Wall clock time and date at job start Tue Mar 31 2020 14:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99976 * 2 1 4 4 C 1.50702 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.29944 * 125.37089 * 90.31288 * 4 3 2 6 6 C 1.36067 * 108.46882 * 180.11487 * 5 4 3 7 7 C 1.47421 * 126.44515 * 179.85958 * 6 5 4 8 8 O 1.21613 * 120.00080 * 179.69215 * 7 6 5 9 9 N 1.34778 * 120.00122 * 359.68635 * 7 6 5 10 10 C 1.46503 * 120.00240 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.49501 * 34.94479 * 10 9 7 12 12 C 1.53037 * 109.52403 * 274.86029 * 10 9 7 13 13 C 1.53043 * 109.53810 * 301.39519 * 12 10 9 14 14 C 1.53625 * 109.24117 * 298.51263 * 13 12 10 15 15 N 1.46929 * 108.54171 * 54.85750 * 14 13 12 16 16 C 1.36938 * 120.63047 * 126.36939 * 15 14 13 17 17 H 1.08000 * 119.99801 * 210.87154 * 16 15 14 18 18 C 1.38811 * 120.00052 * 30.87101 * 16 15 14 19 19 N 1.31619 * 120.00079 * 23.57572 * 18 16 15 20 20 Si 1.86802 * 120.00114 * 203.57655 * 18 16 15 21 21 H 1.48496 * 109.47175 * 179.97438 * 20 18 16 22 22 H 1.48508 * 109.46715 * 59.99734 * 20 18 16 23 23 H 1.48492 * 109.46988 * 300.00051 * 20 18 16 24 24 C 1.46927 * 118.73997 * 306.09160 * 15 14 13 25 25 H 1.09006 * 109.58540 * 293.93294 * 24 15 14 26 26 C 1.52994 * 109.58617 * 173.64819 * 24 15 14 27 27 C 1.36092 * 107.10626 * 359.59850 * 6 5 4 28 28 O 1.34047 * 125.38173 * 269.97480 * 4 3 2 29 29 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47090 * 300.00346 * 1 2 3 31 31 H 1.08997 * 109.47098 * 60.00102 * 1 2 3 32 32 H 1.09000 * 109.47371 * 59.99823 * 3 2 1 33 33 H 1.08992 * 109.47319 * 300.00091 * 3 2 1 34 34 H 0.97003 * 119.99980 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.46222 * 61.41873 * 12 10 9 36 36 H 1.08997 * 109.45642 * 181.37632 * 12 10 9 37 37 H 1.09001 * 109.49839 * 58.58748 * 13 12 10 38 38 H 1.08991 * 109.49799 * 178.68591 * 13 12 10 39 39 H 1.08993 * 109.74295 * 295.11986 * 14 13 12 40 40 H 1.09001 * 109.66416 * 174.54897 * 14 13 12 41 41 H 0.96999 * 120.00127 * 5.83029 * 19 18 16 42 42 H 1.09007 * 109.47194 * 60.00333 * 26 24 15 43 43 H 1.09007 * 109.47097 * 179.97438 * 26 24 15 44 44 H 1.08993 * 109.47668 * 300.00010 * 26 24 15 45 45 H 1.08003 * 126.52180 * 180.19944 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2633 1.1326 -1.0586 6 6 5.5606 1.0251 -0.6625 7 6 6.7400 0.9326 -1.5421 8 8 7.8530 0.8454 -1.0597 9 7 6.5849 0.9443 -2.8808 10 6 7.7571 0.8529 -3.7549 11 1 8.5035 0.2046 -3.2959 12 6 8.3505 2.2482 -3.9623 13 6 7.2929 3.1681 -4.5766 14 6 6.8731 2.6131 -5.9462 15 7 6.4343 1.2217 -5.7720 16 6 5.2068 0.8155 -6.2231 17 1 4.6767 0.0270 -5.7097 18 6 4.6439 1.4173 -7.3402 19 7 5.4146 2.0125 -8.2257 20 14 2.7926 1.3824 -7.5867 21 1 2.4475 2.0896 -8.8460 22 1 2.1281 2.0569 -6.4426 23 1 2.3304 -0.0265 -7.6669 24 6 7.3402 0.2729 -5.1102 25 1 8.2229 0.1172 -5.7304 26 6 6.6205 -1.0604 -4.8980 27 6 5.5649 1.0251 0.6984 28 8 4.2859 1.1258 1.0939 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8899 34 1 5.6972 1.0141 -3.2657 35 1 8.6706 2.6531 -3.0023 36 1 9.2077 2.1822 -4.6323 37 1 6.4250 3.2149 -3.9188 38 1 7.7089 4.1676 -4.7025 39 1 7.7195 2.6462 -6.6321 40 1 6.0520 3.2077 -6.3469 41 1 6.3795 1.9583 -8.1432 42 1 6.3137 -1.4652 -5.8625 43 1 7.2943 -1.7629 -4.4074 44 1 5.7411 -0.9034 -4.2736 45 1 6.4322 0.9564 1.3384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994122679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:32 Heat of formation + Delta-G solvation = -34.869116 kcal Electronic energy + Delta-G solvation = -28592.843338 eV Core-core repulsion = 24613.103706 eV Total energy + Delta-G solvation = -3979.739632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.53860 -39.68674 -38.22681 -37.67485 -34.96698 -34.12674 -32.45996 -31.79761 -31.46632 -29.26502 -28.00709 -26.37547 -25.98585 -24.94391 -24.17306 -22.03530 -21.49673 -20.99334 -20.36806 -18.73079 -18.26113 -17.39748 -16.98413 -16.67343 -16.20927 -15.98666 -15.87891 -15.34124 -14.81391 -14.58193 -14.27565 -13.97281 -13.56974 -13.53344 -13.29590 -13.19664 -13.01917 -12.72300 -12.61982 -11.89780 -11.81107 -11.47299 -11.34794 -11.20178 -10.99015 -10.87555 -10.77666 -10.61012 -10.21588 -10.17332 -10.07178 -10.05221 -9.88553 -9.76220 -9.23531 -9.10738 -8.57467 -8.34452 -6.85813 -6.02247 -3.25214 0.99537 1.82951 2.34322 3.26155 3.45082 3.50068 3.52874 3.60739 3.70723 3.99634 4.55681 4.58600 4.78430 4.84335 4.99400 5.00335 5.09888 5.17212 5.33444 5.37498 5.39587 5.48843 5.52456 5.57941 5.64583 5.84653 5.91419 6.06764 6.17918 6.21146 6.37495 6.41375 6.51903 6.57369 6.62152 6.66173 6.83746 6.93479 7.02577 7.11184 7.21933 7.36397 7.98714 8.06342 8.49905 8.60726 9.12089 9.85945 10.30393 11.23946 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.004917 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.854516 B = 5693.262083 C = 7763.003135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.162 3.838 4 C 0.189 3.811 5 N -0.428 5.428 6 C -0.064 4.064 7 C 0.594 3.406 8 O -0.553 6.553 9 N -0.678 5.678 10 C 0.132 3.868 11 H 0.079 0.921 12 C -0.121 4.121 13 C -0.136 4.136 14 C 0.153 3.847 15 N -0.593 5.593 16 C -0.347 4.347 17 H 0.060 0.940 18 C -0.020 4.020 19 N -0.916 5.916 20 Si 1.062 2.938 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.161 3.839 25 H 0.039 0.961 26 C -0.134 4.134 27 C 0.013 3.987 28 O -0.193 6.193 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.419 0.581 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.017 0.983 40 H 0.077 0.923 41 H 0.269 0.731 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.055 0.945 45 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 -0.636 17.416 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.084 3.916 4 C -0.020 4.020 5 N -0.159 5.159 6 C -0.185 4.185 7 C 0.379 3.621 8 O -0.433 6.433 9 N -0.328 5.328 10 C 0.026 3.974 11 H 0.097 0.903 12 C -0.159 4.159 13 C -0.175 4.175 14 C 0.027 3.973 15 N -0.317 5.317 16 C -0.477 4.477 17 H 0.078 0.922 18 C -0.223 4.223 19 N -0.556 5.556 20 Si 0.892 3.108 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.220 1.220 24 C 0.054 3.946 25 H 0.056 0.944 26 C -0.191 4.191 27 C -0.061 4.061 28 O -0.078 6.078 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.257 0.743 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.556 -0.327 16.107 17.042 hybrid contribution 1.030 -0.329 1.506 1.854 sum -4.526 -0.655 17.614 18.198 Atomic orbital electron populations 1.22835 0.79346 1.03599 1.00575 1.87963 1.20796 1.25898 1.95601 1.20527 0.80787 0.86537 1.03726 1.25639 0.95379 1.02501 0.78509 1.70856 1.00963 1.14531 1.29578 1.22003 0.92327 1.11063 0.93114 1.16756 0.85776 0.77170 0.82418 1.90774 1.24318 1.52512 1.75651 1.45861 1.12316 1.70373 1.04282 1.21611 0.86884 0.96997 0.91923 0.90312 1.21772 0.98320 0.95697 1.00144 1.22104 0.98195 0.97283 0.99931 1.21039 0.98045 0.86068 0.92159 1.44238 1.15808 1.03241 1.68445 1.19915 0.93934 1.23802 1.10004 0.92190 1.25825 1.06218 0.99052 0.91211 1.70771 1.06384 1.45625 1.32784 0.83570 0.75473 0.75961 0.75812 1.21275 1.22014 1.22040 1.20716 0.93631 0.90287 0.89970 0.94384 1.21762 0.99799 0.95648 1.01933 1.25312 0.84761 1.00187 0.95799 1.84360 1.17060 1.68657 1.37755 0.88933 0.93602 0.93101 0.90006 0.88173 0.74262 0.92817 0.91743 0.92419 0.93257 0.96467 0.90496 0.92011 0.91725 0.94290 0.92580 0.75160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.29 10.69 -35.23 -0.38 -4.66 16 3 C 0.16 1.58 6.56 36.01 0.24 1.82 16 4 C 0.19 2.51 7.93 -13.08 -0.10 2.41 16 5 N -0.43 -6.92 11.06 -7.65 -0.08 -7.01 16 6 C -0.06 -1.02 6.99 -83.02 -0.58 -1.60 16 7 C 0.59 10.64 7.78 -12.52 -0.10 10.54 16 8 O -0.55 -10.63 16.55 5.27 0.09 -10.54 16 9 N -0.68 -12.56 3.45 -54.76 -0.19 -12.75 16 10 C 0.13 2.44 2.32 -67.81 -0.16 2.28 16 11 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 12 C -0.12 -2.16 5.58 -26.69 -0.15 -2.31 16 13 C -0.14 -2.61 5.95 -26.38 -0.16 -2.77 16 14 C 0.15 3.47 4.74 -3.48 -0.02 3.45 16 15 N -0.59 -13.92 2.46 -164.51 -0.41 -14.33 16 16 C -0.35 -9.08 8.43 -15.06 -0.13 -9.21 16 17 H 0.06 1.58 6.34 -52.49 -0.33 1.25 16 18 C -0.02 -0.56 4.70 -17.43 -0.08 -0.64 16 19 N -0.92 -26.70 12.51 55.49 0.69 -26.00 16 20 Si 1.06 24.76 29.98 -169.99 -5.10 19.66 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.16 3.28 3.20 -67.60 -0.22 3.06 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 C -0.13 -2.60 7.75 37.15 0.29 -2.31 16 27 C 0.01 0.17 11.95 29.96 0.36 0.53 16 28 O -0.19 -2.39 10.73 6.53 0.07 -2.32 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.42 8.42 7.50 -40.82 -0.31 8.12 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.17 7.53 -51.93 -0.39 0.77 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 40 H 0.08 1.97 6.50 -51.93 -0.34 1.63 16 41 H 0.27 7.91 6.73 -40.82 -0.27 7.64 16 42 H 0.06 1.35 7.64 -51.93 -0.40 0.95 16 43 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 44 H 0.06 1.13 6.38 -51.93 -0.33 0.79 16 45 H 0.23 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -32.09 367.16 -6.08 -38.16 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.62 Total: 7.67 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 0.31 Total: 6.59 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.02 Total: -60.09 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.22 Total: -17.53 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.10 Total: 19.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.09 -6.08 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994122679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.295 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds