Wall clock time and date at job start Tue Mar 31 2020 14:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35702 * 117.00182 * 2 1 4 4 C 1.41939 * 126.87839 * 180.29790 * 3 2 1 5 5 C 1.35275 * 103.95738 * 180.11476 * 4 3 2 6 6 C 1.50703 * 126.70605 * 179.87852 * 5 4 3 7 7 C 1.53000 * 109.46912 * 89.71192 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.47429 * 125.64683 * 0.02562 * 10 8 7 12 12 C 1.54904 * 104.83171 * 204.09682 * 11 10 8 13 13 H 1.08998 * 111.00749 * 81.06988 * 12 11 10 14 14 N 1.46503 * 111.00373 * 204.91838 * 12 11 10 15 15 C 1.36938 * 119.99834 * 273.54914 * 14 12 11 16 16 H 1.08002 * 120.00110 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00123 * 180.02562 * 15 14 12 18 18 N 1.31623 * 120.00020 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46789 * 89.99765 * 19 17 15 21 21 H 1.48497 * 109.47294 * 209.99328 * 19 17 15 22 22 H 1.48497 * 109.47091 * 329.99973 * 19 17 15 23 23 C 1.55158 * 101.58211 * 322.98854 * 12 11 10 24 24 C 1.47014 * 125.64925 * 179.71903 * 10 8 7 25 25 H 1.08999 * 109.88686 * 59.55315 * 24 10 8 26 26 C 1.53005 * 109.88079 * 298.38902 * 24 10 8 27 27 O 1.34083 * 106.58290 * 359.61697 * 5 4 3 28 28 N 1.20911 * 111.71844 * 0.26130 * 27 5 4 29 29 H 1.08995 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47079 * 300.00102 * 1 2 3 31 31 H 1.09005 * 109.46991 * 60.00128 * 1 2 3 32 32 H 1.07997 * 128.01878 * 0.03054 * 4 3 2 33 33 H 1.09001 * 109.46980 * 329.71320 * 6 5 4 34 34 H 1.08992 * 109.47158 * 209.71425 * 6 5 4 35 35 H 1.09002 * 109.47398 * 300.00078 * 7 6 5 36 36 H 1.09001 * 109.47194 * 60.00258 * 7 6 5 37 37 H 1.09004 * 110.36746 * 322.93213 * 11 10 8 38 38 H 1.08996 * 110.36514 * 85.14590 * 11 10 8 39 39 H 0.96998 * 120.00364 * 93.53978 * 14 12 11 40 40 H 0.97001 * 119.99959 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.71971 * 153.86387 * 23 12 11 42 42 H 1.08999 * 110.71810 * 277.14021 * 23 12 11 43 43 H 1.08996 * 109.47028 * 61.45905 * 26 24 10 44 44 H 1.08999 * 109.47220 * 181.45901 * 26 24 10 45 45 H 1.09003 * 109.46943 * 301.45383 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4526 -0.0059 5 6 3.5397 2.8019 -0.0005 6 6 4.8090 3.6144 -0.0008 7 6 5.2382 3.8892 -1.4434 8 6 6.5071 4.7023 -1.4436 9 8 7.0175 5.0300 -0.3934 10 7 7.0742 5.0661 -2.6109 11 6 6.5617 4.7388 -3.9539 12 6 7.8020 4.8076 -4.8793 13 1 8.3851 3.8886 -4.8201 14 7 7.4102 5.0901 -6.2624 15 6 7.0637 4.0631 -7.0993 16 1 7.0796 3.0448 -6.7398 17 6 6.6930 4.3307 -8.4099 18 7 6.6741 5.5716 -8.8482 19 14 6.2209 2.9296 -9.5517 20 1 4.7604 2.6802 -9.4516 21 1 6.5664 3.2924 -10.9496 22 1 6.9605 1.7025 -9.1615 23 6 8.5815 6.0014 -4.2673 24 6 8.3028 5.8603 -2.7558 25 1 9.1350 5.3473 -2.2736 26 6 8.1061 7.2421 -2.1290 27 8 2.2852 3.2751 -0.0008 28 7 1.4701 2.3819 -0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.2447 0.7285 -0.0118 33 1 5.5949 3.0607 0.5130 34 1 4.6353 4.5598 0.5130 35 1 5.4120 2.9438 -1.9572 36 1 4.4523 4.4429 -1.9571 37 1 6.1364 3.7352 -3.9635 38 1 5.8145 5.4696 -4.2632 39 1 7.3962 6.0046 -6.5854 40 1 6.4147 5.7587 -9.7640 41 1 9.6478 5.9128 -4.4750 42 1 8.1920 6.9484 -4.6408 43 1 7.8981 7.1320 -1.0647 44 1 9.0115 7.8341 -2.2629 45 1 7.2686 7.7446 -2.6129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988889852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:07 Heat of formation + Delta-G solvation = -18.134839 kcal Electronic energy + Delta-G solvation = -27012.055820 eV Core-core repulsion = 23033.041841 eV Total energy + Delta-G solvation = -3979.013979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.96281 -41.21594 -39.86330 -38.85461 -36.02215 -35.67451 -33.91281 -33.26943 -32.90051 -31.15244 -30.02233 -28.56389 -26.71658 -26.27613 -25.59323 -24.46140 -22.80422 -22.03500 -21.65903 -19.85843 -19.23660 -18.96249 -18.74617 -17.87473 -17.74821 -17.39727 -16.63546 -16.51096 -16.41415 -16.04721 -15.63483 -15.33737 -14.92033 -14.84130 -14.70065 -14.23959 -14.17093 -13.85332 -13.51655 -13.45997 -13.21005 -13.13041 -12.98244 -12.86710 -12.83384 -12.75145 -12.45733 -12.27622 -12.08829 -11.99542 -11.92180 -11.69123 -11.45854 -11.02194 -10.83551 -10.51767 -10.30517 -9.61662 -9.02620 -7.92997 -5.22432 0.35185 1.19998 1.51738 1.52185 1.60157 1.65642 1.74381 1.94408 2.22663 2.58679 3.15799 3.39464 3.41697 3.75818 3.83937 3.87907 3.91691 4.00997 4.05276 4.19211 4.21231 4.21495 4.23485 4.36674 4.42556 4.50868 4.56017 4.57617 4.59871 4.78505 4.82185 4.84830 4.89258 4.95268 5.07117 5.12742 5.17156 5.28917 5.42929 5.46504 5.57669 5.92440 6.28431 6.60318 7.17298 7.17897 7.36303 8.08604 8.31768 9.29955 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.003164 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.453158 B = 8847.958833 C =11492.427207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.296 6.296 3 C 0.194 3.806 4 C -0.232 4.232 5 C 0.009 3.991 6 C -0.014 4.014 7 C -0.131 4.131 8 C 0.530 3.470 9 O -0.573 6.573 10 N -0.609 5.609 11 C 0.087 3.913 12 C 0.164 3.836 13 H 0.064 0.936 14 N -0.724 5.724 15 C -0.240 4.240 16 H 0.081 0.919 17 C -0.070 4.070 18 N -0.967 5.967 19 Si 0.967 3.033 20 H -0.289 1.289 21 H -0.300 1.300 22 H -0.268 1.268 23 C -0.126 4.126 24 C 0.138 3.862 25 H 0.078 0.922 26 C -0.153 4.153 27 O 0.088 5.912 28 N -0.432 5.432 29 H 0.135 0.865 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.202 0.798 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.377 0.623 40 H 0.250 0.750 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 -6.324 19.368 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.202 6.202 3 C -0.003 4.003 4 C -0.254 4.254 5 C -0.055 4.055 6 C -0.053 4.053 7 C -0.171 4.171 8 C 0.321 3.679 9 O -0.453 6.453 10 N -0.343 5.343 11 C -0.039 4.039 12 C 0.053 3.947 13 H 0.082 0.918 14 N -0.364 5.364 15 C -0.371 4.371 16 H 0.099 0.901 17 C -0.263 4.263 18 N -0.617 5.617 19 Si 0.796 3.204 20 H -0.217 1.217 21 H -0.227 1.227 22 H -0.193 1.193 23 C -0.164 4.164 24 C 0.035 3.965 25 H 0.096 0.904 26 C -0.211 4.211 27 O 0.029 5.971 28 N -0.161 5.161 29 H 0.153 0.847 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.219 0.781 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.209 0.791 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.611 -6.243 19.901 21.599 hybrid contribution -0.170 -0.555 -1.222 1.353 sum -5.781 -6.798 18.679 20.701 Atomic orbital electron populations 1.23294 0.75436 1.05958 1.02120 1.86179 1.24097 1.20666 1.89299 1.22396 0.91893 0.85833 1.00197 1.22170 0.94159 0.96163 1.12893 1.24523 0.87920 0.93380 0.99643 1.19911 0.88192 1.00544 0.96634 1.21642 0.95007 1.02023 0.98460 1.20491 0.85952 0.79718 0.81790 1.90664 1.65590 1.57863 1.31215 1.48666 1.26660 1.52906 1.06033 1.23132 0.98946 1.00798 0.81025 1.21462 0.92722 0.97090 0.83403 0.91771 1.42452 1.80289 1.06515 1.07096 1.19615 1.35989 0.89349 0.92178 0.90116 1.25489 1.03420 0.98260 0.99109 1.69800 1.56151 1.19123 1.16664 0.85243 0.77814 0.79256 0.78061 1.21659 1.22677 1.19282 1.22919 1.01719 0.99042 0.92761 1.21551 0.86934 0.92343 0.95678 0.90374 1.22054 1.02590 0.95569 1.00889 1.84774 1.12988 1.30091 1.69248 1.74122 1.16440 0.97235 1.28317 0.84747 0.92296 0.92682 0.78095 0.86119 0.88135 0.86831 0.87851 0.90284 0.92372 0.79081 0.94074 0.89088 0.90847 0.92518 0.90072 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.73 113.37 1.22 1.61 16 2 O -0.30 -6.35 10.57 -90.22 -0.95 -7.31 16 3 C 0.19 4.54 8.01 85.79 0.69 5.22 16 4 C -0.23 -4.38 11.11 22.50 0.25 -4.13 16 5 C 0.01 0.17 6.73 25.00 0.17 0.33 16 6 C -0.01 -0.23 5.07 29.85 0.15 -0.08 16 7 C -0.13 -2.45 4.69 29.85 0.14 -2.31 16 8 C 0.53 13.33 7.64 87.66 0.67 14.00 16 9 O -0.57 -16.93 15.03 -3.02 -0.05 -16.98 16 10 N -0.61 -16.21 3.06 -788.03 -2.41 -18.62 16 11 C 0.09 2.58 6.38 86.85 0.55 3.14 16 12 C 0.16 5.56 3.69 46.38 0.17 5.73 16 13 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 14 N -0.72 -32.66 5.28 -316.37 -1.67 -34.33 16 15 C -0.24 -12.12 9.98 84.03 0.84 -11.28 16 16 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 17 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 18 N -0.97 -56.20 13.06 21.65 0.28 -55.92 16 19 Si 0.97 43.72 29.55 68.60 2.03 45.75 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 23 C -0.13 -3.52 6.11 31.79 0.19 -3.32 16 24 C 0.14 3.55 3.46 45.35 0.16 3.71 16 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 26 C -0.15 -3.66 9.11 71.98 0.66 -3.01 16 27 O 0.09 2.07 11.19 71.24 0.80 2.87 16 28 N -0.43 -11.02 11.54 -172.59 -1.99 -13.01 16 29 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.12 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.10 1.66 8.10 -2.39 -0.02 1.64 16 35 H 0.11 1.86 7.85 -2.39 -0.02 1.84 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.20 7.48 -2.38 -0.02 2.18 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.38 18.50 7.71 -92.71 -0.71 17.78 16 40 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.07 2.15 7.70 -2.39 -0.02 2.13 16 43 H 0.06 1.48 6.89 -2.39 -0.02 1.47 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -65.45 378.22 2.64 -62.81 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.28 Total: 28.43 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.32 Total: 6.29 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -5.79 Total: -121.87 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.20 Total: -21.41 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -65.45 2.64 -62.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988889852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.675 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds