Wall clock time and date at job start Tue Mar 31 2020 14:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47399 * 2 1 4 4 C 1.35352 * 116.99980 * 179.97438 * 3 2 1 5 5 N 1.30552 * 125.44604 * 179.97438 * 4 3 2 6 6 C 1.36329 * 108.38780 * 180.02562 * 5 4 3 7 7 C 1.47367 * 126.41483 * 179.97438 * 6 5 4 8 8 O 1.21620 * 119.99506 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99710 * 0.02969 * 7 6 5 10 10 C 1.46507 * 119.99497 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.49864 * 324.93215 * 10 9 7 12 12 C 1.53036 * 109.49858 * 84.99679 * 10 9 7 13 13 C 1.53041 * 109.53863 * 58.61795 * 12 10 9 14 14 C 1.53190 * 109.31202 * 61.36368 * 13 12 10 15 15 N 1.46926 * 108.77649 * 305.36587 * 14 13 12 16 16 C 1.36942 * 120.63119 * 233.58329 * 15 14 13 17 17 H 1.07994 * 119.99757 * 150.44835 * 16 15 14 18 18 C 1.38803 * 119.99901 * 330.45070 * 16 15 14 19 19 N 1.31627 * 120.00440 * 344.27961 * 18 16 15 20 20 Si 1.86807 * 120.00016 * 164.28036 * 18 16 15 21 21 H 1.48498 * 109.47151 * 266.30609 * 20 18 16 22 22 H 1.48498 * 109.46741 * 26.30055 * 20 18 16 23 23 H 1.48497 * 109.47281 * 146.30033 * 20 18 16 24 24 C 1.46919 * 118.73788 * 53.86366 * 15 14 13 25 25 H 1.09000 * 109.59079 * 65.92297 * 24 15 14 26 26 C 1.53008 * 109.58924 * 186.35353 * 24 15 14 27 27 C 1.35916 * 107.16870 * 0.22801 * 6 5 4 28 28 O 1.34201 * 125.45185 * 0.04007 * 4 3 2 29 29 H 1.09000 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46751 * 300.00070 * 1 2 3 31 31 H 1.08995 * 109.46996 * 59.99988 * 1 2 3 32 32 H 1.09003 * 109.47399 * 239.99550 * 2 1 3 33 33 H 1.09006 * 109.47464 * 120.00063 * 2 1 3 34 34 H 0.96998 * 120.00830 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46143 * 298.59734 * 12 10 9 36 36 H 1.09003 * 109.44990 * 178.62968 * 12 10 9 37 37 H 1.09001 * 109.49567 * 301.41446 * 13 12 10 38 38 H 1.08994 * 109.52617 * 181.33132 * 13 12 10 39 39 H 1.09004 * 109.58998 * 185.57639 * 14 13 12 40 40 H 1.08997 * 109.70471 * 65.22174 * 14 13 12 41 41 H 0.96995 * 119.99891 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.46897 * 59.99342 * 26 24 15 43 43 H 1.08997 * 109.47044 * 179.97438 * 26 24 15 44 44 H 1.08993 * 109.46772 * 299.99546 * 26 24 15 45 45 H 1.08001 * 126.45283 * 179.74579 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3483 1.5245 0.0005 5 7 3.9596 2.6781 0.0001 6 6 5.3040 2.4523 0.0004 7 6 6.3632 3.4770 -0.0005 8 8 7.5325 3.1427 -0.0007 9 7 6.0358 4.7843 -0.0010 10 6 7.0888 5.8030 -0.0012 11 1 7.9350 5.4517 0.5893 12 6 7.5436 6.0672 -1.4384 13 6 6.3492 6.5291 -2.2764 14 6 5.7977 7.8351 -1.6959 15 7 5.4932 7.6289 -0.2734 16 6 4.2519 7.9239 0.2243 17 1 3.8641 7.3737 1.0687 18 6 3.4924 8.9300 -0.3567 19 7 4.0601 9.7996 -1.1655 20 14 1.6645 9.0501 0.0093 21 1 0.9016 8.3203 -1.0350 22 1 1.3852 8.4481 1.3377 23 1 1.2537 10.4771 0.0162 24 6 6.5475 7.1061 0.6062 25 1 7.3521 7.8370 0.6865 26 6 5.9657 6.8249 1.9932 27 6 5.4846 1.1052 -0.0043 28 8 4.2631 0.5427 0.0003 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.1032 5.0509 -0.0011 35 1 7.9532 5.1511 -1.8639 36 1 8.3097 6.8426 -1.4399 37 1 5.5723 5.7648 -2.2548 38 1 6.6683 6.6945 -3.3054 39 1 4.8884 8.1161 -2.2273 40 1 6.5406 8.6259 -1.7995 41 1 3.5294 10.5028 -1.5711 42 1 5.1659 6.0891 1.9093 43 1 6.7493 6.4367 2.6439 44 1 5.5675 7.7480 2.4141 45 1 6.4309 0.5846 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993534957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:04 Heat of formation + Delta-G solvation = -24.507857 kcal Electronic energy + Delta-G solvation = -28494.994910 eV Core-core repulsion = 24515.704576 eV Total energy + Delta-G solvation = -3979.290334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.49899 -39.64975 -39.09105 -37.51319 -34.97678 -33.87920 -32.37314 -32.21220 -31.58232 -29.76182 -29.16391 -26.31085 -24.99650 -24.44841 -23.75518 -22.54337 -21.74501 -20.78530 -20.42783 -19.02768 -18.64101 -17.69239 -17.25211 -16.46371 -16.35966 -15.83295 -15.31414 -15.19733 -14.80485 -14.69751 -14.03336 -13.78782 -13.55392 -13.37399 -13.23368 -13.12783 -13.01559 -12.90282 -12.51586 -12.13074 -11.80262 -11.64623 -11.23922 -11.18618 -10.96476 -10.91095 -10.75635 -10.65036 -10.56434 -10.44973 -10.05558 -9.95999 -9.86703 -9.59773 -9.24758 -8.79875 -8.48406 -8.38324 -6.61484 -5.74734 -3.19802 1.09200 1.77145 2.07623 2.60201 3.41858 3.48529 3.49151 3.50471 3.53348 4.42040 4.42382 4.51468 4.53543 4.73545 4.82372 5.04816 5.29448 5.32788 5.35151 5.38928 5.43690 5.61522 5.62271 5.64060 5.78601 5.79428 6.01384 6.18102 6.27882 6.35690 6.46672 6.53949 6.56731 6.72487 6.73328 6.82930 6.98655 7.01957 7.12657 7.43700 7.47520 7.71911 7.86504 8.05597 8.48696 8.56105 9.24838 9.87487 10.44201 11.33257 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.004528 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.568202 B = 6182.013974 C = 8119.136655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.243 6.243 4 C 0.380 3.620 5 N -0.446 5.446 6 C -0.037 4.037 7 C 0.595 3.405 8 O -0.551 6.551 9 N -0.677 5.677 10 C 0.131 3.869 11 H 0.078 0.922 12 C -0.120 4.120 13 C -0.142 4.142 14 C 0.172 3.828 15 N -0.586 5.586 16 C -0.252 4.252 17 H 0.071 0.929 18 C 0.006 3.994 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.278 1.278 23 H -0.293 1.293 24 C 0.160 3.840 25 H 0.042 0.958 26 C -0.137 4.137 27 C -0.009 4.009 28 O -0.229 6.229 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.419 0.581 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.018 0.982 41 H 0.252 0.748 42 H 0.055 0.945 43 H 0.039 0.961 44 H 0.064 0.936 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -19.482 1.685 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.152 6.152 4 C 0.133 3.867 5 N -0.191 5.191 6 C -0.157 4.157 7 C 0.379 3.621 8 O -0.431 6.431 9 N -0.326 5.326 10 C 0.025 3.975 11 H 0.096 0.904 12 C -0.159 4.159 13 C -0.181 4.181 14 C 0.046 3.954 15 N -0.309 5.309 16 C -0.381 4.381 17 H 0.089 0.911 18 C -0.192 4.192 19 N -0.545 5.545 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.203 1.203 23 H -0.220 1.220 24 C 0.053 3.947 25 H 0.059 0.941 26 C -0.195 4.195 27 C -0.082 4.082 28 O -0.121 6.121 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.258 0.742 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.036 0.964 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.881 -18.854 1.622 18.944 hybrid contribution -1.120 -0.599 0.009 1.270 sum -2.000 -19.453 1.632 19.623 Atomic orbital electron populations 1.21811 0.91287 1.03491 1.04387 1.23030 0.96861 0.79562 1.02866 1.86419 1.08989 1.30520 1.89241 1.23343 0.83441 0.81574 0.98301 1.71245 1.03950 1.21213 1.22708 1.21878 0.90338 0.94105 1.09333 1.16686 0.85927 0.82171 0.77305 1.90781 1.17883 1.81676 1.52757 1.45878 1.12377 1.04009 1.70383 1.21729 0.89622 0.89204 0.96976 0.90380 1.21773 0.98353 1.00259 0.95512 1.22151 0.97162 1.01217 0.97557 1.20788 0.99613 0.90627 0.84358 1.44178 1.08529 1.75191 1.03027 1.19180 0.91142 1.12508 1.15312 0.91140 1.25072 0.98600 0.95269 1.00305 1.70032 1.34230 1.15860 1.34421 0.86325 0.85877 0.76676 0.78195 1.21485 1.20348 1.21962 1.20807 0.92354 0.91050 0.90516 0.94073 1.21797 0.99903 1.02034 0.95751 1.24890 0.85715 0.92950 1.04601 1.84362 1.16268 1.39294 1.72143 0.89567 0.90896 0.90875 0.90908 0.90916 0.74228 0.93077 0.91747 0.92742 0.93446 0.89622 0.96360 0.93756 0.92640 0.94216 0.91674 0.74950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.05 0.39 6.38 37.16 0.24 0.63 16 3 O -0.24 -3.01 10.19 -40.98 -0.42 -3.42 16 4 C 0.38 5.33 8.98 52.22 0.47 5.79 16 5 N -0.45 -7.48 11.10 -11.71 -0.13 -7.61 16 6 C -0.04 -0.59 6.99 -82.99 -0.58 -1.17 16 7 C 0.59 10.49 7.78 -12.55 -0.10 10.39 16 8 O -0.55 -10.39 16.55 5.26 0.09 -10.31 16 9 N -0.68 -12.46 3.47 -54.56 -0.19 -12.65 16 10 C 0.13 2.41 2.33 -67.58 -0.16 2.25 16 11 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 12 C -0.12 -2.18 5.57 -26.69 -0.15 -2.33 16 13 C -0.14 -2.80 5.93 -26.61 -0.16 -2.95 16 14 C 0.17 4.03 5.28 -3.71 -0.02 4.01 16 15 N -0.59 -13.94 2.64 -164.52 -0.43 -14.37 16 16 C -0.25 -6.58 8.57 -15.06 -0.13 -6.71 16 17 H 0.07 1.82 6.24 -52.49 -0.33 1.49 16 18 C 0.01 0.17 4.94 -17.43 -0.09 0.09 16 19 N -0.90 -25.73 11.23 55.49 0.62 -25.10 16 20 Si 0.90 21.69 29.58 -169.99 -5.03 16.66 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 C 0.16 3.25 3.22 -67.37 -0.22 3.04 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 C -0.14 -2.60 7.75 37.16 0.29 -2.31 16 27 C -0.01 -0.11 11.93 29.90 0.36 0.24 16 28 O -0.23 -2.72 10.20 -17.74 -0.18 -2.90 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.42 8.39 7.52 -40.82 -0.31 8.09 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.05 1.13 7.53 -51.93 -0.39 0.73 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 2.27 6.13 -51.93 -0.32 1.95 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.05 1.08 6.42 -51.93 -0.33 0.74 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.31 7.62 -51.93 -0.40 0.92 16 45 H 0.23 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -31.07 367.19 -6.67 -37.74 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.67 Total: 5.96 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 0.14 Total: 10.48 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.13 Total: -59.73 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.51 Total: -16.64 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.07 -6.67 -37.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.233 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds