Wall clock time and date at job start Tue Mar 31 2020 14:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99904 * 2 1 4 4 C 1.50699 * 109.47085 * 180.02562 * 3 2 1 5 5 C 1.35319 * 126.66691 * 89.71292 * 4 3 2 6 6 C 1.42273 * 103.91892 * 179.90930 * 5 4 3 7 7 C 1.48331 * 126.93127 * 180.12776 * 6 5 4 8 8 O 1.21490 * 120.00637 * 0.25158 * 7 6 5 9 9 N 1.34778 * 119.99346 * 180.24663 * 7 6 5 10 10 C 1.46508 * 119.99691 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.49924 * 324.93713 * 10 9 7 12 12 C 1.53042 * 109.49566 * 85.00366 * 10 9 7 13 13 C 1.53038 * 109.53667 * 181.31759 * 12 10 9 14 14 C 1.53198 * 109.31101 * 298.63194 * 13 12 10 15 15 N 1.46920 * 108.77499 * 54.63822 * 14 13 12 16 16 C 1.36935 * 120.63472 * 126.41276 * 15 14 13 17 17 H 1.08000 * 120.00656 * 209.00478 * 16 15 14 18 18 C 1.38810 * 119.99557 * 29.00234 * 16 15 14 19 19 N 1.31617 * 120.00481 * 15.02862 * 18 16 15 20 20 Si 1.86807 * 119.99909 * 195.03031 * 18 16 15 21 21 H 1.48502 * 109.47127 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46950 * 120.00173 * 20 18 16 23 23 H 1.48495 * 109.47387 * 240.00070 * 20 18 16 24 24 C 1.46929 * 118.73848 * 306.38823 * 15 14 13 25 25 H 1.08995 * 109.58845 * 293.82618 * 24 15 14 26 26 C 1.53003 * 109.58787 * 173.39659 * 24 15 14 27 27 N 1.30987 * 106.12338 * 0.35274 * 6 5 4 28 28 O 1.20902 * 111.43968 * 359.77242 * 27 6 5 29 29 H 1.09000 * 109.47149 * 59.99790 * 1 2 3 30 30 H 1.08999 * 109.46557 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47073 * 299.99817 * 1 2 3 32 32 H 1.08994 * 109.47044 * 299.99920 * 3 2 1 33 33 H 1.09004 * 109.46860 * 59.99841 * 3 2 1 34 34 H 1.07998 * 128.03409 * 359.97438 * 5 4 3 35 35 H 0.97001 * 120.00386 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.45957 * 301.33925 * 12 10 9 37 37 H 1.09003 * 109.46243 * 61.29463 * 12 10 9 38 38 H 1.08998 * 109.49934 * 58.58534 * 13 12 10 39 39 H 1.09000 * 109.49577 * 178.68169 * 13 12 10 40 40 H 1.09000 * 109.58465 * 174.42657 * 14 13 12 41 41 H 1.09000 * 109.58865 * 294.84862 * 14 13 12 42 42 H 0.97004 * 120.00485 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.46915 * 300.71385 * 26 24 15 44 44 H 1.08995 * 109.47104 * 60.70910 * 26 24 15 45 45 H 1.08996 * 109.47271 * 180.71424 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.3172 1.1175 -1.0864 6 6 5.6258 1.0188 -0.5368 7 6 6.9019 0.9176 -1.2862 8 8 6.8947 0.9182 -2.5011 9 7 8.0694 0.8251 -0.6192 10 6 9.3298 0.7247 -1.3593 11 1 9.1725 0.1447 -2.2686 12 6 9.8198 2.1273 -1.7264 13 6 11.1192 2.0220 -2.5279 14 6 12.1913 1.3450 -1.6681 15 7 11.6707 0.0567 -1.1909 16 6 12.3737 -1.1000 -1.3983 17 1 11.8509 -2.0402 -1.4930 18 6 13.7585 -1.0640 -1.4870 19 7 14.4163 0.0028 -1.0849 20 14 14.6887 -2.5297 -2.1769 21 1 13.7248 -3.5940 -2.5557 22 1 15.4568 -2.1086 -3.3761 23 1 15.6239 -3.0514 -1.1482 24 6 10.3816 0.0329 -0.4863 25 1 10.4739 0.5615 0.4624 26 6 9.9633 -1.4164 -0.2308 27 7 5.4757 1.0303 0.7644 28 8 4.3107 1.1228 1.0740 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 4.0323 1.1346 -2.1280 35 1 8.0752 0.8243 0.3508 36 1 9.0623 2.6309 -2.3271 37 1 10.0000 2.6989 -0.8159 38 1 10.9456 1.4296 -3.4262 39 1 11.4551 3.0202 -2.8090 40 1 13.0874 1.1782 -2.2659 41 1 12.4313 1.9805 -0.8157 42 1 15.3840 0.0278 -1.1465 43 1 9.8782 -1.9430 -1.1814 44 1 10.7128 -1.9068 0.3903 45 1 9.0009 -1.4321 0.2806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993929354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:25 Heat of formation + Delta-G solvation = -15.263876 kcal Electronic energy + Delta-G solvation = -27499.630288 eV Core-core repulsion = 23520.740803 eV Total energy + Delta-G solvation = -3978.889485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.26303 -41.18457 -39.31187 -38.89924 -36.05505 -35.22764 -34.34640 -33.78846 -33.36708 -31.02906 -28.71415 -28.08489 -26.99426 -26.52993 -25.88389 -24.02863 -23.35181 -22.39291 -21.42928 -20.92217 -19.05738 -19.01603 -18.37242 -17.94329 -17.38675 -17.20063 -16.81209 -16.65029 -16.19726 -16.14900 -15.66315 -15.58015 -15.20824 -14.97628 -14.80070 -14.58296 -14.33429 -13.82661 -13.39901 -13.31938 -13.20551 -12.86088 -12.77056 -12.64533 -12.55634 -12.42059 -12.37788 -12.02980 -11.90990 -11.84193 -11.73760 -11.63156 -11.43558 -11.16621 -10.75222 -10.69383 -10.55473 -10.19929 -8.68893 -7.87104 -5.33612 -0.08249 0.46203 1.45301 1.47953 1.57391 1.68370 1.85128 1.97235 2.50775 2.77337 2.99761 3.28305 3.45364 3.60840 3.79947 3.80707 3.94007 4.02625 4.09951 4.15750 4.31025 4.42006 4.45092 4.51951 4.55833 4.59363 4.67909 4.69455 4.78806 4.83493 4.85536 4.97269 4.98470 5.09288 5.11025 5.20668 5.34892 5.39468 5.54587 5.68851 5.74848 6.11758 6.24573 6.39887 6.82978 6.94697 7.14661 7.83444 8.35291 9.20027 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027332 B = 0.002450 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.208867 B =11425.773553 C =11836.441957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.144 3.856 4 C -0.026 4.026 5 C -0.163 4.163 6 C -0.045 4.045 7 C 0.597 3.403 8 O -0.554 6.554 9 N -0.693 5.693 10 C 0.146 3.854 11 H 0.067 0.933 12 C -0.110 4.110 13 C -0.128 4.128 14 C 0.174 3.826 15 N -0.599 5.599 16 C -0.253 4.253 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.933 5.933 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.164 3.836 25 H 0.031 0.969 26 C -0.129 4.129 27 N -0.335 5.335 28 O 0.138 5.862 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.196 0.804 35 H 0.412 0.588 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.004 0.996 42 H 0.249 0.751 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.601 5.254 3.356 29.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C 0.067 3.933 4 C -0.089 4.089 5 C -0.186 4.186 6 C -0.203 4.203 7 C 0.382 3.618 8 O -0.431 6.431 9 N -0.344 5.344 10 C 0.040 3.960 11 H 0.086 0.914 12 C -0.149 4.149 13 C -0.168 4.168 14 C 0.048 3.952 15 N -0.323 5.323 16 C -0.383 4.383 17 H 0.090 0.910 18 C -0.245 4.245 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.193 1.193 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.057 3.943 25 H 0.049 0.951 26 C -0.186 4.186 27 N -0.033 5.033 28 O 0.058 5.942 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.214 0.786 35 H 0.248 0.752 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.022 0.978 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -27.365 5.002 3.473 28.034 hybrid contribution 0.734 -0.458 -0.615 1.061 sum -26.631 4.545 2.858 27.167 Atomic orbital electron populations 1.23006 0.77868 1.04170 1.01897 1.87932 1.22559 1.27297 1.95903 1.20980 0.80360 0.86114 1.05851 1.24539 0.96427 1.03510 0.84471 1.22728 0.88844 1.04233 1.02757 1.23439 0.96857 1.09474 0.90529 1.17092 0.82120 0.76411 0.86179 1.90779 1.86988 1.51602 1.13776 1.45862 1.05240 1.72238 1.11047 1.21487 0.81944 0.97155 0.95452 0.91446 1.21704 0.97077 0.95913 1.00189 1.22019 0.95631 1.00556 0.98563 1.20690 0.94861 0.84994 0.94645 1.44278 1.19177 1.04320 1.64492 1.19483 0.88437 0.88129 1.42221 0.90960 1.25784 0.97683 0.99786 1.01264 1.70167 1.06612 1.30684 1.50483 0.85269 0.78499 0.79642 0.77420 1.19287 1.21839 1.21924 1.20688 0.85434 0.95519 0.92614 0.95121 1.21732 1.00188 0.95611 1.01064 1.74197 0.98255 1.15422 1.15432 1.84759 1.11083 1.64476 1.33915 0.92030 0.88920 0.92019 0.86494 0.87841 0.78635 0.75204 0.92219 0.91703 0.93309 0.90587 0.92257 0.97821 0.94168 0.93634 0.92926 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 113.37 1.25 1.39 16 2 O -0.42 -5.39 10.69 -148.98 -1.59 -6.98 16 3 C 0.14 1.20 6.50 71.24 0.46 1.66 16 4 C -0.03 -0.43 7.10 25.01 0.18 -0.25 16 5 C -0.16 -3.34 10.92 22.60 0.25 -3.09 16 6 C -0.05 -1.21 7.19 42.96 0.31 -0.90 16 7 C 0.60 19.25 7.81 86.93 0.68 19.93 16 8 O -0.55 -21.09 16.62 -3.69 -0.06 -21.15 16 9 N -0.69 -21.77 4.57 -444.56 -2.03 -23.80 16 10 C 0.15 5.37 1.99 45.07 0.09 5.46 16 11 H 0.07 2.84 7.58 -2.39 -0.02 2.82 16 12 C -0.11 -3.94 5.46 30.62 0.17 -3.77 16 13 C -0.13 -5.04 6.08 30.67 0.19 -4.86 16 14 C 0.17 8.42 5.29 86.37 0.46 8.88 16 15 N -0.60 -29.85 2.99 -675.23 -2.02 -31.87 16 16 C -0.25 -13.69 8.61 84.03 0.72 -12.97 16 17 H 0.07 3.83 6.20 -2.91 -0.02 3.82 16 18 C -0.05 -2.78 4.96 84.86 0.42 -2.36 16 19 N -0.93 -54.87 11.14 21.65 0.24 -54.63 16 20 Si 0.96 45.21 29.58 68.60 2.03 47.24 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 C 0.16 6.76 3.03 44.98 0.14 6.90 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 C -0.13 -4.89 7.84 71.98 0.56 -4.33 16 27 N -0.34 -8.40 11.84 -49.51 -0.59 -8.99 16 28 O 0.14 2.84 11.18 71.90 0.80 3.64 16 29 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.20 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.41 11.53 8.36 -92.71 -0.78 10.76 16 36 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.06 3.25 6.06 -2.39 -0.01 3.24 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.04 1.81 7.40 -2.38 -0.02 1.79 16 44 H 0.05 2.12 7.66 -2.39 -0.02 2.10 16 45 H 0.07 2.14 7.78 -2.39 -0.02 2.12 16 Total: -1.00 -70.05 370.69 2.88 -67.17 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.23 Total: 17.66 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.87 Total: 11.70 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -4.40 Total: -119.29 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.85 Total: -24.48 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.05 2.88 -67.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993929354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.906 kcal (2) G-P(sol) polarization free energy of solvation -70.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds