Wall clock time and date at job start Tue Mar 31 2020 14:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47621 * 2 1 4 4 C 1.35346 * 117.00131 * 180.02562 * 3 2 1 5 5 N 1.30556 * 125.44555 * 179.97438 * 4 3 2 6 6 C 1.36332 * 108.38537 * 179.97438 * 5 4 3 7 7 C 1.47367 * 126.41317 * 180.02562 * 6 5 4 8 8 O 1.21621 * 119.99727 * 179.97438 * 7 6 5 9 9 N 1.34775 * 120.00132 * 359.97438 * 7 6 5 10 10 C 1.46497 * 119.99857 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.50043 * 34.93651 * 10 9 7 12 12 C 1.53037 * 109.49854 * 274.83868 * 10 9 7 13 13 C 1.53039 * 109.53833 * 178.68656 * 12 10 9 14 14 C 1.53188 * 109.31572 * 61.36336 * 13 12 10 15 15 N 1.46926 * 108.77514 * 305.36860 * 14 13 12 16 16 C 1.36936 * 120.62854 * 233.62665 * 15 14 13 17 17 H 1.07997 * 119.99857 * 150.14315 * 16 15 14 18 18 C 1.38808 * 120.00124 * 330.14406 * 16 15 14 19 19 N 1.31618 * 120.00016 * 344.50100 * 18 16 15 20 20 Si 1.86800 * 120.00096 * 164.49991 * 18 16 15 21 21 H 1.48500 * 109.47345 * 89.99944 * 20 18 16 22 22 H 1.48504 * 109.47174 * 210.00151 * 20 18 16 23 23 H 1.48498 * 109.47227 * 329.99866 * 20 18 16 24 24 C 1.46927 * 118.73914 * 53.60404 * 15 14 13 25 25 H 1.08996 * 109.58259 * 66.18260 * 24 15 14 26 26 C 1.52998 * 109.58436 * 186.60359 * 24 15 14 27 27 C 1.35915 * 107.16973 * 359.97438 * 6 5 4 28 28 O 1.34202 * 125.45053 * 0.26495 * 4 3 2 29 29 H 1.09001 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46832 * 300.00347 * 1 2 3 31 31 H 1.09003 * 109.46786 * 60.00060 * 1 2 3 32 32 H 1.09006 * 109.47202 * 239.99523 * 2 1 3 33 33 H 1.09003 * 109.46786 * 119.99939 * 2 1 3 34 34 H 0.97003 * 119.99899 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.45926 * 298.70785 * 12 10 9 36 36 H 1.09008 * 109.46174 * 58.66137 * 12 10 9 37 37 H 1.09003 * 109.49771 * 301.41055 * 13 12 10 38 38 H 1.09001 * 109.52390 * 181.33650 * 13 12 10 39 39 H 1.08998 * 109.59153 * 185.57697 * 14 13 12 40 40 H 1.09005 * 109.70167 * 65.22140 * 14 13 12 41 41 H 0.97005 * 120.00215 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.47306 * 179.28953 * 26 24 15 43 43 H 1.08999 * 109.47201 * 299.29191 * 26 24 15 44 44 H 1.09004 * 109.46953 * 59.29169 * 26 24 15 45 45 H 1.08005 * 126.45683 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3483 1.5244 -0.0005 5 7 3.9596 2.6780 -0.0011 6 6 5.3041 2.4522 -0.0009 7 6 6.3632 3.4769 -0.0009 8 8 7.5326 3.1426 -0.0003 9 7 6.0360 4.7843 -0.0015 10 6 7.0890 5.8028 -0.0021 11 1 7.9361 5.4501 -0.5903 12 6 7.5407 6.0712 1.4353 13 6 8.6634 7.1113 1.4331 14 6 8.1388 8.4219 0.8385 15 7 7.5699 8.1453 -0.4876 16 6 7.9861 8.8493 -1.5860 17 1 7.9721 8.3860 -2.5614 18 6 8.4260 10.1583 -1.4456 19 7 8.1658 10.8252 -0.3411 20 14 9.3874 10.9735 -2.8242 21 1 8.4457 11.6518 -3.7506 22 1 10.3239 11.9732 -2.2507 23 1 10.1570 9.9436 -3.5672 24 6 6.5464 7.0987 -0.6129 25 1 5.6450 7.4037 -0.0816 26 6 6.2224 6.8726 -2.0910 27 6 5.4846 1.1051 0.0003 28 8 4.2631 0.5426 -0.0061 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.1033 5.0508 -0.0016 35 1 6.6986 6.4471 2.0164 36 1 7.9044 5.1451 1.8806 37 1 9.4961 6.7465 0.8317 38 1 9.0012 7.2848 2.4549 39 1 8.9585 9.1340 0.7432 40 1 7.3677 8.8372 1.4875 41 1 8.4729 11.7401 -0.2431 42 1 5.4723 6.0871 -2.1826 43 1 5.8366 7.7956 -2.5237 44 1 7.1276 6.5739 -2.6199 45 1 6.4309 0.5844 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993534960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:06 Heat of formation + Delta-G solvation = -50.708224 kcal Electronic energy + Delta-G solvation = -27620.262086 eV Core-core repulsion = 23639.835619 eV Total energy + Delta-G solvation = -3980.426467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.54708 -41.03544 -39.97370 -39.17985 -36.12002 -35.86853 -34.22084 -33.39957 -32.85931 -31.14471 -30.43070 -27.95891 -26.90724 -25.61693 -24.55451 -23.81061 -23.01506 -22.31331 -21.56420 -21.12780 -20.02726 -18.64436 -18.51935 -18.12864 -17.42030 -17.28824 -16.68967 -16.58543 -16.08320 -15.95692 -15.63531 -15.54786 -15.14906 -14.84524 -14.56849 -14.45874 -14.26069 -13.91568 -13.55881 -13.34256 -13.25087 -12.79545 -12.73521 -12.66306 -12.54455 -12.50347 -12.38301 -12.02074 -11.92771 -11.82295 -11.80364 -11.74338 -11.65911 -11.32441 -11.08744 -10.51548 -10.10492 -9.74096 -8.63552 -7.84260 -5.30653 0.02589 0.83751 0.91204 1.47694 1.49761 1.58757 1.65721 2.06241 2.19760 2.54721 3.30311 3.31522 3.64825 3.73606 3.88842 3.93984 3.96805 4.02103 4.10316 4.22465 4.27703 4.36910 4.39200 4.51967 4.62320 4.65154 4.76564 4.85318 4.87938 4.90172 4.92004 5.04987 5.15005 5.19651 5.20943 5.27717 5.42549 5.46776 5.58412 5.64517 5.72344 5.77816 6.30990 6.43498 6.59262 7.08705 7.18231 7.87289 8.39931 9.23002 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.002577 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.311031 B =10864.509886 C =11297.510968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.257 6.257 4 C 0.385 3.615 5 N -0.483 5.483 6 C -0.074 4.074 7 C 0.603 3.397 8 O -0.564 6.564 9 N -0.693 5.693 10 C 0.146 3.854 11 H 0.068 0.932 12 C -0.110 4.110 13 C -0.128 4.128 14 C 0.175 3.825 15 N -0.599 5.599 16 C -0.253 4.253 17 H 0.072 0.928 18 C -0.049 4.049 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.272 1.272 24 C 0.164 3.836 25 H 0.028 0.972 26 C -0.127 4.127 27 C 0.031 3.969 28 O -0.214 6.214 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.002 0.998 41 H 0.249 0.751 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.045 0.955 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.924 -25.214 2.299 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.166 6.166 4 C 0.138 3.862 5 N -0.230 5.230 6 C -0.192 4.192 7 C 0.389 3.611 8 O -0.444 6.444 9 N -0.342 5.342 10 C 0.040 3.960 11 H 0.086 0.914 12 C -0.149 4.149 13 C -0.167 4.167 14 C 0.050 3.950 15 N -0.323 5.323 16 C -0.383 4.383 17 H 0.090 0.910 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.791 3.209 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.198 1.198 24 C 0.057 3.943 25 H 0.046 0.954 26 C -0.185 4.185 27 C -0.042 4.042 28 O -0.105 6.105 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.249 0.751 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -12.632 -24.610 2.310 27.759 hybrid contribution 0.414 0.421 -0.493 0.769 sum -12.219 -24.189 1.817 27.161 Atomic orbital electron populations 1.21866 0.89880 1.05072 1.03825 1.23445 0.97890 0.77746 1.04188 1.86424 1.07877 1.33334 1.88923 1.23308 0.84183 0.81408 0.97254 1.71026 1.04276 1.22904 1.24774 1.21487 0.89805 0.94611 1.13284 1.16866 0.86264 0.81990 0.75944 1.90812 1.19141 1.81802 1.52660 1.45813 1.11116 1.04770 1.72534 1.21418 0.89947 0.87624 0.96995 0.91376 1.21699 0.98645 0.98617 0.95903 1.22008 0.97623 0.96446 1.00650 1.20649 0.96149 0.93588 0.84664 1.44271 1.43223 1.39708 1.05097 1.19429 1.36971 0.92830 0.89097 0.91034 1.25797 1.02654 0.96598 0.99427 1.70174 1.48975 1.10105 1.28710 0.85353 0.78453 0.78008 0.79093 1.21149 1.22027 1.19750 1.20687 0.90697 0.87256 0.95620 0.95439 1.21717 1.00639 1.00857 0.95255 1.25568 0.86641 0.92008 0.99997 1.84429 1.15976 1.38539 1.71573 0.86999 0.91357 0.91404 0.89663 0.89607 0.75098 0.91970 0.92084 0.93208 0.90705 0.92604 0.97972 0.94214 0.91386 0.93182 0.93566 0.71645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 71.98 0.74 -0.06 16 2 C 0.04 0.37 6.38 71.98 0.46 0.82 16 3 O -0.26 -4.62 10.19 -64.14 -0.65 -5.28 16 4 C 0.39 8.24 8.98 130.43 1.17 9.42 16 5 N -0.48 -12.75 11.10 -419.39 -4.65 -17.41 16 6 C -0.07 -1.90 6.99 40.31 0.28 -1.62 16 7 C 0.60 18.80 7.78 86.65 0.67 19.48 16 8 O -0.56 -20.26 16.55 -4.10 -0.07 -20.32 16 9 N -0.69 -21.93 4.57 -445.50 -2.04 -23.97 16 10 C 0.15 5.42 1.99 45.07 0.09 5.51 16 11 H 0.07 2.85 7.58 -2.39 -0.02 2.83 16 12 C -0.11 -3.96 5.46 30.62 0.17 -3.79 16 13 C -0.13 -5.04 6.08 30.67 0.19 -4.86 16 14 C 0.17 8.55 5.28 86.36 0.46 9.01 16 15 N -0.60 -30.09 2.99 -675.26 -2.02 -32.10 16 16 C -0.25 -13.79 8.58 84.03 0.72 -13.07 16 17 H 0.07 3.80 6.23 -2.91 -0.02 3.78 16 18 C -0.05 -2.76 4.94 84.86 0.42 -2.34 16 19 N -0.93 -55.25 11.23 21.65 0.24 -55.00 16 20 Si 0.96 45.28 29.58 68.60 2.03 47.31 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 24 C 0.16 6.84 3.03 44.97 0.14 6.97 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 C -0.13 -4.89 7.84 71.98 0.56 -4.32 16 27 C 0.03 0.56 11.93 67.28 0.80 1.36 16 28 O -0.21 -3.73 10.20 18.92 0.19 -3.54 16 29 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.41 12.13 8.33 -92.71 -0.77 11.36 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.06 3.07 6.15 -2.39 -0.01 3.05 16 40 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 41 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 42 H 0.07 2.20 7.78 -2.39 -0.02 2.18 16 43 H 0.05 2.04 7.67 -2.39 -0.02 2.03 16 44 H 0.05 1.84 7.40 -2.38 -0.02 1.82 16 45 H 0.27 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -69.73 370.34 0.14 -69.59 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.24 Total: 18.21 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 6.87 Total: 22.51 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -8.46 Total: -128.48 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.53 Total: -29.14 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.73 0.14 -69.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.882 kcal (2) G-P(sol) polarization free energy of solvation -69.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds