Wall clock time and date at job start Tue Mar 31 2020 14:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47621 * 2 1 4 4 C 1.35346 * 117.00131 * 180.02562 * 3 2 1 5 5 N 1.30556 * 125.44555 * 179.97438 * 4 3 2 6 6 C 1.36332 * 108.38537 * 179.97438 * 5 4 3 7 7 C 1.47367 * 126.41317 * 180.02562 * 6 5 4 8 8 O 1.21621 * 119.99727 * 179.97438 * 7 6 5 9 9 N 1.34775 * 120.00132 * 359.97438 * 7 6 5 10 10 C 1.46497 * 119.99857 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.50043 * 34.93651 * 10 9 7 12 12 C 1.53037 * 109.49854 * 274.83868 * 10 9 7 13 13 C 1.53039 * 109.53833 * 178.68656 * 12 10 9 14 14 C 1.53188 * 109.31572 * 61.36336 * 13 12 10 15 15 N 1.46926 * 108.77514 * 305.36860 * 14 13 12 16 16 C 1.36936 * 120.62854 * 233.62665 * 15 14 13 17 17 H 1.07997 * 119.99857 * 150.14315 * 16 15 14 18 18 C 1.38808 * 120.00124 * 330.14406 * 16 15 14 19 19 N 1.31618 * 120.00016 * 344.50100 * 18 16 15 20 20 Si 1.86800 * 120.00096 * 164.49991 * 18 16 15 21 21 H 1.48500 * 109.47345 * 89.99944 * 20 18 16 22 22 H 1.48504 * 109.47174 * 210.00151 * 20 18 16 23 23 H 1.48498 * 109.47227 * 329.99866 * 20 18 16 24 24 C 1.46927 * 118.73914 * 53.60404 * 15 14 13 25 25 H 1.08996 * 109.58259 * 66.18260 * 24 15 14 26 26 C 1.52998 * 109.58436 * 186.60359 * 24 15 14 27 27 C 1.35915 * 107.16973 * 359.97438 * 6 5 4 28 28 O 1.34202 * 125.45053 * 0.26495 * 4 3 2 29 29 H 1.09001 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46832 * 300.00347 * 1 2 3 31 31 H 1.09003 * 109.46786 * 60.00060 * 1 2 3 32 32 H 1.09006 * 109.47202 * 239.99523 * 2 1 3 33 33 H 1.09003 * 109.46786 * 119.99939 * 2 1 3 34 34 H 0.97003 * 119.99899 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.45926 * 298.70785 * 12 10 9 36 36 H 1.09008 * 109.46174 * 58.66137 * 12 10 9 37 37 H 1.09003 * 109.49771 * 301.41055 * 13 12 10 38 38 H 1.09001 * 109.52390 * 181.33650 * 13 12 10 39 39 H 1.08998 * 109.59153 * 185.57697 * 14 13 12 40 40 H 1.09005 * 109.70167 * 65.22140 * 14 13 12 41 41 H 0.97005 * 120.00215 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.47306 * 179.28953 * 26 24 15 43 43 H 1.08999 * 109.47201 * 299.29191 * 26 24 15 44 44 H 1.09004 * 109.46953 * 59.29169 * 26 24 15 45 45 H 1.08005 * 126.45683 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3483 1.5244 -0.0005 5 7 3.9596 2.6780 -0.0011 6 6 5.3041 2.4522 -0.0009 7 6 6.3632 3.4769 -0.0009 8 8 7.5326 3.1426 -0.0003 9 7 6.0360 4.7843 -0.0015 10 6 7.0890 5.8028 -0.0021 11 1 7.9361 5.4501 -0.5903 12 6 7.5407 6.0712 1.4353 13 6 8.6634 7.1113 1.4331 14 6 8.1388 8.4219 0.8385 15 7 7.5699 8.1453 -0.4876 16 6 7.9861 8.8493 -1.5860 17 1 7.9721 8.3860 -2.5614 18 6 8.4260 10.1583 -1.4456 19 7 8.1658 10.8252 -0.3411 20 14 9.3874 10.9735 -2.8242 21 1 8.4457 11.6518 -3.7506 22 1 10.3239 11.9732 -2.2507 23 1 10.1570 9.9436 -3.5672 24 6 6.5464 7.0987 -0.6129 25 1 5.6450 7.4037 -0.0816 26 6 6.2224 6.8726 -2.0910 27 6 5.4846 1.1051 0.0003 28 8 4.2631 0.5426 -0.0061 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.1033 5.0508 -0.0016 35 1 6.6986 6.4471 2.0164 36 1 7.9044 5.1451 1.8806 37 1 9.4961 6.7465 0.8317 38 1 9.0012 7.2848 2.4549 39 1 8.9585 9.1340 0.7432 40 1 7.3677 8.8372 1.4875 41 1 8.4729 11.7401 -0.2431 42 1 5.4723 6.0871 -2.1826 43 1 5.8366 7.7956 -2.5237 44 1 7.1276 6.5739 -2.6199 45 1 6.4309 0.5844 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993534960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:07 Heat of formation + Delta-G solvation = -26.486842 kcal Electronic energy + Delta-G solvation = -27619.211768 eV Core-core repulsion = 23639.835619 eV Total energy + Delta-G solvation = -3979.376149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.66912 -39.70150 -39.22995 -37.57783 -35.15306 -34.25768 -32.54271 -32.36824 -31.59099 -29.87063 -29.08280 -26.30619 -25.06092 -24.51111 -23.88213 -22.70792 -21.73913 -20.63982 -20.40681 -19.62507 -18.87537 -17.85755 -17.34159 -16.59343 -16.33379 -15.98178 -15.67267 -15.30211 -14.87944 -14.62898 -14.12328 -13.76791 -13.67081 -13.49224 -13.39494 -13.31398 -13.23477 -12.76691 -12.51072 -12.27768 -11.81376 -11.66972 -11.49299 -11.16761 -11.03675 -10.98892 -10.89275 -10.70239 -10.53830 -10.26295 -10.18801 -10.02221 -10.00385 -9.64685 -9.34262 -8.95377 -8.61773 -8.41531 -6.62467 -5.76103 -3.20342 0.94020 1.60406 1.88603 2.43416 3.27747 3.36333 3.39926 3.47098 3.49973 4.27673 4.28630 4.31213 4.53041 4.60329 4.67377 4.87831 5.15408 5.18623 5.26832 5.33667 5.43646 5.48005 5.54432 5.59565 5.67095 5.83825 6.01922 6.13855 6.27184 6.36395 6.38637 6.48789 6.57648 6.65643 6.74862 6.79717 6.88538 7.04305 7.11532 7.27540 7.43573 7.70371 7.79246 7.85567 8.35032 8.49011 9.23859 9.86489 10.43477 11.32764 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.002577 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.311031 B =10864.509886 C =11297.510968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.381 3.619 5 N -0.453 5.453 6 C -0.040 4.040 7 C 0.599 3.401 8 O -0.538 6.538 9 N -0.696 5.696 10 C 0.129 3.871 11 H 0.088 0.912 12 C -0.117 4.117 13 C -0.139 4.139 14 C 0.169 3.831 15 N -0.582 5.582 16 C -0.251 4.251 17 H 0.070 0.930 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.167 3.833 25 H 0.030 0.970 26 C -0.137 4.137 27 C -0.003 4.003 28 O -0.227 6.227 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.406 0.594 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.020 0.980 41 H 0.253 0.747 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.122 -22.480 2.508 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.153 6.153 4 C 0.135 3.865 5 N -0.199 5.199 6 C -0.159 4.159 7 C 0.383 3.617 8 O -0.415 6.415 9 N -0.345 5.345 10 C 0.024 3.976 11 H 0.107 0.893 12 C -0.156 4.156 13 C -0.179 4.179 14 C 0.044 3.956 15 N -0.305 5.305 16 C -0.380 4.380 17 H 0.088 0.912 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.060 3.940 25 H 0.047 0.953 26 C -0.195 4.195 27 C -0.076 4.076 28 O -0.119 6.119 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.242 0.758 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -11.789 -21.836 2.526 24.944 hybrid contribution 0.280 -0.293 -0.569 0.698 sum -11.509 -22.129 1.957 25.020 Atomic orbital electron populations 1.21814 0.91212 1.03627 1.04297 1.23053 0.96876 0.79414 1.03015 1.86390 1.08974 1.30741 1.89226 1.23302 0.83451 0.81619 0.98160 1.71142 1.03990 1.21445 1.23326 1.21863 0.90217 0.94180 1.09676 1.16647 0.86003 0.81964 0.77105 1.90831 1.17865 1.81423 1.51415 1.45989 1.11498 1.04888 1.72113 1.21887 0.90138 0.88225 0.97349 0.89350 1.21771 0.99036 0.98796 0.95989 1.22178 0.97531 0.98320 0.99897 1.20830 0.97737 0.92255 0.84800 1.44035 1.42018 1.39060 1.05388 1.19145 1.37829 0.92698 0.88352 0.91241 1.25087 1.01285 0.95857 0.97262 1.70029 1.47568 1.10105 1.26913 0.86320 0.79875 0.79086 0.81625 1.21428 1.21618 1.20454 1.20562 0.91656 0.87377 0.94440 0.95282 1.21823 1.00390 1.00717 0.96548 1.24962 0.85745 0.92951 1.03895 1.84378 1.16281 1.39199 1.72020 0.89466 0.90915 0.90904 0.90810 0.90826 0.75844 0.92615 0.93120 0.92465 0.92963 0.89480 0.96218 0.93682 0.94156 0.91730 0.92675 0.74791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 10.28 37.16 0.38 -0.19 16 2 C 0.05 0.29 6.38 37.16 0.24 0.52 16 3 O -0.24 -2.41 10.19 -40.96 -0.42 -2.83 16 4 C 0.38 4.45 8.98 52.22 0.47 4.91 16 5 N -0.45 -6.30 11.10 -11.72 -0.13 -6.43 16 6 C -0.04 -0.55 6.99 -82.99 -0.58 -1.13 16 7 C 0.60 9.72 7.78 -12.55 -0.10 9.62 16 8 O -0.54 -9.99 16.55 5.26 0.09 -9.90 16 9 N -0.70 -11.35 4.57 -54.79 -0.25 -11.60 16 10 C 0.13 2.43 1.99 -67.82 -0.14 2.29 16 11 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 12 C -0.12 -2.17 5.46 -26.69 -0.15 -2.31 16 13 C -0.14 -2.78 6.08 -26.61 -0.16 -2.94 16 14 C 0.17 4.04 5.28 -3.71 -0.02 4.02 16 15 N -0.58 -14.37 2.99 -164.78 -0.49 -14.86 16 16 C -0.25 -6.73 8.58 -15.06 -0.13 -6.86 16 17 H 0.07 1.83 6.23 -52.49 -0.33 1.50 16 18 C 0.00 0.10 4.94 -17.43 -0.09 0.02 16 19 N -0.90 -25.98 11.23 55.49 0.62 -25.36 16 20 Si 0.90 21.69 29.58 -169.99 -5.03 16.66 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.17 3.49 3.03 -67.60 -0.21 3.28 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 C -0.14 -2.66 7.84 37.16 0.29 -2.37 16 27 C 0.00 -0.04 11.93 29.90 0.36 0.32 16 28 O -0.23 -2.31 10.20 -17.75 -0.18 -2.49 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.41 6.17 8.33 -40.82 -0.34 5.83 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 2.31 6.15 -51.93 -0.32 1.99 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.04 0.67 7.78 -51.93 -0.40 0.27 16 43 H 0.06 1.32 7.67 -51.93 -0.40 0.92 16 44 H 0.05 1.10 7.40 -51.93 -0.38 0.72 16 45 H 0.24 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -31.93 370.34 -6.81 -38.73 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.77 Total: 3.31 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 0.18 Total: 9.19 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.25 Total: -58.25 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.51 Total: -15.22 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.93 -6.81 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.248 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds