Wall clock time and date at job start Tue Mar 31 2020 14:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46954 * 2 1 4 4 C 1.35345 * 117.00197 * 180.02562 * 3 2 1 5 5 N 1.30557 * 125.44781 * 180.33742 * 4 3 2 6 6 C 1.36329 * 108.38317 * 180.12525 * 5 4 3 7 7 C 1.47363 * 126.41153 * 179.82343 * 6 5 4 8 8 O 1.21621 * 120.00175 * 179.69369 * 7 6 5 9 9 N 1.34777 * 120.00132 * 359.69396 * 7 6 5 10 10 C 1.46498 * 120.00324 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.49774 * 34.92551 * 10 9 7 12 12 C 1.53044 * 109.52206 * 274.85404 * 10 9 7 13 13 C 1.53042 * 109.53628 * 301.39304 * 12 10 9 14 14 C 1.53617 * 109.24179 * 298.51135 * 13 12 10 15 15 N 1.46929 * 108.54417 * 54.85876 * 14 13 12 16 16 C 1.36934 * 120.63417 * 126.36861 * 15 14 13 17 17 H 1.07998 * 119.99900 * 212.59897 * 16 15 14 18 18 C 1.38809 * 119.99988 * 32.59126 * 16 15 14 19 19 N 1.31616 * 120.00169 * 197.79624 * 18 16 15 20 20 Si 1.86806 * 120.00045 * 17.79470 * 18 16 15 21 21 H 1.48495 * 109.47377 * 270.00069 * 20 18 16 22 22 H 1.48496 * 109.46824 * 149.99859 * 20 18 16 23 23 H 1.48497 * 109.46750 * 30.00172 * 20 18 16 24 24 C 1.46927 * 118.73377 * 306.09177 * 15 14 13 25 25 H 1.09001 * 109.58812 * 293.92812 * 24 15 14 26 26 C 1.53004 * 109.58501 * 173.65081 * 24 15 14 27 27 C 1.35919 * 107.17404 * 359.56515 * 6 5 4 28 28 O 1.34202 * 125.44994 * 359.97005 * 4 3 2 29 29 H 1.08996 * 109.47492 * 60.00819 * 1 2 3 30 30 H 1.09005 * 109.46377 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47572 * 299.99610 * 1 2 3 32 32 H 1.08993 * 109.47602 * 239.99835 * 2 1 3 33 33 H 1.08999 * 109.47117 * 119.99847 * 2 1 3 34 34 H 0.97001 * 119.99663 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46040 * 61.41835 * 12 10 9 36 36 H 1.09009 * 109.45953 * 181.37306 * 12 10 9 37 37 H 1.09003 * 109.49461 * 58.58842 * 13 12 10 38 38 H 1.09003 * 109.49298 * 178.68004 * 13 12 10 39 39 H 1.08999 * 109.74062 * 295.11974 * 14 13 12 40 40 H 1.09003 * 109.66347 * 174.54642 * 14 13 12 41 41 H 0.97000 * 119.99962 * 355.08543 * 19 18 16 42 42 H 1.09001 * 109.47380 * 59.99608 * 26 24 15 43 43 H 1.08992 * 109.47280 * 180.02562 * 26 24 15 44 44 H 1.09006 * 109.46721 * 299.99957 * 26 24 15 45 45 H 1.08001 * 126.45285 * 180.26171 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6784 0.0056 6 6 5.3038 2.4526 -0.0001 7 6 6.3628 3.4774 0.0001 8 8 7.5322 3.1433 0.0001 9 7 6.0355 4.7848 0.0002 10 6 7.0882 5.8035 -0.0001 11 1 7.9353 5.4511 -0.5887 12 6 7.5411 6.0714 1.4370 13 6 6.3455 6.5349 2.2724 14 6 5.7961 7.8445 1.6869 15 7 5.4916 7.6295 0.2657 16 6 4.2509 7.9228 -0.2342 17 1 3.8421 7.3356 -1.0431 18 6 3.5188 8.9747 0.2989 19 7 2.2224 9.0496 0.0842 20 14 4.3734 10.2841 1.3210 21 1 4.3647 9.8805 2.7500 22 1 3.6586 11.5767 1.1673 23 1 5.7761 10.4361 0.8580 24 6 6.5455 7.0996 -0.6102 25 1 7.3500 7.8300 -0.6971 26 6 5.9638 6.8102 -1.9954 27 6 5.4845 1.1055 -0.0003 28 8 4.2630 0.5430 -0.0005 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.1028 5.0512 -0.0002 35 1 7.9506 5.1565 1.8652 36 1 8.3072 6.8470 1.4377 37 1 5.5690 5.7702 2.2517 38 1 6.6640 6.7030 3.3012 39 1 6.5418 8.6333 1.7856 40 1 4.8870 8.1300 2.2162 41 1 1.7905 8.4108 -0.5043 42 1 5.5668 7.7311 -2.4225 43 1 6.7469 6.4168 -2.6434 44 1 5.1630 6.0760 -1.9070 45 1 6.4309 0.5851 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993534953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:58 Heat of formation + Delta-G solvation = -24.286135 kcal Electronic energy + Delta-G solvation = -28543.335679 eV Core-core repulsion = 24564.054959 eV Total energy + Delta-G solvation = -3979.280719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.51894 -39.77160 -39.10967 -37.72765 -35.00016 -34.00355 -32.59536 -32.24779 -31.64935 -30.12507 -29.44230 -26.46776 -24.75833 -24.36521 -23.76592 -22.60756 -22.03232 -20.94667 -20.31054 -19.06807 -18.83785 -17.70318 -17.29810 -17.03258 -16.49578 -15.84173 -15.45040 -15.23175 -14.95724 -14.78362 -14.31057 -13.96517 -13.53899 -13.46257 -13.33011 -13.22629 -13.14751 -13.05366 -12.58897 -12.12110 -11.94131 -11.74961 -11.64693 -11.40830 -11.23177 -10.98858 -10.77338 -10.75968 -10.48520 -10.43862 -10.15565 -9.94614 -9.72827 -9.46506 -9.01070 -8.82901 -8.57230 -8.41578 -6.98668 -6.15820 -3.31859 1.06158 1.76374 2.05134 2.58828 3.42329 3.44804 3.47043 3.57346 3.72873 4.42856 4.43372 4.48931 4.63044 4.74093 4.79478 4.95847 5.02333 5.28606 5.30925 5.34572 5.41204 5.42885 5.54432 5.57092 5.64187 5.74469 5.77924 6.01568 6.10807 6.14018 6.30966 6.34621 6.39219 6.49664 6.53460 6.56871 6.75531 6.79735 6.87535 6.97913 7.07120 7.45020 7.97618 8.12501 8.47275 8.51850 9.11775 9.64408 10.26153 11.20287 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.004122 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.178581 B = 6790.594296 C = 8248.648525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.242 6.242 4 C 0.381 3.619 5 N -0.446 5.446 6 C -0.039 4.039 7 C 0.596 3.404 8 O -0.551 6.551 9 N -0.679 5.679 10 C 0.131 3.869 11 H 0.081 0.919 12 C -0.121 4.121 13 C -0.134 4.134 14 C 0.125 3.875 15 N -0.600 5.600 16 C -0.342 4.342 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 1.066 2.934 21 H -0.295 1.295 22 H -0.302 1.302 23 H -0.285 1.285 24 C 0.161 3.839 25 H 0.044 0.956 26 C -0.134 4.134 27 C -0.009 4.009 28 O -0.229 6.229 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.421 0.579 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.055 0.945 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 -18.376 0.305 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.151 6.151 4 C 0.135 3.865 5 N -0.191 5.191 6 C -0.158 4.158 7 C 0.381 3.619 8 O -0.430 6.430 9 N -0.329 5.329 10 C 0.024 3.976 11 H 0.099 0.901 12 C -0.160 4.160 13 C -0.174 4.174 14 C 0.000 4.000 15 N -0.326 5.326 16 C -0.471 4.471 17 H 0.089 0.911 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.898 3.102 21 H -0.223 1.223 22 H -0.230 1.230 23 H -0.212 1.212 24 C 0.053 3.947 25 H 0.062 0.938 26 C -0.192 4.192 27 C -0.081 4.081 28 O -0.120 6.120 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.259 0.741 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.528 -16.541 1.178 16.954 hybrid contribution 0.103 -2.167 -0.805 2.314 sum 3.632 -18.708 0.373 19.061 Atomic orbital electron populations 1.21812 0.91232 1.03496 1.04452 1.23035 0.96920 0.79519 1.02842 1.86432 1.08919 1.30548 1.89182 1.23351 0.83473 0.81528 0.98171 1.71263 1.03891 1.21229 1.22717 1.21845 0.90376 0.94074 1.09533 1.16690 0.85955 0.82143 0.77149 1.90780 1.17872 1.81702 1.52691 1.45894 1.12368 1.04026 1.70608 1.21621 0.89878 0.89197 0.96868 0.90061 1.21786 0.98028 1.00653 0.95536 1.22050 0.97667 0.99955 0.97679 1.21469 0.98753 0.94088 0.85728 1.44477 1.09758 1.76213 1.02119 1.20200 0.92052 1.12776 1.22055 0.91131 1.26216 0.96006 0.97929 1.01190 1.70889 1.08090 1.40915 1.36250 0.83746 0.74922 0.76246 0.75280 1.22322 1.23033 1.21176 1.20761 0.91954 0.91169 0.90769 0.93815 1.21768 0.99863 1.02211 0.95349 1.24885 0.85754 0.92914 1.04536 1.84364 1.16247 1.39310 1.72122 0.90857 0.89554 0.90838 0.90916 0.90917 0.74076 0.92515 0.91546 0.91943 0.92920 0.95617 0.90855 0.92673 0.91593 0.94137 0.92586 0.74938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.41 6.38 37.16 0.24 0.64 16 3 O -0.24 -3.10 10.19 -40.96 -0.42 -3.52 16 4 C 0.38 5.47 8.98 52.22 0.47 5.94 16 5 N -0.45 -7.65 11.10 -11.72 -0.13 -7.78 16 6 C -0.04 -0.62 6.99 -82.99 -0.58 -1.20 16 7 C 0.60 10.42 7.78 -12.55 -0.10 10.33 16 8 O -0.55 -10.20 16.55 5.26 0.09 -10.11 16 9 N -0.68 -12.38 3.46 -54.79 -0.19 -12.56 16 10 C 0.13 2.31 2.32 -67.81 -0.16 2.15 16 11 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 12 C -0.12 -2.05 5.58 -26.69 -0.15 -2.20 16 13 C -0.13 -2.46 5.95 -26.39 -0.16 -2.61 16 14 C 0.12 2.67 4.23 -3.49 -0.01 2.66 16 15 N -0.60 -13.73 2.35 -164.52 -0.39 -14.11 16 16 C -0.34 -9.13 8.79 -15.06 -0.13 -9.26 16 17 H 0.07 2.01 6.53 -52.49 -0.34 1.66 16 18 C -0.01 -0.33 5.24 -17.43 -0.09 -0.42 16 19 N -0.92 -28.25 13.70 55.49 0.76 -27.49 16 20 Si 1.07 26.28 24.75 -169.99 -4.21 22.07 16 21 H -0.30 -6.92 6.60 56.52 0.37 -6.55 16 22 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 23 H -0.29 -6.72 6.80 56.52 0.38 -6.34 16 24 C 0.16 3.14 3.20 -67.60 -0.22 2.92 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 C -0.13 -2.55 7.76 37.16 0.29 -2.27 16 27 C -0.01 -0.11 11.93 29.90 0.36 0.25 16 28 O -0.23 -2.76 10.20 -17.74 -0.18 -2.94 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.42 8.53 7.50 -40.82 -0.31 8.22 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.06 1.23 7.53 -51.93 -0.39 0.84 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.54 7.07 -51.93 -0.37 0.17 16 40 H 0.07 1.72 4.94 -51.93 -0.26 1.46 16 41 H 0.26 8.04 8.73 -40.82 -0.36 7.69 16 42 H 0.07 1.35 7.65 -51.93 -0.40 0.95 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.13 6.38 -51.93 -0.33 0.80 16 45 H 0.23 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -32.33 361.59 -5.71 -38.04 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.63 Total: 6.56 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 0.14 Total: 6.39 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.05 Total: -61.95 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.51 Total: -16.57 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -4.21 Total: 22.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.33 -5.71 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.752 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds