Wall clock time and date at job start Tue Mar 31 2020 14:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47043 * 2 1 4 4 C 1.35729 * 116.99956 * 180.02562 * 3 2 1 5 5 C 1.41861 * 126.78571 * 180.23537 * 4 3 2 6 6 C 1.36665 * 103.81045 * 180.11997 * 5 4 3 7 7 C 1.47547 * 126.87788 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99902 * 359.70849 * 7 6 5 9 9 N 1.34777 * 119.99776 * 179.71111 * 7 6 5 10 10 C 1.46499 * 119.99779 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.52540 * 35.07851 * 10 9 7 12 12 C 1.53040 * 109.49507 * 274.99429 * 10 9 7 13 13 C 1.53043 * 109.54140 * 301.41742 * 12 10 9 14 14 C 1.53193 * 109.30963 * 298.63474 * 13 12 10 15 15 N 1.46924 * 108.77570 * 54.63298 * 14 13 12 16 16 C 1.36942 * 120.62759 * 126.37031 * 15 14 13 17 17 H 1.07996 * 119.99319 * 209.85757 * 16 15 14 18 18 C 1.38810 * 120.00133 * 29.85789 * 16 15 14 19 19 N 1.31624 * 120.00100 * 15.53431 * 18 16 15 20 20 Si 1.86793 * 119.99873 * 195.53048 * 18 16 15 21 21 H 1.48502 * 109.47168 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47257 * 299.99868 * 20 18 16 23 23 H 1.48501 * 109.47449 * 60.00426 * 20 18 16 24 24 C 1.46923 * 118.74187 * 306.64404 * 15 14 13 25 25 H 1.09004 * 109.58631 * 293.57127 * 24 15 14 26 26 C 1.52996 * 109.58910 * 173.14615 * 24 15 14 27 27 O 1.34659 * 106.24237 * 359.67059 * 6 5 4 28 28 N 1.20880 * 111.63287 * 0.22042 * 27 6 5 29 29 H 1.09002 * 109.46889 * 60.00117 * 1 2 3 30 30 H 1.08996 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47233 * 300.00095 * 1 2 3 32 32 H 1.08997 * 109.47233 * 239.99905 * 2 1 3 33 33 H 1.08993 * 109.47080 * 119.99808 * 2 1 3 34 34 H 1.07996 * 128.09249 * 0.02600 * 5 4 3 35 35 H 0.97006 * 120.00020 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.46284 * 181.38935 * 12 10 9 37 37 H 1.09005 * 109.44845 * 61.43195 * 12 10 9 38 38 H 1.08996 * 109.49796 * 178.68040 * 13 12 10 39 39 H 1.09000 * 109.52406 * 58.60257 * 13 12 10 40 40 H 1.08998 * 109.58588 * 294.84653 * 14 13 12 41 41 H 1.08997 * 109.70252 * 174.49039 * 14 13 12 42 42 H 0.96997 * 120.00116 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.47177 * 59.99973 * 26 24 15 44 44 H 1.08998 * 109.46969 * 180.02562 * 26 24 15 45 45 H 1.08997 * 109.47304 * 299.99802 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0452 2.7628 0.0040 6 6 5.3625 2.3988 -0.0016 7 6 6.5303 3.3006 -0.0006 8 8 6.3679 4.5055 0.0003 9 7 7.7770 2.7886 -0.0008 10 6 8.9365 3.6840 0.0007 11 1 8.7108 4.5713 0.5921 12 6 9.2645 4.0973 -1.4359 13 6 9.5495 2.8497 -2.2751 14 6 10.7619 2.1148 -1.6947 15 7 10.5131 1.8417 -0.2727 16 6 10.6245 0.5701 0.2234 17 1 10.0199 0.2637 1.0641 18 6 11.5146 -0.3247 -0.3543 19 7 12.4585 0.1135 -1.1602 20 14 11.3728 -2.1509 0.0120 21 1 12.4336 -2.8868 -0.7218 22 1 11.5329 -2.3770 1.4709 23 1 10.0396 -2.6408 -0.4215 24 6 10.1365 2.9576 0.6057 25 1 10.9729 3.6509 0.6947 26 6 9.7638 2.4188 1.9883 27 8 5.3812 1.0523 -0.0012 28 7 4.2639 0.5911 -0.0006 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 3.6293 3.7594 0.0090 35 1 7.9066 1.8272 -0.0012 36 1 10.1422 4.7437 -1.4364 37 1 8.4172 4.6353 -1.8612 38 1 9.7600 3.1433 -3.3035 39 1 8.6811 2.1912 -2.2553 40 1 11.6503 2.7379 -1.7971 41 1 10.9113 1.1752 -2.2266 42 1 13.0803 -0.5119 -1.5641 43 1 10.6177 1.8935 2.4159 44 1 9.4843 3.2481 2.6381 45 1 8.9232 1.7311 1.8958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993622998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:57 Heat of formation + Delta-G solvation = 13.409434 kcal Electronic energy + Delta-G solvation = -28367.300647 eV Core-core repulsion = 24389.654530 eV Total energy + Delta-G solvation = -3977.646117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.02593 -39.87995 -39.18534 -37.73397 -34.17537 -33.57333 -32.64900 -32.10260 -31.62290 -31.27044 -29.42936 -26.42706 -25.11042 -24.68421 -23.53627 -23.23934 -21.88509 -20.94628 -20.66276 -19.00702 -18.83867 -18.02285 -17.02920 -16.51160 -16.17803 -16.05132 -15.58666 -15.04377 -14.86684 -14.71816 -14.15245 -13.91951 -13.65532 -13.50655 -13.36073 -13.15921 -13.08374 -13.00272 -12.61588 -12.19001 -11.90956 -11.44665 -11.43820 -11.33424 -11.29361 -10.98639 -10.73445 -10.67359 -10.56945 -10.19835 -10.10627 -10.04591 -9.92516 -9.72299 -9.45997 -9.36143 -8.72609 -8.49788 -6.70930 -5.83544 -3.29325 0.74699 2.00019 2.41656 2.63546 3.09659 3.36080 3.42301 3.43711 3.51470 3.98653 4.44251 4.54670 4.57282 4.69261 4.90862 4.94430 5.08346 5.24910 5.28752 5.30997 5.40363 5.48294 5.53243 5.56800 5.65033 5.67075 5.89427 6.05389 6.16452 6.23052 6.35460 6.46700 6.54683 6.62393 6.72262 6.76426 6.85177 6.89329 6.99814 7.34315 7.62506 7.63649 7.76814 8.00711 8.22578 8.39880 9.15646 9.78299 10.34821 11.24605 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.003746 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.770157 B = 7473.666110 C = 8872.218930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.203 3.797 5 C -0.163 4.163 6 C -0.047 4.047 7 C 0.597 3.403 8 O -0.524 6.524 9 N -0.679 5.679 10 C 0.132 3.868 11 H 0.082 0.918 12 C -0.122 4.122 13 C -0.142 4.142 14 C 0.171 3.829 15 N -0.586 5.586 16 C -0.259 4.259 17 H 0.071 0.929 18 C 0.009 3.991 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.292 1.292 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.159 3.841 25 H 0.043 0.957 26 C -0.138 4.138 27 O 0.123 5.877 28 N -0.390 5.390 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.188 0.812 35 H 0.417 0.583 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.768 3.475 1.610 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.006 3.994 5 C -0.186 4.186 6 C -0.114 4.114 7 C 0.379 3.621 8 O -0.401 6.401 9 N -0.330 5.330 10 C 0.026 3.974 11 H 0.100 0.900 12 C -0.160 4.160 13 C -0.182 4.182 14 C 0.045 3.955 15 N -0.309 5.309 16 C -0.388 4.388 17 H 0.088 0.912 18 C -0.191 4.191 19 N -0.543 5.543 20 Si 0.729 3.271 21 H -0.217 1.217 22 H -0.209 1.209 23 H -0.209 1.209 24 C 0.052 3.948 25 H 0.061 0.939 26 C -0.196 4.196 27 O 0.056 5.944 28 N -0.114 5.114 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.205 0.795 35 H 0.255 0.745 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.983 3.084 1.537 17.329 hybrid contribution -0.158 -0.910 0.034 0.925 sum -17.141 2.174 1.571 17.349 Atomic orbital electron populations 1.21793 0.92181 1.03204 1.03629 1.22838 0.95848 0.80585 1.02594 1.86199 1.13064 1.30244 1.89436 1.21839 0.85799 0.90549 1.01209 1.22119 0.90104 0.99104 1.07291 1.24285 0.96784 0.84313 1.05984 1.16530 0.81346 0.85982 0.78260 1.90838 1.84997 1.12777 1.51504 1.46011 1.04184 1.12343 1.70426 1.21672 0.85695 0.92670 0.97335 0.89955 1.21790 1.00743 0.98258 0.95240 1.22163 1.01522 0.96730 0.97742 1.20803 0.91283 0.99069 0.84315 1.44149 1.80649 1.03019 1.03120 1.19103 1.16902 0.86946 1.15871 0.91166 1.25088 0.95197 0.98639 1.00152 1.70012 1.16662 1.33383 1.34242 0.86429 0.77296 0.85486 0.77897 1.21745 1.20882 1.20864 1.20642 0.92458 0.91180 0.90568 0.93918 1.21811 1.02020 0.99937 0.95798 1.85019 1.22629 1.18649 1.68065 1.74031 0.90458 1.22196 1.24682 0.91352 0.89954 0.91364 0.91474 0.91486 0.79466 0.74537 0.91480 0.92912 0.93262 0.92804 0.96269 0.89559 0.93566 0.91545 0.94073 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.53 6.38 37.16 0.24 0.77 16 3 O -0.28 -3.42 10.21 -18.89 -0.19 -3.61 16 4 C 0.20 2.76 8.00 -16.72 -0.13 2.63 16 5 C -0.16 -2.14 10.97 -38.77 -0.43 -2.56 16 6 C -0.05 -0.68 7.29 -36.36 -0.26 -0.94 16 7 C 0.60 9.37 7.78 -12.46 -0.10 9.27 16 8 O -0.52 -9.19 16.58 5.30 0.09 -9.11 16 9 N -0.68 -10.88 3.44 -54.95 -0.19 -11.07 16 10 C 0.13 2.18 2.32 -68.03 -0.16 2.02 16 11 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 12 C -0.12 -2.01 5.58 -26.69 -0.15 -2.16 16 13 C -0.14 -2.58 5.93 -26.61 -0.16 -2.73 16 14 C 0.17 3.76 5.29 -3.71 -0.02 3.74 16 15 N -0.59 -12.99 2.65 -165.03 -0.44 -13.42 16 16 C -0.26 -6.36 8.57 -15.06 -0.13 -6.49 16 17 H 0.07 1.67 6.23 -52.49 -0.33 1.35 16 18 C 0.01 0.23 4.94 -17.43 -0.09 0.14 16 19 N -0.90 -24.75 11.23 55.49 0.62 -24.13 16 20 Si 0.90 20.73 29.58 -169.99 -5.03 15.70 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.16 2.96 3.18 -67.83 -0.22 2.75 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 C -0.14 -2.38 7.72 37.16 0.29 -2.09 16 27 O 0.12 1.84 11.03 15.50 0.17 2.02 16 28 N -0.39 -5.77 11.50 30.47 0.35 -5.42 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.19 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.42 7.00 7.56 -40.82 -0.31 6.70 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 2.16 6.14 -51.93 -0.32 1.84 16 42 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.07 1.24 7.62 -51.93 -0.40 0.85 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.93 6.36 -51.93 -0.33 0.60 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -28.16 366.72 -6.69 -34.86 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.67 Total: 4.93 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.93 Total: 3.74 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.35 Total: -54.04 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.16 -6.69 -34.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993622998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.265 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds