Wall clock time and date at job start Tue Mar 31 2020 14:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42899 * 109.47314 * 2 1 4 4 C 1.35727 * 117.00046 * 179.97438 * 3 2 1 5 5 C 1.41859 * 126.78830 * 179.71166 * 4 3 2 6 6 C 1.36661 * 103.81082 * 179.85555 * 5 4 3 7 7 C 1.47549 * 126.87486 * 180.12612 * 6 5 4 8 8 O 1.21577 * 120.00290 * 0.35444 * 7 6 5 9 9 N 1.34782 * 119.99515 * 180.35143 * 7 6 5 10 10 C 1.46501 * 119.99426 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.49759 * 34.93785 * 10 9 7 12 12 C 1.53042 * 109.49704 * 274.83781 * 10 9 7 13 13 C 1.53047 * 109.53680 * 178.68549 * 12 10 9 14 14 C 1.53195 * 109.30982 * 61.36434 * 13 12 10 15 15 N 1.46917 * 108.77914 * 305.36573 * 14 13 12 16 16 C 1.36935 * 120.63229 * 233.63213 * 15 14 13 17 17 H 1.07998 * 120.00366 * 150.14013 * 16 15 14 18 18 C 1.38813 * 120.00061 * 330.13614 * 16 15 14 19 19 N 1.31614 * 119.99864 * 344.51426 * 18 16 15 20 20 Si 1.86805 * 120.00010 * 164.50675 * 18 16 15 21 21 H 1.48503 * 109.46826 * 60.00418 * 20 18 16 22 22 H 1.48501 * 109.46796 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47201 * 300.00190 * 20 18 16 24 24 C 1.46925 * 118.73915 * 53.60779 * 15 14 13 25 25 H 1.08996 * 109.70650 * 66.25001 * 24 15 14 26 26 C 1.52999 * 109.58942 * 186.60314 * 24 15 14 27 27 O 1.34660 * 106.24302 * 0.40480 * 6 5 4 28 28 N 1.20869 * 111.63366 * 359.72148 * 27 6 5 29 29 H 1.09008 * 109.47358 * 60.00087 * 1 2 3 30 30 H 1.09003 * 109.47494 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47449 * 299.99771 * 1 2 3 32 32 H 1.09008 * 109.47141 * 239.99822 * 2 1 3 33 33 H 1.09001 * 109.47503 * 120.00325 * 2 1 3 34 34 H 1.07993 * 128.08955 * 0.02562 * 5 4 3 35 35 H 0.96992 * 120.00051 * 0.02562 * 9 7 6 36 36 H 1.08993 * 109.46430 * 298.70217 * 12 10 9 37 37 H 1.08996 * 109.45932 * 58.66792 * 12 10 9 38 38 H 1.09001 * 109.49537 * 301.42123 * 13 12 10 39 39 H 1.08998 * 109.52528 * 181.33187 * 13 12 10 40 40 H 1.08998 * 109.58389 * 185.57835 * 14 13 12 41 41 H 1.08995 * 109.58491 * 65.15475 * 14 13 12 42 42 H 0.96997 * 120.00113 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.47235 * 179.28858 * 26 24 15 44 44 H 1.09002 * 109.47526 * 299.29215 * 26 24 15 45 45 H 1.09003 * 109.46939 * 59.28937 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3519 1.5250 0.0005 5 6 4.0453 2.7626 -0.0051 6 6 5.3625 2.3986 0.0016 7 6 6.5303 3.3004 0.0023 8 8 6.3680 4.5053 0.0030 9 7 7.7771 2.7883 0.0021 10 6 8.9366 3.6837 0.0022 11 1 8.7098 4.5726 0.5908 12 6 9.2664 4.0925 -1.4353 13 6 10.4573 5.0539 -1.4335 14 6 11.6791 4.3458 -0.8397 15 7 11.3242 3.8224 0.4864 16 6 12.0813 4.1326 1.5845 17 1 11.6214 4.1852 2.5602 18 6 13.4400 4.3795 1.4435 19 7 14.0618 4.0264 0.3385 20 14 14.3859 5.2130 2.8219 21 1 14.2972 4.3872 4.0529 22 1 15.8098 5.3601 2.4267 23 1 13.8028 6.5537 3.0821 24 6 10.1412 2.9602 0.6122 25 1 10.3114 2.0231 0.0822 26 6 9.8716 2.6716 2.0904 27 8 5.3811 1.0521 0.0011 28 7 4.2639 0.5910 0.0006 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.6294 3.7592 -0.0103 35 1 7.9065 1.8271 0.0011 36 1 9.5169 3.2053 -2.0167 37 1 8.4022 4.5858 -1.8799 38 1 10.2165 5.9302 -0.8316 39 1 10.6771 5.3634 -2.4553 40 1 12.5017 5.0546 -0.7446 41 1 11.9763 3.5230 -1.4897 42 1 15.0112 4.1992 0.2398 43 1 8.9863 2.0423 2.1822 44 1 10.7297 2.1569 2.5226 45 1 9.7067 3.6102 2.6196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993623020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:06 Heat of formation + Delta-G solvation = -8.193229 kcal Electronic energy + Delta-G solvation = -27568.888865 eV Core-core repulsion = 23590.305986 eV Total energy + Delta-G solvation = -3978.582879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.13035 -41.16122 -40.09806 -39.26268 -36.04420 -34.61535 -34.32835 -33.51224 -32.99304 -32.14494 -30.88873 -27.95825 -26.89083 -25.78163 -24.56585 -24.33998 -23.17791 -22.31161 -21.75918 -21.19988 -20.03067 -19.11904 -18.23983 -18.03887 -17.43049 -17.15613 -17.00983 -16.75415 -16.06878 -15.80636 -15.57099 -15.50833 -15.18795 -14.88843 -14.71015 -14.48713 -14.26368 -14.08061 -13.54382 -13.31683 -13.24946 -12.96956 -12.76416 -12.69424 -12.51980 -12.39321 -12.35042 -12.13459 -12.00422 -11.84095 -11.76368 -11.66318 -11.40323 -11.11960 -11.02627 -10.49060 -10.46027 -10.13460 -8.61558 -7.82714 -5.28734 -0.40158 0.93403 1.38731 1.48758 1.50152 1.52265 1.57916 1.84064 2.21516 2.56297 2.94030 3.33174 3.56650 3.63380 3.77255 3.91684 3.93010 3.93691 4.04633 4.08942 4.24462 4.27449 4.40497 4.53193 4.55497 4.65576 4.79252 4.79514 4.86057 4.91442 4.95754 5.07661 5.15882 5.16589 5.18243 5.28789 5.44027 5.50265 5.61114 5.74677 5.80582 5.86005 6.26440 6.45259 6.85550 6.94043 7.20075 7.89976 8.41297 9.24077 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.002422 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.429594 B =11558.476278 C =11902.512388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.289 6.289 4 C 0.204 3.796 5 C -0.152 4.152 6 C -0.053 4.053 7 C 0.610 3.390 8 O -0.540 6.540 9 N -0.688 5.688 10 C 0.145 3.855 11 H 0.071 0.929 12 C -0.112 4.112 13 C -0.129 4.129 14 C 0.174 3.826 15 N -0.599 5.599 16 C -0.252 4.252 17 H 0.073 0.927 18 C -0.049 4.049 19 N -0.933 5.933 20 Si 0.960 3.040 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.281 1.281 24 C 0.163 3.837 25 H 0.036 0.964 26 C -0.131 4.131 27 O 0.120 5.880 28 N -0.398 5.398 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.203 0.797 35 H 0.418 0.582 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.004 0.996 42 H 0.248 0.752 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.649 -7.783 -2.357 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.196 6.196 4 C 0.007 3.993 5 C -0.175 4.175 6 C -0.119 4.119 7 C 0.393 3.607 8 O -0.418 6.418 9 N -0.339 5.339 10 C 0.039 3.961 11 H 0.090 0.910 12 C -0.151 4.151 13 C -0.169 4.169 14 C 0.049 3.951 15 N -0.323 5.323 16 C -0.382 4.382 17 H 0.091 0.909 18 C -0.244 4.244 19 N -0.579 5.579 20 Si 0.789 3.211 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.208 1.208 24 C 0.056 3.944 25 H 0.054 0.946 26 C -0.188 4.188 27 O 0.054 5.946 28 N -0.123 5.123 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.220 0.780 35 H 0.255 0.745 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.022 0.978 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.869 -8.052 -2.369 25.302 hybrid contribution 0.928 0.619 0.517 1.230 sum -22.940 -7.433 -1.852 24.185 Atomic orbital electron populations 1.21829 0.90078 1.04675 1.03779 1.23120 0.97542 0.79279 1.02595 1.86238 1.12229 1.32043 1.89057 1.21958 0.86380 0.90401 1.00558 1.22405 0.89850 0.99904 1.05313 1.23829 0.96217 0.84293 1.07605 1.16506 0.81336 0.85779 0.77070 1.90882 1.85228 1.14205 1.51465 1.45841 1.04261 1.11702 1.72048 1.21511 0.84252 0.93075 0.97217 0.91037 1.21721 0.97835 0.99676 0.95823 1.22017 0.96020 0.98231 1.00599 1.20653 0.94398 0.95366 0.84726 1.44247 1.27922 1.55089 1.04993 1.19394 0.89043 1.40613 0.89169 0.90938 1.25765 0.97409 1.01952 0.99299 1.70154 1.08915 1.50125 1.28658 0.85459 0.77173 0.78953 0.79556 1.20128 1.22362 1.20774 1.20726 0.85889 0.91996 0.95765 0.94634 1.21766 1.00942 1.00974 0.95163 1.84951 1.22760 1.18351 1.68534 1.73983 0.90635 1.22380 1.25293 0.91220 0.87794 0.91251 0.91388 0.91429 0.77962 0.74473 0.91350 0.91908 0.93357 0.90824 0.92847 0.97751 0.94285 0.90700 0.93294 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 71.98 0.74 -0.48 16 2 C 0.05 0.68 6.38 71.98 0.46 1.14 16 3 O -0.29 -5.62 10.21 -90.50 -0.92 -6.54 16 4 C 0.20 4.42 8.00 85.78 0.69 5.11 16 5 C -0.15 -3.20 10.97 22.80 0.25 -2.95 16 6 C -0.05 -1.20 7.29 24.36 0.18 -1.02 16 7 C 0.61 16.14 7.79 86.70 0.68 16.82 16 8 O -0.54 -17.83 16.57 -3.96 -0.07 -17.89 16 9 N -0.69 -17.41 4.57 -445.32 -2.04 -19.45 16 10 C 0.15 4.71 2.00 45.07 0.09 4.80 16 11 H 0.07 2.68 7.57 -2.39 -0.02 2.66 16 12 C -0.11 -3.58 5.46 30.62 0.17 -3.42 16 13 C -0.13 -4.75 6.08 30.68 0.19 -4.57 16 14 C 0.17 8.06 5.28 86.37 0.46 8.52 16 15 N -0.60 -28.27 2.99 -675.26 -2.02 -30.28 16 16 C -0.25 -13.14 8.58 84.03 0.72 -12.42 16 17 H 0.07 3.67 6.23 -2.91 -0.02 3.66 16 18 C -0.05 -2.65 4.94 84.86 0.42 -2.23 16 19 N -0.93 -53.70 11.23 21.65 0.24 -53.46 16 20 Si 0.96 44.17 29.58 68.60 2.03 46.20 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 C 0.16 6.08 3.03 44.98 0.14 6.22 16 25 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 26 C -0.13 -4.48 7.84 71.98 0.56 -3.92 16 27 O 0.12 2.63 11.03 65.67 0.72 3.35 16 28 N -0.40 -9.03 11.50 -172.00 -1.98 -11.01 16 29 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.42 8.50 8.43 -92.71 -0.78 7.72 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.05 2.83 6.15 -2.39 -0.01 2.82 16 41 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.07 2.00 7.79 -2.38 -0.02 1.98 16 44 H 0.05 1.83 7.67 -2.39 -0.02 1.81 16 45 H 0.04 1.63 7.40 -2.39 -0.02 1.61 16 Total: -1.00 -64.09 370.07 1.93 -62.16 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.23 Total: 15.34 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.73 Total: 11.59 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -5.79 Total: -114.20 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.27 Total: -21.09 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -64.09 1.93 -62.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993623020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.963 kcal (2) G-P(sol) polarization free energy of solvation -64.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds