Wall clock time and date at job start Tue Mar 31 2020 14:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00062 * 2 1 4 4 C 1.50700 * 109.47220 * 179.97438 * 3 2 1 5 5 C 1.35313 * 126.66659 * 90.00010 * 4 3 2 6 6 C 1.42270 * 103.92524 * 180.02562 * 5 4 3 7 7 C 1.48326 * 126.94124 * 180.02562 * 6 5 4 8 8 O 1.21493 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99929 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99765 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.49594 * 324.93100 * 10 9 7 12 12 C 1.53036 * 109.49899 * 84.99795 * 10 9 7 13 13 C 1.53041 * 109.53863 * 58.58565 * 12 10 9 14 14 C 1.53190 * 109.31202 * 61.36368 * 13 12 10 15 15 N 1.46926 * 108.77649 * 305.36587 * 14 13 12 16 16 C 1.36942 * 120.63119 * 233.58329 * 15 14 13 17 17 H 1.07994 * 119.99757 * 150.44835 * 16 15 14 18 18 C 1.38803 * 119.99901 * 330.45070 * 16 15 14 19 19 N 1.31627 * 120.00440 * 344.27961 * 18 16 15 20 20 Si 1.86807 * 120.00016 * 164.28036 * 18 16 15 21 21 H 1.48498 * 109.47151 * 266.30609 * 20 18 16 22 22 H 1.48498 * 109.46741 * 26.30055 * 20 18 16 23 23 H 1.48497 * 109.47281 * 146.30033 * 20 18 16 24 24 C 1.46919 * 118.73788 * 53.86366 * 15 14 13 25 25 H 1.09000 * 109.59079 * 65.92297 * 24 15 14 26 26 C 1.53008 * 109.58924 * 186.35353 * 24 15 14 27 27 N 1.30991 * 106.11738 * 0.25735 * 6 5 4 28 28 O 1.20897 * 111.44010 * 359.54322 * 27 6 5 29 29 H 1.09000 * 109.47456 * 59.99779 * 1 2 3 30 30 H 1.08998 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47488 * 299.99850 * 1 2 3 32 32 H 1.09002 * 109.46475 * 59.99923 * 3 2 1 33 33 H 1.08996 * 109.46821 * 300.00294 * 3 2 1 34 34 H 1.08004 * 128.03863 * 0.02562 * 5 4 3 35 35 H 0.97002 * 119.99870 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.46143 * 298.56504 * 12 10 9 37 37 H 1.09003 * 109.44990 * 178.59738 * 12 10 9 38 38 H 1.09001 * 109.49567 * 301.41446 * 13 12 10 39 39 H 1.08994 * 109.52617 * 181.33132 * 13 12 10 40 40 H 1.09004 * 109.58998 * 185.57639 * 14 13 12 41 41 H 1.08997 * 109.70471 * 65.22174 * 14 13 12 42 42 H 0.96995 * 119.99891 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.46897 * 59.99342 * 26 24 15 44 44 H 1.08997 * 109.47044 * 179.97438 * 26 24 15 45 45 H 1.08993 * 109.46772 * 299.99546 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3185 1.1225 -1.0844 6 6 5.6262 1.0184 -0.5339 7 6 6.9029 0.9175 -1.2821 8 8 6.8968 0.9181 -2.4970 9 7 8.0699 0.8250 -0.6141 10 6 9.3309 0.7247 -1.3532 11 1 9.1744 0.1447 -2.2627 12 6 9.8210 2.1273 -1.7198 13 6 10.0089 2.9533 -0.4452 14 6 11.0677 2.2869 0.4389 15 7 10.6749 0.8912 0.6767 16 6 10.5840 0.3994 1.9515 17 1 9.8845 -0.3920 2.1764 18 6 11.3910 0.9182 2.9546 19 7 12.4427 1.6458 2.6430 20 14 10.9846 0.5837 4.7470 21 1 10.1616 1.6970 5.2840 22 1 10.2262 -0.6885 4.8534 23 1 12.2429 0.4768 5.5283 24 6 10.3875 0.0315 -0.4795 25 1 11.2994 -0.1218 -1.0567 26 6 9.8508 -1.3171 0.0048 27 7 5.4746 1.0247 0.7672 28 8 4.3098 1.1230 1.0759 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 4.0349 1.1452 -2.1263 35 1 8.0749 0.8248 0.3559 36 1 9.0859 2.6126 -2.3619 37 1 10.7717 2.0531 -2.2478 38 1 9.0643 3.0069 0.0961 39 1 10.3353 3.9595 -0.7079 40 1 11.1345 2.8148 1.3902 41 1 12.0351 2.3138 -0.0625 42 1 13.0068 2.0080 3.3440 43 1 8.9357 -1.1600 0.5759 44 1 9.6378 -1.9531 -0.8544 45 1 10.5960 -1.7985 0.6378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993929352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:22 Heat of formation + Delta-G solvation = -12.526154 kcal Electronic energy + Delta-G solvation = -28246.124056 eV Core-core repulsion = 24267.353288 eV Total energy + Delta-G solvation = -3978.770768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.25439 -41.21338 -39.22606 -38.90131 -35.72888 -35.19370 -34.18140 -33.75009 -33.30140 -31.16563 -28.71159 -28.06795 -26.92907 -26.53849 -25.89132 -23.98001 -23.49987 -22.43282 -21.39792 -20.36508 -19.05621 -19.01909 -18.31309 -18.02663 -17.20636 -17.15052 -16.76494 -16.55189 -16.29406 -16.18556 -15.72020 -15.44538 -15.09129 -14.82598 -14.76622 -14.58432 -14.29464 -13.83072 -13.60801 -13.20300 -13.01652 -12.94188 -12.76200 -12.60002 -12.50148 -12.38083 -12.37123 -12.24158 -11.95459 -11.73934 -11.60890 -11.47241 -11.38334 -11.07502 -10.74493 -10.69596 -10.52772 -10.08964 -8.64217 -7.85055 -5.31652 -0.03354 0.48934 1.45764 1.48622 1.55639 1.77169 1.96794 2.02804 2.50836 2.85292 3.01445 3.30716 3.50521 3.55201 3.81949 3.90368 4.00627 4.04841 4.12079 4.15623 4.34318 4.42447 4.50121 4.52440 4.59102 4.61117 4.67476 4.70510 4.80989 4.89057 4.94736 4.96343 4.98306 5.06269 5.15852 5.29207 5.38597 5.47258 5.54222 5.70959 5.76193 6.11639 6.36429 6.41764 6.88115 7.01547 7.17017 7.86191 8.38700 9.21184 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.003567 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.049997 B = 7848.812430 C = 9060.003060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.145 3.855 4 C -0.032 4.032 5 C -0.159 4.159 6 C -0.050 4.050 7 C 0.594 3.406 8 O -0.556 6.556 9 N -0.683 5.683 10 C 0.139 3.861 11 H 0.090 0.910 12 C -0.114 4.114 13 C -0.127 4.127 14 C 0.179 3.821 15 N -0.597 5.597 16 C -0.249 4.249 17 H 0.073 0.927 18 C -0.046 4.046 19 N -0.933 5.933 20 Si 0.956 3.044 21 H -0.290 1.290 22 H -0.269 1.269 23 H -0.298 1.298 24 C 0.156 3.844 25 H 0.043 0.957 26 C -0.129 4.129 27 N -0.343 5.343 28 O 0.135 5.865 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.201 0.799 35 H 0.409 0.591 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.002 0.998 42 H 0.247 0.753 43 H 0.046 0.954 44 H 0.067 0.933 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.879 0.331 -7.761 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C 0.069 3.931 4 C -0.095 4.095 5 C -0.181 4.181 6 C -0.207 4.207 7 C 0.379 3.621 8 O -0.434 6.434 9 N -0.333 5.333 10 C 0.033 3.967 11 H 0.108 0.892 12 C -0.153 4.153 13 C -0.166 4.166 14 C 0.053 3.947 15 N -0.321 5.321 16 C -0.379 4.379 17 H 0.090 0.910 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.786 3.214 21 H -0.217 1.217 22 H -0.194 1.194 23 H -0.225 1.225 24 C 0.050 3.950 25 H 0.060 0.940 26 C -0.186 4.186 27 N -0.040 5.040 28 O 0.054 5.946 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.218 0.782 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.020 0.980 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.684 0.115 -7.528 22.954 hybrid contribution 0.106 0.221 0.925 0.957 sum -21.578 0.336 -6.603 22.568 Atomic orbital electron populations 1.23008 0.77871 1.04186 1.01876 1.87932 1.22565 1.27235 1.95893 1.20961 0.80278 0.86121 1.05772 1.24625 0.96553 1.03727 0.84605 1.22718 0.88515 1.04203 1.02704 1.23621 0.97430 1.09327 0.90365 1.17057 0.82082 0.76789 0.86215 1.90728 1.87057 1.52500 1.13104 1.45914 1.05222 1.70826 1.11301 1.21624 0.82838 0.97315 0.94919 0.89188 1.21733 1.01224 0.95129 0.97200 1.21958 0.99514 0.98649 0.96528 1.20586 0.92449 0.84585 0.97076 1.44346 1.80079 1.06568 1.01126 1.19416 1.14541 1.18591 0.85326 0.90960 1.25729 0.95362 1.01309 1.01756 1.70166 1.15649 1.40008 1.32054 0.85416 0.76551 0.78078 0.81396 1.21702 1.19385 1.22503 1.20964 0.94302 0.90746 0.89006 0.93968 1.21705 1.00463 0.95725 1.00713 1.74301 0.98173 1.15447 1.16106 1.84777 1.11154 1.64468 1.34164 0.91876 0.88843 0.92220 0.88183 0.86252 0.78184 0.75436 0.92214 0.90479 0.93859 0.91557 0.92909 0.98015 0.94341 0.93530 0.91376 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.33 10.69 -148.98 -1.59 -7.92 16 3 C 0.15 1.63 6.50 71.24 0.46 2.09 16 4 C -0.03 -0.64 7.10 25.01 0.18 -0.46 16 5 C -0.16 -3.72 10.92 22.60 0.25 -3.47 16 6 C -0.05 -1.55 7.19 42.96 0.31 -1.24 16 7 C 0.59 20.79 7.81 86.93 0.68 21.47 16 8 O -0.56 -20.94 16.62 -3.69 -0.06 -21.00 16 9 N -0.68 -24.56 3.47 -443.87 -1.54 -26.10 16 10 C 0.14 4.92 2.33 45.22 0.11 5.03 16 11 H 0.09 3.06 7.58 -2.38 -0.02 3.04 16 12 C -0.11 -3.95 5.57 30.62 0.17 -3.78 16 13 C -0.13 -4.90 5.93 30.67 0.18 -4.72 16 14 C 0.18 8.45 5.28 86.36 0.46 8.91 16 15 N -0.60 -28.38 2.63 -674.42 -1.78 -30.16 16 16 C -0.25 -12.99 8.57 84.03 0.72 -12.27 16 17 H 0.07 3.70 6.24 -2.91 -0.02 3.68 16 18 C -0.05 -2.51 4.94 84.86 0.42 -2.10 16 19 N -0.93 -54.35 11.23 21.65 0.24 -54.10 16 20 Si 0.96 44.85 29.58 68.60 2.03 46.88 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 24 C 0.16 6.22 3.22 45.13 0.15 6.36 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 26 C -0.13 -4.74 7.75 71.98 0.56 -4.18 16 27 N -0.34 -10.91 11.84 -49.52 -0.59 -11.49 16 28 O 0.14 3.54 11.18 71.92 0.80 4.35 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 35 H 0.41 16.00 7.55 -92.71 -0.70 15.30 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.04 1.74 7.53 -2.39 -0.02 1.72 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.05 2.85 6.13 -2.38 -0.01 2.84 16 41 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.05 1.76 6.42 -2.39 -0.02 1.75 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.05 2.01 7.62 -2.39 -0.02 1.99 16 Total: -1.00 -67.59 367.69 3.71 -63.88 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.31 Total: 22.59 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 5.88 Total: 13.08 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -3.66 Total: -121.85 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.85 Total: -24.58 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -67.59 3.71 -63.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993929352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.353 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds