Wall clock time and date at job start Tue Mar 31 2020 14:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47399 * 2 1 4 4 C 1.35352 * 116.99980 * 179.97438 * 3 2 1 5 5 N 1.30552 * 125.44604 * 179.97438 * 4 3 2 6 6 C 1.36329 * 108.38780 * 180.02562 * 5 4 3 7 7 C 1.47367 * 126.41483 * 179.97438 * 6 5 4 8 8 O 1.21620 * 119.99506 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99710 * 0.02969 * 7 6 5 10 10 C 1.46507 * 119.99497 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.49864 * 324.93215 * 10 9 7 12 12 C 1.53036 * 109.49858 * 84.99679 * 10 9 7 13 13 C 1.53041 * 109.53863 * 58.61795 * 12 10 9 14 14 C 1.53190 * 109.31202 * 61.36368 * 13 12 10 15 15 N 1.46926 * 108.77649 * 305.36587 * 14 13 12 16 16 C 1.36942 * 120.63119 * 233.58329 * 15 14 13 17 17 H 1.07994 * 119.99757 * 150.44835 * 16 15 14 18 18 C 1.38803 * 119.99901 * 330.45070 * 16 15 14 19 19 N 1.31627 * 120.00440 * 344.27961 * 18 16 15 20 20 Si 1.86807 * 120.00016 * 164.28036 * 18 16 15 21 21 H 1.48498 * 109.47151 * 266.30609 * 20 18 16 22 22 H 1.48498 * 109.46741 * 26.30055 * 20 18 16 23 23 H 1.48497 * 109.47281 * 146.30033 * 20 18 16 24 24 C 1.46919 * 118.73788 * 53.86366 * 15 14 13 25 25 H 1.09000 * 109.59079 * 65.92297 * 24 15 14 26 26 C 1.53008 * 109.58924 * 186.35353 * 24 15 14 27 27 C 1.35916 * 107.16870 * 0.22801 * 6 5 4 28 28 O 1.34201 * 125.45185 * 0.04007 * 4 3 2 29 29 H 1.09000 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46751 * 300.00070 * 1 2 3 31 31 H 1.08995 * 109.46996 * 59.99988 * 1 2 3 32 32 H 1.09003 * 109.47399 * 239.99550 * 2 1 3 33 33 H 1.09006 * 109.47464 * 120.00063 * 2 1 3 34 34 H 0.96998 * 120.00830 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46143 * 298.59734 * 12 10 9 36 36 H 1.09003 * 109.44990 * 178.62968 * 12 10 9 37 37 H 1.09001 * 109.49567 * 301.41446 * 13 12 10 38 38 H 1.08994 * 109.52617 * 181.33132 * 13 12 10 39 39 H 1.09004 * 109.58998 * 185.57639 * 14 13 12 40 40 H 1.08997 * 109.70471 * 65.22174 * 14 13 12 41 41 H 0.96995 * 119.99891 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.46897 * 59.99342 * 26 24 15 43 43 H 1.08997 * 109.47044 * 179.97438 * 26 24 15 44 44 H 1.08993 * 109.46772 * 299.99546 * 26 24 15 45 45 H 1.08001 * 126.45283 * 179.74579 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3483 1.5245 0.0005 5 7 3.9596 2.6781 0.0001 6 6 5.3040 2.4523 0.0004 7 6 6.3632 3.4770 -0.0005 8 8 7.5325 3.1427 -0.0007 9 7 6.0358 4.7843 -0.0010 10 6 7.0888 5.8030 -0.0012 11 1 7.9350 5.4517 0.5893 12 6 7.5436 6.0672 -1.4384 13 6 6.3492 6.5291 -2.2764 14 6 5.7977 7.8351 -1.6959 15 7 5.4932 7.6289 -0.2734 16 6 4.2519 7.9239 0.2243 17 1 3.8641 7.3737 1.0687 18 6 3.4924 8.9300 -0.3567 19 7 4.0601 9.7996 -1.1655 20 14 1.6645 9.0501 0.0093 21 1 0.9016 8.3203 -1.0350 22 1 1.3852 8.4481 1.3377 23 1 1.2537 10.4771 0.0162 24 6 6.5475 7.1061 0.6062 25 1 7.3521 7.8370 0.6865 26 6 5.9657 6.8249 1.9932 27 6 5.4846 1.1052 -0.0043 28 8 4.2631 0.5427 0.0003 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.1032 5.0509 -0.0011 35 1 7.9532 5.1511 -1.8639 36 1 8.3097 6.8426 -1.4399 37 1 5.5723 5.7648 -2.2548 38 1 6.6683 6.6945 -3.3054 39 1 4.8884 8.1161 -2.2273 40 1 6.5406 8.6259 -1.7995 41 1 3.5294 10.5028 -1.5711 42 1 5.1659 6.0891 1.9093 43 1 6.7493 6.4367 2.6439 44 1 5.5675 7.7480 2.4141 45 1 6.4309 0.5846 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993534957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:03 Heat of formation + Delta-G solvation = -47.251335 kcal Electronic energy + Delta-G solvation = -28495.981141 eV Core-core repulsion = 24515.704576 eV Total energy + Delta-G solvation = -3980.276565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.52669 -41.06849 -39.98257 -39.08190 -36.06677 -35.59802 -33.97470 -33.36565 -32.85895 -31.22941 -30.45586 -27.95133 -26.85460 -25.59506 -24.54649 -23.78835 -23.16965 -22.37217 -21.70496 -20.26138 -20.11678 -18.64050 -18.44480 -18.23230 -17.40736 -17.08723 -16.61999 -16.51234 -16.11393 -16.07674 -15.67823 -15.37792 -15.05408 -14.70407 -14.51473 -14.44550 -14.22476 -13.93041 -13.57701 -13.54698 -12.96386 -12.89601 -12.71971 -12.67853 -12.51578 -12.45505 -12.31997 -12.17862 -11.91696 -11.83895 -11.79185 -11.66150 -11.38055 -11.23934 -11.01131 -10.48519 -10.01011 -9.70369 -8.59049 -7.80813 -5.26695 0.05419 0.84165 0.94400 1.47376 1.50480 1.57407 1.70821 2.20949 2.26169 2.54330 3.34800 3.40070 3.60938 3.75154 3.92208 3.95698 3.99190 4.08457 4.12657 4.22838 4.25961 4.39956 4.42499 4.57871 4.66872 4.67848 4.77375 4.84712 4.85452 4.95588 5.01431 5.05307 5.13483 5.17565 5.22526 5.35734 5.46944 5.56460 5.61074 5.66162 5.75868 5.80996 6.39581 6.46347 6.67596 7.15380 7.21829 7.91289 8.43474 9.25398 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.004528 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.568202 B = 6182.013974 C = 8119.136655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.261 6.261 4 C 0.383 3.617 5 N -0.489 5.489 6 C -0.078 4.078 7 C 0.599 3.401 8 O -0.565 6.565 9 N -0.683 5.683 10 C 0.139 3.861 11 H 0.091 0.909 12 C -0.114 4.114 13 C -0.127 4.127 14 C 0.179 3.821 15 N -0.597 5.597 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.046 4.046 19 N -0.933 5.933 20 Si 0.954 3.046 21 H -0.292 1.292 22 H -0.269 1.269 23 H -0.298 1.298 24 C 0.157 3.843 25 H 0.040 0.960 26 C -0.128 4.128 27 C 0.030 3.970 28 O -0.214 6.214 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.411 0.589 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.001 0.999 41 H 0.246 0.754 42 H 0.047 0.953 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -22.361 2.284 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.170 6.170 4 C 0.136 3.864 5 N -0.235 5.235 6 C -0.196 4.196 7 C 0.385 3.615 8 O -0.446 6.446 9 N -0.331 5.331 10 C 0.033 3.967 11 H 0.108 0.892 12 C -0.152 4.152 13 C -0.167 4.167 14 C 0.054 3.946 15 N -0.321 5.321 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.241 4.241 19 N -0.580 5.580 20 Si 0.784 3.216 21 H -0.219 1.219 22 H -0.194 1.194 23 H -0.225 1.225 24 C 0.050 3.950 25 H 0.058 0.942 26 C -0.185 4.185 27 C -0.043 4.043 28 O -0.105 6.105 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.247 0.753 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.019 0.981 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -0.488 -21.772 2.240 21.892 hybrid contribution -1.240 0.170 -0.153 1.261 sum -1.728 -21.602 2.087 21.771 Atomic orbital electron populations 1.21870 0.90009 1.05106 1.03696 1.23448 0.97837 0.77727 1.04241 1.86444 1.08059 1.33436 1.89012 1.23287 0.84166 0.81414 0.97519 1.71114 1.04867 1.23097 1.24431 1.21672 0.89789 0.95005 1.13092 1.16842 0.86247 0.82038 0.76346 1.90760 1.18496 1.81844 1.53542 1.45867 1.11649 1.04527 1.71077 1.21572 0.89810 0.88212 0.97112 0.89154 1.21727 0.97635 1.00884 0.94980 1.21952 0.97489 0.98592 0.98622 1.20568 0.97588 0.92040 0.84423 1.44338 1.08913 1.75171 1.03698 1.19418 0.92107 1.11416 1.14520 0.90991 1.25689 1.01826 0.95577 1.01050 1.70167 1.35120 1.16666 1.36026 0.85444 0.81999 0.76070 0.78109 1.21925 1.19389 1.22487 1.20964 0.91375 0.91828 0.90815 0.94195 1.21698 1.00480 1.01026 0.95343 1.25591 0.86620 0.91826 1.00230 1.84412 1.15990 1.38435 1.71625 0.86723 0.91517 0.91625 0.89579 0.89451 0.75270 0.92117 0.90714 0.93806 0.91760 0.93066 0.98138 0.94446 0.93395 0.91324 0.93343 0.71224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 71.98 0.74 -0.70 16 2 C 0.04 0.54 6.38 71.98 0.46 1.00 16 3 O -0.26 -6.16 10.19 -64.21 -0.65 -6.82 16 4 C 0.38 10.23 8.98 130.43 1.17 11.40 16 5 N -0.49 -16.12 11.10 -419.39 -4.65 -20.78 16 6 C -0.08 -2.33 6.99 40.31 0.28 -2.05 16 7 C 0.60 20.29 7.78 86.65 0.67 20.96 16 8 O -0.57 -20.08 16.55 -4.09 -0.07 -20.15 16 9 N -0.68 -24.60 3.47 -444.78 -1.55 -26.14 16 10 C 0.14 4.93 2.33 45.21 0.11 5.04 16 11 H 0.09 3.04 7.58 -2.39 -0.02 3.02 16 12 C -0.11 -3.95 5.57 30.62 0.17 -3.78 16 13 C -0.13 -4.99 5.93 30.67 0.18 -4.80 16 14 C 0.18 8.61 5.28 86.36 0.46 9.07 16 15 N -0.60 -28.78 2.64 -674.42 -1.78 -30.56 16 16 C -0.24 -12.95 8.57 84.03 0.72 -12.23 16 17 H 0.07 3.75 6.24 -2.91 -0.02 3.73 16 18 C -0.05 -2.55 4.94 84.86 0.42 -2.13 16 19 N -0.93 -54.95 11.23 21.65 0.24 -54.71 16 20 Si 0.95 45.54 29.58 68.60 2.03 47.56 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 C 0.16 6.28 3.22 45.13 0.15 6.42 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 C -0.13 -4.75 7.75 71.98 0.56 -4.19 16 27 C 0.03 0.64 11.93 67.28 0.80 1.44 16 28 O -0.21 -4.50 10.20 18.95 0.19 -4.31 16 29 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.41 16.48 7.52 -92.71 -0.70 15.79 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.04 1.80 7.53 -2.39 -0.02 1.79 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.05 2.81 6.13 -2.38 -0.01 2.80 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 42 H 0.05 1.84 6.42 -2.39 -0.02 1.82 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.05 1.93 7.62 -2.39 -0.02 1.92 16 45 H 0.27 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -68.22 367.19 0.97 -67.25 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.31 Total: 23.20 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 6.89 Total: 25.44 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -7.73 Total: -132.18 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.53 Total: -31.28 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.22 0.97 -67.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.999 kcal (2) G-P(sol) polarization free energy of solvation -68.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds