Wall clock time and date at job start Tue Mar 31 2020 14:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99976 * 2 1 4 4 C 1.50702 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.29944 * 125.37089 * 90.31288 * 4 3 2 6 6 C 1.36067 * 108.46882 * 180.11487 * 5 4 3 7 7 C 1.47421 * 126.44515 * 179.85958 * 6 5 4 8 8 O 1.21613 * 120.00080 * 179.69215 * 7 6 5 9 9 N 1.34778 * 120.00122 * 359.68635 * 7 6 5 10 10 C 1.46503 * 120.00240 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.49501 * 34.94479 * 10 9 7 12 12 C 1.53037 * 109.52403 * 274.86029 * 10 9 7 13 13 C 1.53043 * 109.53810 * 301.39519 * 12 10 9 14 14 C 1.53625 * 109.24117 * 298.51263 * 13 12 10 15 15 N 1.46929 * 108.54171 * 54.85750 * 14 13 12 16 16 C 1.36938 * 120.63047 * 126.36939 * 15 14 13 17 17 H 1.08000 * 119.99801 * 210.87154 * 16 15 14 18 18 C 1.38811 * 120.00052 * 30.87101 * 16 15 14 19 19 N 1.31619 * 120.00079 * 23.57572 * 18 16 15 20 20 Si 1.86802 * 120.00114 * 203.57655 * 18 16 15 21 21 H 1.48496 * 109.47175 * 179.97438 * 20 18 16 22 22 H 1.48508 * 109.46715 * 59.99734 * 20 18 16 23 23 H 1.48492 * 109.46988 * 300.00051 * 20 18 16 24 24 C 1.46927 * 118.73997 * 306.09160 * 15 14 13 25 25 H 1.09006 * 109.58540 * 293.93294 * 24 15 14 26 26 C 1.52994 * 109.58617 * 173.64819 * 24 15 14 27 27 C 1.36092 * 107.10626 * 359.59850 * 6 5 4 28 28 O 1.34047 * 125.38173 * 269.97480 * 4 3 2 29 29 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47090 * 300.00346 * 1 2 3 31 31 H 1.08997 * 109.47098 * 60.00102 * 1 2 3 32 32 H 1.09000 * 109.47371 * 59.99823 * 3 2 1 33 33 H 1.08992 * 109.47319 * 300.00091 * 3 2 1 34 34 H 0.97003 * 119.99980 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.46222 * 61.41873 * 12 10 9 36 36 H 1.08997 * 109.45642 * 181.37632 * 12 10 9 37 37 H 1.09001 * 109.49839 * 58.58748 * 13 12 10 38 38 H 1.08991 * 109.49799 * 178.68591 * 13 12 10 39 39 H 1.08993 * 109.74295 * 295.11986 * 14 13 12 40 40 H 1.09001 * 109.66416 * 174.54897 * 14 13 12 41 41 H 0.96999 * 120.00127 * 5.83029 * 19 18 16 42 42 H 1.09007 * 109.47194 * 60.00333 * 26 24 15 43 43 H 1.09007 * 109.47097 * 179.97438 * 26 24 15 44 44 H 1.08993 * 109.47668 * 300.00010 * 26 24 15 45 45 H 1.08003 * 126.52180 * 180.19944 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2633 1.1326 -1.0586 6 6 5.5606 1.0251 -0.6625 7 6 6.7400 0.9326 -1.5421 8 8 7.8530 0.8454 -1.0597 9 7 6.5849 0.9443 -2.8808 10 6 7.7571 0.8529 -3.7549 11 1 8.5035 0.2046 -3.2959 12 6 8.3505 2.2482 -3.9623 13 6 7.2929 3.1681 -4.5766 14 6 6.8731 2.6131 -5.9462 15 7 6.4343 1.2217 -5.7720 16 6 5.2068 0.8155 -6.2231 17 1 4.6767 0.0270 -5.7097 18 6 4.6439 1.4173 -7.3402 19 7 5.4146 2.0125 -8.2257 20 14 2.7926 1.3824 -7.5867 21 1 2.4475 2.0896 -8.8460 22 1 2.1281 2.0569 -6.4426 23 1 2.3304 -0.0265 -7.6669 24 6 7.3402 0.2729 -5.1102 25 1 8.2229 0.1172 -5.7304 26 6 6.6205 -1.0604 -4.8980 27 6 5.5649 1.0251 0.6984 28 8 4.2859 1.1258 1.0939 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8899 34 1 5.6972 1.0141 -3.2657 35 1 8.6706 2.6531 -3.0023 36 1 9.2077 2.1822 -4.6323 37 1 6.4250 3.2149 -3.9188 38 1 7.7089 4.1676 -4.7025 39 1 7.7195 2.6462 -6.6321 40 1 6.0520 3.2077 -6.3469 41 1 6.3795 1.9583 -8.1432 42 1 6.3137 -1.4652 -5.8625 43 1 7.2943 -1.7629 -4.4074 44 1 5.7411 -0.9034 -4.2736 45 1 6.4322 0.9564 1.3384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994122679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:31 Heat of formation + Delta-G solvation = -58.636661 kcal Electronic energy + Delta-G solvation = -28593.873976 eV Core-core repulsion = 24613.103706 eV Total energy + Delta-G solvation = -3980.770270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.56623 -41.16622 -39.28427 -38.91737 -36.06737 -35.85728 -34.08765 -33.43188 -32.54278 -30.99293 -28.82887 -28.00032 -26.81650 -26.66088 -25.45639 -23.58087 -22.69552 -22.60985 -21.70085 -20.36049 -19.45517 -18.88878 -18.28974 -17.73371 -17.09239 -17.00785 -16.69893 -16.62257 -16.30320 -16.22150 -15.84595 -15.45510 -15.42001 -14.87147 -14.74121 -14.63763 -14.26928 -13.88945 -13.50706 -13.30989 -13.24417 -12.83582 -12.75574 -12.63108 -12.53308 -12.32081 -12.30660 -11.96693 -11.92812 -11.85469 -11.75421 -11.53698 -11.30616 -10.97830 -10.80948 -10.42272 -10.31809 -9.97834 -8.85072 -8.12822 -5.34459 -0.02862 0.72998 1.40539 1.60272 1.66960 1.85011 2.07808 2.17090 2.59607 2.68299 3.18881 3.28740 3.45899 3.63792 3.69268 3.91155 3.95490 4.07771 4.09438 4.22326 4.24511 4.40862 4.43712 4.52483 4.54312 4.56849 4.58627 4.62832 4.82113 4.83040 4.85876 4.90408 4.91231 5.00643 5.07013 5.21601 5.28043 5.35837 5.38130 5.55382 5.98607 6.00268 6.27367 6.48555 6.58026 7.06965 7.12451 7.84301 8.29201 9.10135 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.004917 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.854516 B = 5693.262083 C = 7763.003135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.159 3.841 4 C 0.192 3.808 5 N -0.466 5.466 6 C -0.104 4.104 7 C 0.597 3.403 8 O -0.569 6.569 9 N -0.683 5.683 10 C 0.139 3.861 11 H 0.088 0.912 12 C -0.114 4.114 13 C -0.122 4.122 14 C 0.160 3.840 15 N -0.604 5.604 16 C -0.336 4.336 17 H 0.057 0.943 18 C -0.073 4.073 19 N -0.946 5.946 20 Si 1.106 2.894 21 H -0.297 1.297 22 H -0.281 1.281 23 H -0.279 1.279 24 C 0.158 3.842 25 H 0.038 0.962 26 C -0.124 4.124 27 C 0.044 3.956 28 O -0.186 6.186 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.411 0.589 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.008 0.992 40 H 0.043 0.957 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 -0.773 19.967 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.335 6.335 3 C 0.082 3.918 4 C -0.018 4.018 5 N -0.198 5.198 6 C -0.224 4.224 7 C 0.383 3.617 8 O -0.450 6.450 9 N -0.332 5.332 10 C 0.033 3.967 11 H 0.106 0.894 12 C -0.152 4.152 13 C -0.161 4.161 14 C 0.034 3.966 15 N -0.329 5.329 16 C -0.466 4.466 17 H 0.075 0.925 18 C -0.269 4.269 19 N -0.589 5.589 20 Si 0.932 3.068 21 H -0.223 1.223 22 H -0.207 1.207 23 H -0.205 1.205 24 C 0.052 3.948 25 H 0.056 0.944 26 C -0.182 4.182 27 C -0.031 4.031 28 O -0.071 6.071 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.247 0.753 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -6.114 -0.479 18.692 19.672 hybrid contribution 1.208 -0.331 0.803 1.488 sum -4.906 -0.810 19.494 20.119 Atomic orbital electron populations 1.23042 0.77394 1.04466 1.01954 1.87903 1.22960 1.26703 1.95901 1.20818 0.78656 0.86532 1.05746 1.26343 0.96604 1.00823 0.78017 1.70803 1.01516 1.16204 1.31240 1.21854 0.91869 1.14522 0.94144 1.16950 0.86296 0.76251 0.82154 1.90751 1.25090 1.53382 1.75790 1.45846 1.11626 1.70950 1.04738 1.21465 0.87100 0.97400 0.90705 0.89411 1.21727 0.98024 0.94884 1.00609 1.21929 0.98335 0.98495 0.97342 1.20875 0.96336 0.85559 0.93813 1.44386 1.15868 1.04214 1.68443 1.20075 0.94796 1.22771 1.08975 0.92538 1.26972 1.09221 0.99385 0.91365 1.70885 1.05582 1.48098 1.34303 0.82962 0.71687 0.76611 0.75545 1.22294 1.20681 1.20515 1.20855 0.93034 0.90227 0.90727 0.94415 1.21655 0.99941 0.95675 1.00883 1.25912 0.85515 0.96701 0.94948 1.84409 1.16965 1.68290 1.37397 0.88423 0.91270 0.92647 0.86376 0.87700 0.75269 0.91954 0.90583 0.93515 0.91284 0.97422 0.93875 0.93577 0.93630 0.91579 0.93512 0.71815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.56 10.69 -148.98 -1.59 -10.15 16 3 C 0.16 2.78 6.56 71.24 0.47 3.25 16 4 C 0.19 4.79 7.93 88.39 0.70 5.49 16 5 N -0.47 -14.74 11.06 -293.03 -3.24 -17.98 16 6 C -0.10 -3.20 6.99 40.41 0.28 -2.91 16 7 C 0.60 20.74 7.78 86.66 0.67 21.42 16 8 O -0.57 -20.93 16.55 -4.07 -0.07 -20.99 16 9 N -0.68 -24.88 3.45 -445.42 -1.54 -26.42 16 10 C 0.14 5.00 2.32 45.07 0.10 5.10 16 11 H 0.09 3.03 7.58 -2.39 -0.02 3.02 16 12 C -0.11 -3.91 5.58 30.62 0.17 -3.73 16 13 C -0.12 -4.62 5.95 30.82 0.18 -4.43 16 14 C 0.16 7.40 4.74 86.51 0.41 7.81 16 15 N -0.60 -28.77 2.46 -674.40 -1.66 -30.43 16 16 C -0.34 -17.84 8.43 84.03 0.71 -17.14 16 17 H 0.06 3.01 6.34 -2.91 -0.02 2.99 16 18 C -0.07 -4.04 4.70 84.86 0.40 -3.64 16 19 N -0.95 -56.78 12.51 21.65 0.27 -56.51 16 20 Si 1.11 50.62 29.98 68.60 2.06 52.67 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 C 0.16 6.38 3.20 44.97 0.14 6.52 16 25 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 26 C -0.12 -4.77 7.75 71.98 0.56 -4.21 16 27 C 0.04 0.99 11.95 67.32 0.80 1.79 16 28 O -0.19 -4.14 10.73 0.44 0.00 -4.14 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.49 8.14 -2.38 -0.02 0.48 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.12 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.41 16.57 7.50 -92.71 -0.70 15.88 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.05 1.87 7.53 -2.39 -0.02 1.85 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 39 H 0.01 0.37 7.84 -2.39 -0.02 0.35 16 40 H 0.04 2.28 6.50 -2.39 -0.02 2.26 16 41 H 0.25 15.53 6.73 -92.71 -0.62 14.91 16 42 H 0.04 1.90 7.64 -2.38 -0.02 1.88 16 43 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.05 1.87 6.38 -2.39 -0.02 1.85 16 45 H 0.27 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -70.45 367.16 1.55 -68.90 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.46 Total: 28.16 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.86 Total: 16.88 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -6.17 Total: -131.34 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.65 Total: -35.28 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.06 Total: 52.67 kcal Total: -70.45 1.55 -68.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994122679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.262 kcal (2) G-P(sol) polarization free energy of solvation -70.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds