.0118 33 1 5.5949 3.0607 0.5130 34 1 4.6353 4.5598 0.5130 35 1 5.4120 2.9438 -1.9572 36 1 4.4523 4.4429 -1.9571 37 1 6.1364 3.7352 -3.9635 38 1 5.8145 5.4696 -4.2632 39 1 7.3962 6.0046 -6.5854 40 1 6.4147 5.7587 -9.7640 41 1 9.6478 5.9128 -4.4750 42 1 8.1920 6.9484 -4.6408 43 1 7.8981 7.1320 -1.0647 44 1 9.0115 7.8341 -2.2629 45 1 7.2686 7.7446 -2.6129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988889852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:07 Heat of formation + Delta-G solvation = 2.444262 kcal Electronic energy + Delta-G solvation = -27011.163443 eV Core-core repulsion = 23033.041841 eV Total energy + Delta-G solvation = -3978.121602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.08958 -40.06061 -39.07090 -37.62277 -34.89283 -34.23192 -33.05296 -31.91347 -31.42657 -30.23038 -28.45658 -27.88128 -25.55810 -25.24315 -23.85376 -23.59132 -21.71429 -21.09031 -20.31265 -18.73068 -18.13787 -17.87031 -17.35731 -16.97471 -16.71079 -16.20785 -15.74237 -15.40876 -15.31342 -14.93340 -14.25975 -14.09218 -13.78505 -13.64522 -13.29692 -13.15222 -12.94112 -12.72714 -12.51474 -12.42799 -12.29621 -12.13990 -12.09714 -11.71425 -11.62127 -11.17955 -11.12943 -11.04437 -10.80232 -10.67083 -10.36236 -10.06878 -9.89722 -9.81278 -9.62177 -9.41891 -9.07224 -8.41058 -7.14785 -5.90232 -3.21488 1.18524 2.05298 2.51051 2.73904 2.83822 3.22005 3.36161 3.42174 3.43423 3.98384 4.40978 4.50548 4.65841 4.70345 4.76680 4.80871 4.83778 4.92435 5.06513 5.10227 5.17311 5.18937 5.25643 5.35708 5.45102 5.52363 5.57243 5.66131 5.70423 5.73685 5.78977 5.81944 6.05837 6.08446 6.14137 6.30665 6.41727 6.42291 6.60123 6.71821 6.79526 7.58151 7.74848 8.02701 8.26086 8.29250 9.39370 9.92648 10.27311 11.31651 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.003164 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.453158 B = 8847.958833 C =11492.427207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.208 3.792 4 C -0.233 4.233 5 C 0.003 3.997 6 C -0.024 4.024 7 C -0.136 4.136 8 C 0.530 3.470 9 O -0.553 6.553 10 N -0.608 5.608 11 C 0.071 3.929 12 C 0.172 3.828 13 H 0.064 0.936 14 N -0.712 5.712 15 C -0.250 4.250 16 H 0.072 0.928 17 C -0.007 4.007 18 N -0.929 5.929 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.137 4.137 24 C 0.139 3.861 25 H 0.072 0.928 26 C -0.161 4.161 27 O 0.100 5.900 28 N -0.411 5.411 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.179 0.821 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 -5.006 18.206 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.010 3.990 4 C -0.254 4.254 5 C -0.060 4.060 6 C -0.062 4.062 7 C -0.177 4.177 8 C 0.319 3.681 9 O -0.433 6.433 10 N -0.341 5.341 11 C -0.055 4.055 12 C 0.060 3.940 13 H 0.082 0.918 14 N -0.352 5.352 15 C -0.381 4.381 16 H 0.090 0.910 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.175 4.175 24 C 0.035 3.965 25 H 0.090 0.910 26 C -0.219 4.219 27 O 0.040 5.960 28 N -0.138 5.138 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.196 0.804 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.951 -4.899 18.679 20.207 hybrid contribution -0.097 -0.958 -0.976 1.371 sum -6.048 -5.857 17.703 19.603 Atomic orbital electron populations 1.23061 0.76879 1.04043 1.02362 1.86188 1.22558 1.20975 1.89386 1.22030 0.90978 0.85695 1.00290 1.21820 0.94291 0.95742 1.13589 1.24371 0.88295 0.93255 1.00126 1.19943 0.88500 1.00425 0.97370 1.21640 0.96638 1.01994 0.97388 1.20031 0.85472 0.80093 0.82541 1.90667 1.64801 1.57073 1.30728 1.48647 1.26468 1.52626 1.06355 1.23539 1.00523 1.00618 0.80771 1.21279 0.91539 0.95845 0.85327 0.91767 1.42321 1.80036 1.07634 1.05250 1.19229 1.38488 0.88382 0.91988 0.90955 1.24772 1.01890 0.96379 0.97370 1.69657 1.53817 1.17315 1.16812 0.86193 0.78299 0.81299 0.80388 1.21579 1.21673 1.20619 1.23009 1.01451 1.00655 0.92424 1.21509 0.86789 0.91706 0.96483 0.90997 1.22126 1.01880 0.95982 1.01878 1.84808 1.12286 1.29986 1.68894 1.74136 1.15711 0.96718 1.27237 0.87696 0.92334 0.92168 0.80360 0.87345 0.88190 0.88157 0.88160 0.91214 0.91093 0.77810 0.93285 0.90277 0.90352 0.91548 0.91926 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.73 101.05 1.08 1.34 16 2 O -0.28 -3.21 10.57 -18.81 -0.20 -3.41 16 3 C 0.21 2.53 8.01 -16.65 -0.13 2.40 16 4 C -0.23 -2.41 11.11 -39.22 -0.44 -2.85 16 5 C 0.00 0.03 6.73 -35.36 -0.24 -0.21 16 6 C -0.02 -0.22 5.07 -27.88 -0.14 -0.36 16 7 C -0.14 -1.43 4.69 -27.88 -0.13 -1.56 16 8 C 0.53 7.20 7.64 -10.98 -0.08 7.12 16 9 O -0.55 -8.72 15.03 5.56 0.08 -8.63 16 10 N -0.61 -8.64 3.06 -163.01 -0.50 -9.14 16 11 C 0.07 1.11 6.38 -2.53 -0.02 1.10 16 12 C 0.17 3.04 3.69 -65.78 -0.24 2.80 16 13 H 0.06 1.16 8.13 -51.93 -0.42 0.74 16 14 N -0.71 -16.20 5.28 -51.35 -0.27 -16.47 16 15 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 18 N -0.93 -26.60 13.06 55.49 0.72 -25.88 16 19 Si 0.91 21.30 29.55 -169.99 -5.02 16.27 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 C -0.14 -2.01 6.11 -24.89 -0.15 -2.16 16 24 C 0.14 1.91 3.46 -66.95 -0.23 1.68 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 C -0.16 -2.06 9.11 37.16 0.34 -1.72 16 27 O 0.10 1.22 11.19 17.07 0.19 1.41 16 28 N -0.41 -5.34 11.54 30.38 0.35 -4.99 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.11 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.10 0.97 7.85 -51.93 -0.41 0.56 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.04 7.48 -51.93 -0.39 0.66 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.39 9.44 7.71 -40.82 -0.31 9.12 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.18 7.70 -51.93 -0.40 0.78 16 43 H 0.07 0.92 6.89 -51.93 -0.36 0.57 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -30.81 378.22 -6.48 -37.29 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.90 Total: 7.14 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.63 Total: 0.72 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.30 Total: -56.48 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.81 -6.48 -37.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988889852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.735 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds