Wall clock time and date at job start Tue Mar 31 2020 14:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.46997 * 2 1 4 4 C 1.35349 * 117.00096 * 180.02562 * 3 2 1 5 5 N 1.30551 * 125.44993 * 180.02562 * 4 3 2 6 6 C 1.36334 * 108.38329 * 179.97438 * 5 4 3 7 7 C 1.47359 * 126.40977 * 179.97438 * 6 5 4 8 8 O 1.21619 * 119.99858 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00132 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99872 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.50014 * 324.93164 * 10 9 7 12 12 C 1.53042 * 109.50001 * 85.00123 * 10 9 7 13 13 C 1.53037 * 109.53933 * 181.31831 * 12 10 9 14 14 C 1.53196 * 109.31155 * 298.63032 * 13 12 10 15 15 N 1.46932 * 108.77470 * 54.63667 * 14 13 12 16 16 C 1.36937 * 120.63229 * 126.40932 * 15 14 13 17 17 H 1.08002 * 119.99971 * 209.00920 * 16 15 14 18 18 C 1.38816 * 119.99922 * 29.01130 * 16 15 14 19 19 N 1.31622 * 119.99587 * 15.02305 * 18 16 15 20 20 Si 1.86793 * 120.00056 * 195.02972 * 18 16 15 21 21 H 1.48494 * 109.47238 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47511 * 119.99688 * 20 18 16 23 23 H 1.48509 * 109.46976 * 239.99701 * 20 18 16 24 24 C 1.46926 * 118.73839 * 306.39525 * 15 14 13 25 25 H 1.09004 * 109.58336 * 293.81669 * 24 15 14 26 26 C 1.53002 * 109.58730 * 173.39554 * 24 15 14 27 27 C 1.35919 * 107.17475 * 359.97438 * 6 5 4 28 28 O 1.34211 * 125.44576 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47148 * 59.99695 * 1 2 3 30 30 H 1.09004 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47423 * 299.99615 * 1 2 3 32 32 H 1.08999 * 109.47059 * 240.00540 * 2 1 3 33 33 H 1.08999 * 109.47148 * 120.00305 * 2 1 3 34 34 H 0.96994 * 120.00206 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.45729 * 301.33965 * 12 10 9 36 36 H 1.08998 * 109.46103 * 61.29081 * 12 10 9 37 37 H 1.08996 * 109.50128 * 58.58326 * 13 12 10 38 38 H 1.08997 * 109.50020 * 178.68700 * 13 12 10 39 39 H 1.08999 * 109.58784 * 174.42214 * 14 13 12 40 40 H 1.08993 * 109.58874 * 294.85376 * 14 13 12 41 41 H 0.97007 * 119.99827 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.46606 * 300.70164 * 26 24 15 43 43 H 1.08995 * 109.46946 * 60.70582 * 26 24 15 44 44 H 1.09002 * 109.47094 * 180.70978 * 26 24 15 45 45 H 1.07992 * 126.45376 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9594 2.6783 -0.0001 6 6 5.3039 2.4524 -0.0004 7 6 6.3629 3.4771 -0.0006 8 8 7.5323 3.1429 -0.0012 9 7 6.0357 4.7845 -0.0001 10 6 7.0886 5.8032 -0.0009 11 1 7.9354 5.4516 0.5887 12 6 7.5419 6.0682 -1.4384 13 6 8.6645 7.1082 -1.4375 14 6 8.1392 8.4204 -0.8466 15 7 7.5690 8.1469 0.4797 16 6 7.9834 8.8540 1.5767 17 1 7.9556 8.3979 2.5553 18 6 8.4391 10.1571 1.4309 19 7 8.2041 10.8155 0.3158 20 14 9.3861 10.9759 2.8173 21 1 9.5155 10.0299 3.9546 22 1 10.7374 11.3588 2.3352 23 1 8.6576 12.1903 3.2646 24 6 6.5454 7.1004 0.6064 25 1 5.6444 7.4042 0.0735 26 6 6.2198 6.8778 2.0848 27 6 5.4846 1.1053 -0.0003 28 8 4.2630 0.5428 -0.0016 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.1031 5.0510 0.0008 35 1 7.9060 5.1411 -1.8811 36 1 6.7004 6.4427 -2.0213 37 1 9.4966 6.7450 -0.8344 38 1 9.0028 7.2793 -2.4595 39 1 8.9589 9.1326 -0.7520 40 1 7.3682 8.8317 -1.4979 41 1 8.5229 11.7260 0.2138 42 1 7.1244 6.5803 2.6151 43 1 5.8336 7.8018 2.5148 44 1 5.4696 6.0925 2.1773 45 1 6.4308 0.5848 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993534955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:01 Heat of formation + Delta-G solvation = -26.231198 kcal Electronic energy + Delta-G solvation = -27620.385295 eV Core-core repulsion = 23641.020232 eV Total energy + Delta-G solvation = -3979.365064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.66927 -39.70260 -39.23013 -37.58043 -35.15409 -34.26232 -32.54171 -32.36805 -31.59850 -29.87012 -29.07624 -26.30844 -25.06815 -24.51230 -23.88230 -22.70803 -21.73807 -20.64071 -20.40726 -19.62317 -18.87592 -17.85793 -17.34301 -16.59492 -16.33912 -15.98277 -15.67419 -15.30395 -14.88912 -14.63119 -14.12318 -13.75635 -13.67204 -13.49222 -13.39501 -13.31418 -13.23427 -12.77124 -12.50752 -12.27864 -11.81498 -11.66934 -11.49789 -11.16979 -11.04401 -10.99026 -10.89192 -10.72021 -10.51896 -10.26236 -10.18550 -10.01908 -9.98479 -9.64610 -9.34236 -8.95459 -8.61843 -8.41943 -6.63879 -5.75798 -3.19954 0.93914 1.60313 1.88506 2.43311 3.27669 3.36241 3.39652 3.47799 3.49935 4.27611 4.28569 4.31095 4.52872 4.60269 4.67295 4.87761 5.15333 5.18546 5.26714 5.33495 5.43488 5.47919 5.54478 5.59458 5.67059 5.83958 6.01942 6.13707 6.27015 6.36294 6.38403 6.48448 6.57677 6.65881 6.74864 6.79991 6.88790 7.03714 7.11204 7.27414 7.44673 7.71919 7.79151 7.85535 8.34927 8.48632 9.23852 9.86450 10.42790 11.32822 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023013 B = 0.002576 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.412388 B =10867.067367 C =11300.474504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.381 3.619 5 N -0.453 5.453 6 C -0.040 4.040 7 C 0.599 3.401 8 O -0.538 6.538 9 N -0.696 5.696 10 C 0.129 3.871 11 H 0.088 0.912 12 C -0.117 4.117 13 C -0.140 4.140 14 C 0.168 3.832 15 N -0.582 5.582 16 C -0.249 4.249 17 H 0.071 0.929 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.167 3.833 25 H 0.030 0.970 26 C -0.138 4.138 27 C -0.003 4.003 28 O -0.227 6.227 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.406 0.594 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.019 0.981 41 H 0.253 0.747 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.209 -22.504 -2.418 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.153 6.153 4 C 0.135 3.865 5 N -0.199 5.199 6 C -0.159 4.159 7 C 0.383 3.617 8 O -0.415 6.415 9 N -0.345 5.345 10 C 0.024 3.976 11 H 0.106 0.894 12 C -0.156 4.156 13 C -0.179 4.179 14 C 0.043 3.957 15 N -0.306 5.306 16 C -0.378 4.378 17 H 0.089 0.911 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.060 3.940 25 H 0.047 0.953 26 C -0.195 4.195 27 C -0.075 4.075 28 O -0.119 6.119 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.242 0.758 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -11.880 -21.868 -2.430 25.005 hybrid contribution 0.281 -0.295 0.553 0.687 sum -11.600 -22.163 -1.877 25.085 Atomic orbital electron populations 1.21815 0.91213 1.03628 1.04296 1.23052 0.96875 0.79410 1.03016 1.86392 1.08973 1.30742 1.89227 1.23304 0.83450 0.81619 0.98159 1.71142 1.03989 1.21441 1.23326 1.21864 0.90216 0.94182 1.09684 1.16645 0.86004 0.81962 0.77104 1.90831 1.17862 1.81424 1.51411 1.45990 1.11496 1.04891 1.72120 1.21890 0.90128 0.88207 0.97362 0.89355 1.21774 0.99042 0.98812 0.95979 1.22184 0.97520 0.98341 0.99901 1.20866 0.97836 0.92306 0.84708 1.44061 1.42025 1.38961 1.05507 1.19227 1.37344 0.93068 0.88194 0.91091 1.25081 1.01445 0.95868 0.97245 1.70036 1.47802 1.10663 1.26231 0.86225 0.79632 0.79202 0.81736 1.20247 1.21609 1.21794 1.20563 0.91650 0.87382 0.94450 0.95272 1.21827 1.00405 1.00727 0.96541 1.24959 0.85746 0.92948 1.03887 1.84379 1.16280 1.39196 1.72025 0.90916 0.89465 0.90905 0.90825 0.90807 0.75849 0.93124 0.92626 0.92477 0.92965 0.89194 0.96277 0.93738 0.92661 0.91739 0.94138 0.74791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 10.28 37.16 0.38 -0.19 16 2 C 0.05 0.29 6.38 37.16 0.24 0.52 16 3 O -0.24 -2.41 10.19 -40.97 -0.42 -2.83 16 4 C 0.38 4.44 8.98 52.22 0.47 4.91 16 5 N -0.45 -6.30 11.10 -11.71 -0.13 -6.43 16 6 C -0.04 -0.55 6.99 -82.99 -0.58 -1.13 16 7 C 0.60 9.71 7.78 -12.55 -0.10 9.62 16 8 O -0.54 -9.99 16.55 5.26 0.09 -9.90 16 9 N -0.70 -11.35 4.57 -54.78 -0.25 -11.60 16 10 C 0.13 2.43 1.99 -67.81 -0.14 2.30 16 11 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 12 C -0.12 -2.17 5.46 -26.69 -0.15 -2.32 16 13 C -0.14 -2.79 6.08 -26.61 -0.16 -2.95 16 14 C 0.17 4.03 5.29 -3.71 -0.02 4.01 16 15 N -0.58 -14.38 2.99 -164.77 -0.49 -14.87 16 16 C -0.25 -6.67 8.61 -15.06 -0.13 -6.80 16 17 H 0.07 1.87 6.20 -52.49 -0.33 1.55 16 18 C 0.00 0.06 4.96 -17.43 -0.09 -0.03 16 19 N -0.90 -25.99 11.14 55.49 0.62 -25.37 16 20 Si 0.90 21.71 29.58 -169.99 -5.03 16.68 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.17 3.48 3.03 -67.60 -0.20 3.27 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 26 C -0.14 -2.66 7.84 37.16 0.29 -2.37 16 27 C 0.00 -0.04 11.93 29.90 0.36 0.32 16 28 O -0.23 -2.31 10.20 -17.76 -0.18 -2.49 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.41 6.17 8.33 -40.82 -0.34 5.83 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.05 1.11 7.40 -51.93 -0.38 0.72 16 43 H 0.06 1.32 7.66 -51.93 -0.40 0.92 16 44 H 0.04 0.67 7.78 -51.93 -0.40 0.27 16 45 H 0.24 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -31.92 370.18 -6.81 -38.73 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.77 Total: 3.34 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 0.17 Total: 9.15 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.26 Total: -58.27 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.51 Total: -15.22 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.92 -6.81 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.496 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds