Wall clock time and date at job start Tue Mar 31 2020 14:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00062 * 2 1 4 4 C 1.50700 * 109.47220 * 179.97438 * 3 2 1 5 5 C 1.35313 * 126.66659 * 90.00010 * 4 3 2 6 6 C 1.42270 * 103.92524 * 180.02562 * 5 4 3 7 7 C 1.48326 * 126.94124 * 180.02562 * 6 5 4 8 8 O 1.21493 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99929 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99765 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.49594 * 324.93100 * 10 9 7 12 12 C 1.53036 * 109.49899 * 84.99795 * 10 9 7 13 13 C 1.53041 * 109.53863 * 58.58565 * 12 10 9 14 14 C 1.53190 * 109.31202 * 61.36368 * 13 12 10 15 15 N 1.46926 * 108.77649 * 305.36587 * 14 13 12 16 16 C 1.36942 * 120.63119 * 233.58329 * 15 14 13 17 17 H 1.07994 * 119.99757 * 150.44835 * 16 15 14 18 18 C 1.38803 * 119.99901 * 330.45070 * 16 15 14 19 19 N 1.31627 * 120.00440 * 344.27961 * 18 16 15 20 20 Si 1.86807 * 120.00016 * 164.28036 * 18 16 15 21 21 H 1.48498 * 109.47151 * 266.30609 * 20 18 16 22 22 H 1.48498 * 109.46741 * 26.30055 * 20 18 16 23 23 H 1.48497 * 109.47281 * 146.30033 * 20 18 16 24 24 C 1.46919 * 118.73788 * 53.86366 * 15 14 13 25 25 H 1.09000 * 109.59079 * 65.92297 * 24 15 14 26 26 C 1.53008 * 109.58924 * 186.35353 * 24 15 14 27 27 N 1.30991 * 106.11738 * 0.25735 * 6 5 4 28 28 O 1.20897 * 111.44010 * 359.54322 * 27 6 5 29 29 H 1.09000 * 109.47456 * 59.99779 * 1 2 3 30 30 H 1.08998 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47488 * 299.99850 * 1 2 3 32 32 H 1.09002 * 109.46475 * 59.99923 * 3 2 1 33 33 H 1.08996 * 109.46821 * 300.00294 * 3 2 1 34 34 H 1.08004 * 128.03863 * 0.02562 * 5 4 3 35 35 H 0.97002 * 119.99870 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.46143 * 298.56504 * 12 10 9 37 37 H 1.09003 * 109.44990 * 178.59738 * 12 10 9 38 38 H 1.09001 * 109.49567 * 301.41446 * 13 12 10 39 39 H 1.08994 * 109.52617 * 181.33132 * 13 12 10 40 40 H 1.09004 * 109.58998 * 185.57639 * 14 13 12 41 41 H 1.08997 * 109.70471 * 65.22174 * 14 13 12 42 42 H 0.96995 * 119.99891 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.46897 * 59.99342 * 26 24 15 44 44 H 1.08997 * 109.47044 * 179.97438 * 26 24 15 45 45 H 1.08993 * 109.46772 * 299.99546 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3185 1.1225 -1.0844 6 6 5.6262 1.0184 -0.5339 7 6 6.9029 0.9175 -1.2821 8 8 6.8968 0.9181 -2.4970 9 7 8.0699 0.8250 -0.6141 10 6 9.3309 0.7247 -1.3532 11 1 9.1744 0.1447 -2.2627 12 6 9.8210 2.1273 -1.7198 13 6 10.0089 2.9533 -0.4452 14 6 11.0677 2.2869 0.4389 15 7 10.6749 0.8912 0.6767 16 6 10.5840 0.3994 1.9515 17 1 9.8845 -0.3920 2.1764 18 6 11.3910 0.9182 2.9546 19 7 12.4427 1.6458 2.6430 20 14 10.9846 0.5837 4.7470 21 1 10.1616 1.6970 5.2840 22 1 10.2262 -0.6885 4.8534 23 1 12.2429 0.4768 5.5283 24 6 10.3875 0.0315 -0.4795 25 1 11.2994 -0.1218 -1.0567 26 6 9.8508 -1.3171 0.0048 27 7 5.4746 1.0247 0.7672 28 8 4.3098 1.1230 1.0759 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 4.0349 1.1452 -2.1263 35 1 8.0749 0.8248 0.3559 36 1 9.0859 2.6126 -2.3619 37 1 10.7717 2.0531 -2.2478 38 1 9.0643 3.0069 0.0961 39 1 10.3353 3.9595 -0.7079 40 1 11.1345 2.8148 1.3902 41 1 12.0351 2.3138 -0.0625 42 1 13.0068 2.0080 3.3440 43 1 8.9357 -1.1600 0.5759 44 1 9.6378 -1.9531 -0.8544 45 1 10.5960 -1.7985 0.6378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993929352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:23 Heat of formation + Delta-G solvation = 7.454347 kcal Electronic energy + Delta-G solvation = -28245.257637 eV Core-core repulsion = 24267.353288 eV Total energy + Delta-G solvation = -3977.904349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.16404 -39.73106 -38.36471 -37.62358 -34.08982 -34.02863 -32.94101 -32.31980 -31.61554 -29.43328 -28.10788 -26.43967 -25.98781 -25.09682 -24.59443 -22.80578 -21.87174 -20.81083 -20.04304 -18.77454 -18.03721 -17.97125 -16.82723 -16.64375 -16.42996 -16.24459 -15.40325 -15.34577 -14.89128 -14.81164 -14.14922 -13.92121 -13.75367 -13.49867 -13.28721 -13.10683 -13.00347 -12.60891 -12.58582 -11.96455 -11.87708 -11.60829 -11.30236 -11.26013 -10.96860 -10.71580 -10.63683 -10.52206 -10.48296 -10.23713 -10.12493 -10.03332 -9.96211 -9.78485 -9.67821 -9.31927 -8.62824 -8.47074 -6.68393 -5.81080 -3.26759 1.03268 1.51870 2.65067 3.21917 3.35027 3.37138 3.44803 3.45459 3.60810 4.00791 4.37387 4.46640 4.61583 4.79049 4.87510 4.92004 4.95910 5.24706 5.26031 5.27514 5.31065 5.34737 5.53825 5.57729 5.70723 5.72718 5.93275 6.09918 6.20495 6.27965 6.39666 6.49697 6.55403 6.62420 6.65686 6.75299 6.90982 6.93565 7.04612 7.36875 7.65215 7.75934 7.79920 8.03083 8.39848 8.42923 9.18177 9.80669 10.37475 11.26841 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.003567 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.049997 B = 7848.812430 C = 9060.003060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.147 3.853 4 C -0.049 4.049 5 C -0.154 4.154 6 C -0.025 4.025 7 C 0.591 3.409 8 O -0.538 6.538 9 N -0.680 5.680 10 C 0.132 3.868 11 H 0.079 0.921 12 C -0.121 4.121 13 C -0.141 4.141 14 C 0.171 3.829 15 N -0.586 5.586 16 C -0.256 4.256 17 H 0.071 0.929 18 C 0.007 3.993 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.278 1.278 23 H -0.292 1.292 24 C 0.160 3.840 25 H 0.044 0.956 26 C -0.137 4.137 27 N -0.315 5.315 28 O 0.134 5.866 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.182 0.818 35 H 0.416 0.584 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.052 0.948 44 H 0.040 0.960 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.157 0.459 -6.848 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.070 3.930 4 C -0.112 4.112 5 C -0.176 4.176 6 C -0.184 4.184 7 C 0.374 3.626 8 O -0.415 6.415 9 N -0.331 5.331 10 C 0.026 3.974 11 H 0.097 0.903 12 C -0.159 4.159 13 C -0.181 4.181 14 C 0.046 3.954 15 N -0.310 5.310 16 C -0.385 4.385 17 H 0.088 0.912 18 C -0.192 4.192 19 N -0.544 5.544 20 Si 0.730 3.270 21 H -0.214 1.214 22 H -0.203 1.203 23 H -0.218 1.218 24 C 0.052 3.948 25 H 0.061 0.939 26 C -0.195 4.195 27 N -0.012 5.012 28 O 0.054 5.946 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.199 0.801 35 H 0.253 0.747 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.038 0.962 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.941 0.259 -6.593 20.057 hybrid contribution -0.624 0.209 0.682 0.947 sum -19.565 0.468 -5.911 20.444 Atomic orbital electron populations 1.22816 0.79812 1.03450 1.00400 1.87993 1.20449 1.26374 1.95549 1.20622 0.83200 0.86107 1.03120 1.23888 0.94991 1.06318 0.85999 1.22454 0.89869 1.03950 1.01353 1.23687 0.97151 1.07619 0.89992 1.16875 0.81694 0.77648 0.86348 1.90750 1.86663 1.51651 1.12439 1.45920 1.04950 1.70488 1.11770 1.21762 0.83288 0.97175 0.95214 0.90253 1.21779 1.00436 0.95680 0.98051 1.22151 1.01467 0.97803 0.96636 1.20798 0.91952 0.84443 0.98247 1.44187 1.80166 1.05886 1.00720 1.19169 1.15606 1.19515 0.84233 0.91188 1.25094 0.95069 1.00527 0.98530 1.70030 1.14485 1.38296 1.31580 0.86316 0.77248 0.78162 0.85287 1.21434 1.20326 1.21843 1.20817 0.93664 0.90382 0.89929 0.93900 1.21795 1.01502 0.96170 0.99997 1.74303 0.96853 1.14310 1.15779 1.84819 1.11512 1.65075 1.33182 0.93575 0.89077 0.93506 0.90381 0.89401 0.80113 0.74662 0.93047 0.91571 0.92954 0.93309 0.89583 0.96241 0.93660 0.92868 0.94124 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.44 10.69 -35.23 -0.38 -3.82 16 3 C 0.15 1.07 6.50 36.01 0.23 1.30 16 4 C -0.05 -0.55 7.10 -35.35 -0.25 -0.80 16 5 C -0.15 -1.95 10.92 -39.08 -0.43 -2.37 16 6 C -0.03 -0.40 7.19 -82.53 -0.59 -1.00 16 7 C 0.59 10.61 7.81 -12.11 -0.09 10.52 16 8 O -0.54 -10.51 16.62 5.37 0.09 -10.42 16 9 N -0.68 -12.46 3.47 -54.26 -0.19 -12.65 16 10 C 0.13 2.41 2.33 -67.58 -0.16 2.25 16 11 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 12 C -0.12 -2.17 5.57 -26.69 -0.15 -2.32 16 13 C -0.14 -2.75 5.93 -26.61 -0.16 -2.91 16 14 C 0.17 3.97 5.28 -3.71 -0.02 3.95 16 15 N -0.59 -13.79 2.63 -164.52 -0.43 -14.23 16 16 C -0.26 -6.61 8.57 -15.06 -0.13 -6.74 16 17 H 0.07 1.79 6.24 -52.49 -0.33 1.46 16 18 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 19 N -0.90 -25.50 11.23 55.49 0.62 -24.87 16 20 Si 0.90 21.44 29.58 -169.99 -5.03 16.42 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.16 3.22 3.22 -67.37 -0.22 3.00 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 26 C -0.14 -2.59 7.75 37.16 0.29 -2.30 16 27 N -0.31 -5.08 11.84 33.29 0.39 -4.69 16 28 O 0.13 1.83 11.18 17.25 0.19 2.02 16 29 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.18 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.42 8.14 7.55 -40.82 -0.31 7.83 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.06 7.53 -51.93 -0.39 0.67 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 2.25 6.13 -51.93 -0.32 1.93 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 1.02 6.42 -51.93 -0.33 0.69 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.33 7.62 -51.93 -0.40 0.94 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -30.94 367.69 -6.51 -37.45 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.68 Total: 5.29 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.65 Total: 3.96 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.40 Total: -56.44 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.09 Total: -12.21 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.94 -6.51 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993929352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.901 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds