Wall clock time and date at job start Tue Mar 31 2020 14:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.46997 * 2 1 4 4 C 1.35349 * 117.00096 * 180.02562 * 3 2 1 5 5 N 1.30551 * 125.44993 * 180.02562 * 4 3 2 6 6 C 1.36334 * 108.38329 * 179.97438 * 5 4 3 7 7 C 1.47359 * 126.40977 * 179.97438 * 6 5 4 8 8 O 1.21619 * 119.99858 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00132 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99872 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.50014 * 324.93164 * 10 9 7 12 12 C 1.53042 * 109.50001 * 85.00123 * 10 9 7 13 13 C 1.53037 * 109.53933 * 181.31831 * 12 10 9 14 14 C 1.53196 * 109.31155 * 298.63032 * 13 12 10 15 15 N 1.46932 * 108.77470 * 54.63667 * 14 13 12 16 16 C 1.36937 * 120.63229 * 126.40932 * 15 14 13 17 17 H 1.08002 * 119.99971 * 209.00920 * 16 15 14 18 18 C 1.38816 * 119.99922 * 29.01130 * 16 15 14 19 19 N 1.31622 * 119.99587 * 15.02305 * 18 16 15 20 20 Si 1.86793 * 120.00056 * 195.02972 * 18 16 15 21 21 H 1.48494 * 109.47238 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47511 * 119.99688 * 20 18 16 23 23 H 1.48509 * 109.46976 * 239.99701 * 20 18 16 24 24 C 1.46926 * 118.73839 * 306.39525 * 15 14 13 25 25 H 1.09004 * 109.58336 * 293.81669 * 24 15 14 26 26 C 1.53002 * 109.58730 * 173.39554 * 24 15 14 27 27 C 1.35919 * 107.17475 * 359.97438 * 6 5 4 28 28 O 1.34211 * 125.44576 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47148 * 59.99695 * 1 2 3 30 30 H 1.09004 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47423 * 299.99615 * 1 2 3 32 32 H 1.08999 * 109.47059 * 240.00540 * 2 1 3 33 33 H 1.08999 * 109.47148 * 120.00305 * 2 1 3 34 34 H 0.96994 * 120.00206 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.45729 * 301.33965 * 12 10 9 36 36 H 1.08998 * 109.46103 * 61.29081 * 12 10 9 37 37 H 1.08996 * 109.50128 * 58.58326 * 13 12 10 38 38 H 1.08997 * 109.50020 * 178.68700 * 13 12 10 39 39 H 1.08999 * 109.58784 * 174.42214 * 14 13 12 40 40 H 1.08993 * 109.58874 * 294.85376 * 14 13 12 41 41 H 0.97007 * 119.99827 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.46606 * 300.70164 * 26 24 15 43 43 H 1.08995 * 109.46946 * 60.70582 * 26 24 15 44 44 H 1.09002 * 109.47094 * 180.70978 * 26 24 15 45 45 H 1.07992 * 126.45376 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9594 2.6783 -0.0001 6 6 5.3039 2.4524 -0.0004 7 6 6.3629 3.4771 -0.0006 8 8 7.5323 3.1429 -0.0012 9 7 6.0357 4.7845 -0.0001 10 6 7.0886 5.8032 -0.0009 11 1 7.9354 5.4516 0.5887 12 6 7.5419 6.0682 -1.4384 13 6 8.6645 7.1082 -1.4375 14 6 8.1392 8.4204 -0.8466 15 7 7.5690 8.1469 0.4797 16 6 7.9834 8.8540 1.5767 17 1 7.9556 8.3979 2.5553 18 6 8.4391 10.1571 1.4309 19 7 8.2041 10.8155 0.3158 20 14 9.3861 10.9759 2.8173 21 1 9.5155 10.0299 3.9546 22 1 10.7374 11.3588 2.3352 23 1 8.6576 12.1903 3.2646 24 6 6.5454 7.1004 0.6064 25 1 5.6444 7.4042 0.0735 26 6 6.2198 6.8778 2.0848 27 6 5.4846 1.1053 -0.0003 28 8 4.2630 0.5428 -0.0016 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.1031 5.0510 0.0008 35 1 7.9060 5.1411 -1.8811 36 1 6.7004 6.4427 -2.0213 37 1 9.4966 6.7450 -0.8344 38 1 9.0028 7.2793 -2.4595 39 1 8.9589 9.1326 -0.7520 40 1 7.3682 8.8317 -1.4979 41 1 8.5229 11.7260 0.2138 42 1 7.1244 6.5803 2.6151 43 1 5.8336 7.8018 2.5148 44 1 5.4696 6.0925 2.1773 45 1 6.4308 0.5848 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993534955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:00 Heat of formation + Delta-G solvation = -50.440750 kcal Electronic energy + Delta-G solvation = -27621.435100 eV Core-core repulsion = 23641.020232 eV Total energy + Delta-G solvation = -3980.414869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.54658 -41.03628 -39.97301 -39.18238 -36.12086 -35.87260 -34.21795 -33.40534 -32.85915 -31.13862 -30.42935 -27.96057 -26.91445 -25.61597 -24.55400 -23.80929 -23.01506 -22.31358 -21.56417 -21.12630 -20.02757 -18.64426 -18.52055 -18.13367 -17.42058 -17.29265 -16.69676 -16.58544 -16.08276 -15.95750 -15.62558 -15.54303 -15.15173 -14.84521 -14.56884 -14.46154 -14.25695 -13.91579 -13.55867 -13.34709 -13.25052 -12.82935 -12.72774 -12.66334 -12.54066 -12.50975 -12.36280 -11.99480 -11.92274 -11.82322 -11.80149 -11.74266 -11.66203 -11.32168 -11.09013 -10.52161 -10.10534 -9.74124 -8.64861 -7.83849 -5.30116 0.02542 0.83727 0.91179 1.47310 1.49757 1.59398 1.65686 2.06154 2.19728 2.54642 3.30331 3.31603 3.64690 3.73571 3.88807 3.93995 3.96794 4.01987 4.10299 4.22592 4.27707 4.36893 4.39151 4.52028 4.62231 4.65158 4.76595 4.85300 4.87926 4.90190 4.92042 5.05062 5.15049 5.19626 5.20897 5.27731 5.42336 5.46831 5.59583 5.64506 5.72274 5.78660 6.30945 6.43385 6.59241 7.08698 7.18185 7.87350 8.39361 9.23296 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023013 B = 0.002576 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.412388 B =10867.067367 C =11300.474504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.257 6.257 4 C 0.385 3.615 5 N -0.483 5.483 6 C -0.074 4.074 7 C 0.603 3.397 8 O -0.564 6.564 9 N -0.693 5.693 10 C 0.146 3.854 11 H 0.068 0.932 12 C -0.110 4.110 13 C -0.128 4.128 14 C 0.174 3.826 15 N -0.600 5.600 16 C -0.251 4.251 17 H 0.073 0.927 18 C -0.051 4.051 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.293 1.293 24 C 0.164 3.836 25 H 0.028 0.972 26 C -0.128 4.128 27 C 0.031 3.969 28 O -0.215 6.215 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.413 0.587 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.002 0.998 41 H 0.248 0.752 42 H 0.045 0.955 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.037 -25.256 -2.185 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.166 6.166 4 C 0.138 3.862 5 N -0.230 5.230 6 C -0.192 4.192 7 C 0.389 3.611 8 O -0.444 6.444 9 N -0.342 5.342 10 C 0.040 3.960 11 H 0.086 0.914 12 C -0.149 4.149 13 C -0.168 4.168 14 C 0.048 3.952 15 N -0.323 5.323 16 C -0.381 4.381 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.792 3.208 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.220 1.220 24 C 0.057 3.943 25 H 0.046 0.954 26 C -0.185 4.185 27 C -0.042 4.042 28 O -0.105 6.105 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.249 0.751 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -12.749 -24.660 -2.191 27.847 hybrid contribution 0.423 0.426 0.468 0.761 sum -12.327 -24.234 -1.722 27.243 Atomic orbital electron populations 1.21867 0.89882 1.05073 1.03825 1.23444 0.97889 0.77742 1.04190 1.86427 1.07876 1.33334 1.88925 1.23311 0.84183 0.81406 0.97253 1.71025 1.04273 1.22902 1.24773 1.21487 0.89805 0.94611 1.13291 1.16865 0.86264 0.81990 0.75945 1.90811 1.19141 1.81805 1.52653 1.45812 1.11114 1.04768 1.72541 1.21421 0.89945 0.87623 0.96992 0.91375 1.21701 0.98640 0.98615 0.95914 1.22013 0.97621 0.96483 1.00638 1.20679 0.96253 0.93636 0.84588 1.44295 1.43227 1.39614 1.05203 1.19501 1.36466 0.93170 0.88929 0.90895 1.25788 1.02812 0.96635 0.99407 1.70180 1.49199 1.10695 1.28013 0.85265 0.77963 0.78116 0.79475 1.19201 1.21887 1.22028 1.20689 0.90692 0.87242 0.95642 0.95403 1.21721 1.00649 1.00893 0.95232 1.25565 0.86643 0.92006 0.99990 1.84430 1.15975 1.38537 1.71579 0.91362 0.87000 0.91399 0.89614 0.89652 0.75098 0.92107 0.91983 0.93226 0.90744 0.92330 0.98019 0.94241 0.93570 0.93146 0.91364 0.71650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 71.98 0.74 -0.06 16 2 C 0.04 0.37 6.38 71.98 0.46 0.82 16 3 O -0.26 -4.62 10.19 -64.18 -0.65 -5.27 16 4 C 0.39 8.24 8.98 130.43 1.17 9.41 16 5 N -0.48 -12.74 11.10 -419.39 -4.65 -17.39 16 6 C -0.07 -1.90 6.99 40.31 0.28 -1.62 16 7 C 0.60 18.79 7.78 86.64 0.67 19.46 16 8 O -0.56 -20.25 16.55 -4.09 -0.07 -20.31 16 9 N -0.69 -21.91 4.57 -445.48 -2.04 -23.94 16 10 C 0.15 5.42 1.99 45.07 0.09 5.51 16 11 H 0.07 2.84 7.58 -2.39 -0.02 2.83 16 12 C -0.11 -3.96 5.46 30.62 0.17 -3.80 16 13 C -0.13 -5.07 6.08 30.67 0.19 -4.88 16 14 C 0.17 8.51 5.29 86.36 0.46 8.97 16 15 N -0.60 -30.08 2.99 -675.20 -2.02 -32.10 16 16 C -0.25 -13.62 8.61 84.03 0.72 -12.90 16 17 H 0.07 3.87 6.20 -2.91 -0.02 3.85 16 18 C -0.05 -2.87 4.96 84.86 0.42 -2.45 16 19 N -0.93 -55.28 11.14 21.65 0.24 -55.04 16 20 Si 0.96 45.32 29.58 68.60 2.03 47.35 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 24 C 0.16 6.82 3.03 44.98 0.14 6.96 16 25 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 26 C -0.13 -4.88 7.84 71.98 0.56 -4.32 16 27 C 0.03 0.56 11.93 67.28 0.80 1.36 16 28 O -0.21 -3.73 10.20 18.86 0.19 -3.54 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 31 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.41 12.11 8.33 -92.71 -0.77 11.34 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.06 3.23 6.06 -2.39 -0.01 3.22 16 40 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.25 14.26 8.31 -92.70 -0.77 13.48 16 42 H 0.05 1.83 7.40 -2.39 -0.02 1.81 16 43 H 0.05 2.05 7.66 -2.39 -0.02 2.03 16 44 H 0.07 2.20 7.78 -2.39 -0.02 2.18 16 45 H 0.27 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -69.70 370.18 0.14 -69.56 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.24 Total: 18.21 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 6.87 Total: 22.46 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -8.47 Total: -128.47 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.53 Total: -29.12 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -69.70 0.14 -69.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.122 kcal (2) G-P(sol) polarization free energy of solvation -69.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds