Wall clock time and date at job start Tue Mar 31 2020 14:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00248 * 2 1 4 4 C 1.50701 * 109.47355 * 179.97438 * 3 2 1 5 5 C 1.35315 * 126.66263 * 90.32096 * 4 3 2 6 6 C 1.42269 * 103.92250 * 180.08345 * 5 4 3 7 7 C 1.48330 * 126.93976 * 179.88963 * 6 5 4 8 8 O 1.21491 * 119.99996 * 359.70553 * 7 6 5 9 9 N 1.34783 * 120.00108 * 179.71167 * 7 6 5 10 10 C 1.46491 * 120.00019 * 179.97438 * 9 7 6 11 11 H 1.09011 * 109.52705 * 35.07925 * 10 9 7 12 12 C 1.53041 * 109.49838 * 275.00037 * 10 9 7 13 13 C 1.53042 * 109.53755 * 178.68274 * 12 10 9 14 14 C 1.53197 * 109.31056 * 61.36512 * 13 12 10 15 15 N 1.46924 * 108.77415 * 305.36136 * 14 13 12 16 16 C 1.36943 * 120.62995 * 233.58592 * 15 14 13 17 17 H 1.07999 * 119.99741 * 150.98933 * 16 15 14 18 18 C 1.38811 * 119.99970 * 330.98603 * 16 15 14 19 19 N 1.31620 * 120.00262 * 344.98836 * 18 16 15 20 20 Si 1.86799 * 119.99624 * 164.98484 * 18 16 15 21 21 H 1.48499 * 109.46917 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.47363 * 300.00138 * 20 18 16 23 23 H 1.48504 * 109.47236 * 60.00138 * 20 18 16 24 24 C 1.46929 * 118.73776 * 53.86514 * 15 14 13 25 25 H 1.09001 * 109.58656 * 65.92557 * 24 15 14 26 26 C 1.53003 * 109.58379 * 186.34982 * 24 15 14 27 27 N 1.30986 * 106.12188 * 359.62600 * 6 5 4 28 28 O 1.20901 * 111.44108 * 0.24463 * 27 6 5 29 29 H 1.08994 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47014 * 300.00157 * 1 2 3 31 31 H 1.09001 * 109.46787 * 59.99634 * 1 2 3 32 32 H 1.09008 * 109.47000 * 59.99745 * 3 2 1 33 33 H 1.08995 * 109.47177 * 300.00134 * 3 2 1 34 34 H 1.08002 * 128.03968 * 359.95291 * 5 4 3 35 35 H 0.96999 * 119.99336 * 359.97438 * 9 7 6 36 36 H 1.08990 * 109.46171 * 58.66589 * 12 10 9 37 37 H 1.08995 * 109.44846 * 298.69303 * 12 10 9 38 38 H 1.08998 * 109.49938 * 301.41676 * 13 12 10 39 39 H 1.09004 * 109.52569 * 181.32617 * 13 12 10 40 40 H 1.09003 * 109.58227 * 185.57834 * 14 13 12 41 41 H 1.08999 * 109.70422 * 65.22304 * 14 13 12 42 42 H 0.97000 * 120.00257 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47317 * 59.99934 * 26 24 15 44 44 H 1.09002 * 109.46620 * 179.97438 * 26 24 15 45 45 H 1.08999 * 109.47059 * 299.99874 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.3190 1.1285 -1.0845 6 6 5.6264 1.0199 -0.5340 7 6 6.9032 0.9197 -1.2823 8 8 6.8969 0.9203 -2.4972 9 7 8.0703 0.8279 -0.6144 10 6 9.3312 0.7284 -1.3534 11 1 9.2683 1.3255 -2.2633 12 6 9.5947 -0.7341 -1.7194 13 6 10.8952 -0.8350 -2.5199 14 6 12.0598 -0.3344 -1.6596 15 7 11.7479 1.0201 -1.1835 16 6 12.6243 2.0517 -1.3910 17 1 12.2558 3.0623 -1.4867 18 6 13.9863 1.7983 -1.4782 19 7 14.4677 0.6415 -1.0751 20 14 15.1360 3.0992 -2.1678 21 1 16.5293 2.5857 -2.1542 22 1 14.7406 3.4199 -3.5628 23 1 15.0518 4.3258 -1.3350 24 6 10.4805 1.2455 -0.4751 25 1 10.4908 0.7069 0.4725 26 6 10.2972 2.7422 -0.2157 27 7 5.4753 1.0320 0.7671 28 8 4.3100 1.1237 1.0759 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 4.0358 1.1559 -2.1263 35 1 8.0752 0.8277 0.3556 36 1 8.7681 -1.1126 -2.3205 37 1 9.6823 -1.3261 -0.8085 38 1 10.8176 -0.2232 -3.4187 39 1 11.0705 -1.8735 -2.8007 40 1 12.9714 -0.3109 -2.2568 41 1 12.1987 -0.9987 -0.8067 42 1 15.4194 0.4643 -1.1363 43 1 10.2811 3.2763 -1.1658 44 1 9.3563 2.9073 0.3094 45 1 11.1231 3.1093 0.3935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993929346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:18 Heat of formation + Delta-G solvation = -15.272393 kcal Electronic energy + Delta-G solvation = -27489.819434 eV Core-core repulsion = 23510.929580 eV Total energy + Delta-G solvation = -3978.889854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.26308 -41.17372 -39.29839 -38.89945 -36.04844 -35.22753 -34.34453 -33.78485 -33.36262 -31.01902 -28.71483 -28.08263 -26.98575 -26.52874 -25.88043 -24.02604 -23.34332 -22.38904 -21.42712 -20.92412 -19.06734 -19.00543 -18.36577 -17.94290 -17.37794 -17.19995 -16.80633 -16.64961 -16.20030 -16.14203 -15.67019 -15.57321 -15.20827 -14.97490 -14.80077 -14.57186 -14.33261 -13.82755 -13.39177 -13.31115 -13.20547 -12.82636 -12.74911 -12.64678 -12.56477 -12.43426 -12.37907 -12.04525 -11.92024 -11.84874 -11.73396 -11.63114 -11.43477 -11.16867 -10.75097 -10.69440 -10.53474 -10.19769 -8.68314 -7.86344 -5.33251 -0.08208 0.46390 1.46880 1.49682 1.55486 1.68434 1.85305 1.96962 2.51524 2.77430 2.99601 3.28778 3.45502 3.61166 3.79863 3.80595 3.94176 4.02461 4.09876 4.15336 4.31200 4.41944 4.45026 4.51869 4.56134 4.59557 4.67934 4.69952 4.78776 4.83945 4.85578 4.97338 4.98184 5.09118 5.11326 5.20651 5.35506 5.40063 5.54469 5.68776 5.74873 6.11632 6.24695 6.40225 6.83039 6.94754 7.14927 7.83878 8.36018 9.20401 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031985 B = 0.002402 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.191218 B =11654.856312 C =11978.348692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.144 3.856 4 C -0.026 4.026 5 C -0.163 4.163 6 C -0.045 4.045 7 C 0.597 3.403 8 O -0.555 6.555 9 N -0.693 5.693 10 C 0.146 3.854 11 H 0.069 0.931 12 C -0.111 4.111 13 C -0.128 4.128 14 C 0.174 3.826 15 N -0.599 5.599 16 C -0.255 4.255 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.295 1.295 22 H -0.281 1.281 23 H -0.275 1.275 24 C 0.164 3.836 25 H 0.031 0.969 26 C -0.128 4.128 27 N -0.336 5.336 28 O 0.138 5.862 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.197 0.803 35 H 0.412 0.588 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.003 0.997 42 H 0.249 0.751 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.875 0.851 3.379 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.067 3.933 4 C -0.089 4.089 5 C -0.186 4.186 6 C -0.203 4.203 7 C 0.382 3.618 8 O -0.432 6.432 9 N -0.344 5.344 10 C 0.040 3.960 11 H 0.087 0.913 12 C -0.150 4.150 13 C -0.167 4.167 14 C 0.048 3.952 15 N -0.322 5.322 16 C -0.385 4.385 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.221 1.221 22 H -0.207 1.207 23 H -0.201 1.201 24 C 0.057 3.943 25 H 0.048 0.952 26 C -0.185 4.185 27 N -0.033 5.033 28 O 0.058 5.942 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.214 0.786 35 H 0.248 0.752 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -27.627 0.581 3.501 27.855 hybrid contribution 0.791 0.507 -0.623 1.127 sum -26.836 1.087 2.879 27.012 Atomic orbital electron populations 1.23007 0.77866 1.04189 1.01890 1.87927 1.22556 1.27268 1.95901 1.20976 0.80363 0.86125 1.05837 1.24531 0.96433 1.03500 0.84468 1.22725 0.88843 1.04266 1.02747 1.23439 0.96873 1.09453 0.90530 1.17097 0.82159 0.76380 0.86178 1.90779 1.86918 1.51681 1.13779 1.45860 1.05241 1.72236 1.11048 1.21576 0.81909 0.97024 0.95494 0.91330 1.21707 0.97471 0.95647 1.00146 1.22014 0.95294 1.00846 0.98570 1.20684 0.95542 0.84327 0.94630 1.44279 1.17293 1.06342 1.64321 1.19421 0.86971 0.89628 1.42482 0.90906 1.25801 0.98480 0.99051 1.01178 1.70158 1.12382 1.25079 1.50313 0.85392 0.77684 0.79031 0.78636 1.22150 1.20702 1.20059 1.20783 0.85344 0.95682 0.92475 0.95167 1.21725 1.00829 0.94891 1.01084 1.74197 0.98232 1.15427 1.15454 1.84760 1.11072 1.64500 1.33907 0.88871 0.92040 0.92045 0.87874 0.86505 0.78628 0.75207 0.92351 0.91807 0.93276 0.90666 0.92253 0.97885 0.94170 0.93548 0.91372 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 113.37 1.25 1.38 16 2 O -0.42 -5.32 10.69 -148.98 -1.59 -6.91 16 3 C 0.14 1.20 6.50 71.24 0.46 1.67 16 4 C -0.03 -0.43 7.10 25.01 0.18 -0.25 16 5 C -0.16 -3.35 10.92 22.60 0.25 -3.10 16 6 C -0.05 -1.21 7.19 42.96 0.31 -0.90 16 7 C 0.60 19.27 7.81 86.93 0.68 19.95 16 8 O -0.55 -21.12 16.62 -3.69 -0.06 -21.18 16 9 N -0.69 -21.79 4.60 -443.89 -2.04 -23.84 16 10 C 0.15 5.39 2.01 45.22 0.09 5.49 16 11 H 0.07 2.88 7.58 -2.38 -0.02 2.86 16 12 C -0.11 -4.02 5.46 30.62 0.17 -3.86 16 13 C -0.13 -5.07 6.08 30.67 0.19 -4.88 16 14 C 0.17 8.46 5.28 86.36 0.46 8.91 16 15 N -0.60 -29.81 2.99 -674.40 -2.01 -31.83 16 16 C -0.26 -13.78 8.59 84.03 0.72 -13.05 16 17 H 0.07 3.82 6.22 -2.91 -0.02 3.80 16 18 C -0.05 -2.76 4.96 84.86 0.42 -2.34 16 19 N -0.93 -54.86 11.14 21.65 0.24 -54.61 16 20 Si 0.96 45.02 29.58 68.60 2.03 47.05 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 C 0.16 6.74 3.05 45.12 0.14 6.87 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 C -0.13 -4.80 7.83 71.98 0.56 -4.24 16 27 N -0.34 -8.41 11.84 -49.52 -0.59 -8.99 16 28 O 0.14 2.84 11.18 71.87 0.80 3.65 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.20 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.41 11.54 8.36 -92.71 -0.78 10.77 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 40 H 0.06 3.26 6.06 -2.39 -0.01 3.24 16 41 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.05 1.81 7.44 -2.39 -0.02 1.79 16 44 H 0.07 2.12 7.82 -2.39 -0.02 2.10 16 45 H 0.05 2.10 7.62 -2.39 -0.02 2.08 16 Total: -1.00 -69.84 370.78 2.88 -66.96 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.23 Total: 18.04 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.87 Total: 11.66 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -4.40 Total: -119.27 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.85 Total: -24.44 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.84 2.88 -66.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993929346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.691 kcal (2) G-P(sol) polarization free energy of solvation -69.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds