Wall clock time and date at job start Tue Mar 31 2020 14:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99632 * 2 1 4 4 C 1.50704 * 109.46821 * 180.02562 * 3 2 1 5 5 N 1.29933 * 125.37781 * 90.00420 * 4 3 2 6 6 C 1.36062 * 108.47820 * 179.97438 * 5 4 3 7 7 C 1.47420 * 126.45270 * 179.97438 * 6 5 4 8 8 O 1.21607 * 120.00172 * 180.02562 * 7 6 5 9 9 N 1.34783 * 119.99854 * 0.02562 * 7 6 5 10 10 C 1.46491 * 120.00019 * 179.97438 * 9 7 6 11 11 H 1.09011 * 109.52705 * 35.07925 * 10 9 7 12 12 C 1.53041 * 109.49838 * 275.00037 * 10 9 7 13 13 C 1.53042 * 109.53755 * 178.68274 * 12 10 9 14 14 C 1.53197 * 109.31056 * 61.36512 * 13 12 10 15 15 N 1.46924 * 108.77415 * 305.36136 * 14 13 12 16 16 C 1.36943 * 120.62995 * 233.58592 * 15 14 13 17 17 H 1.07999 * 119.99741 * 150.98933 * 16 15 14 18 18 C 1.38811 * 119.99970 * 330.98603 * 16 15 14 19 19 N 1.31620 * 120.00262 * 344.98836 * 18 16 15 20 20 Si 1.86799 * 119.99624 * 164.98484 * 18 16 15 21 21 H 1.48500 * 109.47334 * 270.00029 * 20 18 16 22 22 H 1.48497 * 109.47232 * 30.00090 * 20 18 16 23 23 H 1.48506 * 109.46855 * 150.00463 * 20 18 16 24 24 C 1.46929 * 118.73776 * 53.86514 * 15 14 13 25 25 H 1.09001 * 109.58656 * 65.92557 * 24 15 14 26 26 C 1.53003 * 109.58379 * 186.34982 * 24 15 14 27 27 C 1.36097 * 107.10328 * 0.25680 * 6 5 4 28 28 O 1.34045 * 125.37889 * 269.95580 * 4 3 2 29 29 H 1.09005 * 109.47276 * 299.99836 * 1 2 3 30 30 H 1.09000 * 109.47827 * 59.99740 * 1 2 3 31 31 H 1.08999 * 109.46970 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47343 * 60.00164 * 3 2 1 33 33 H 1.09004 * 109.47059 * 299.99962 * 3 2 1 34 34 H 0.96999 * 119.99336 * 359.97438 * 9 7 6 35 35 H 1.08990 * 109.46171 * 58.66589 * 12 10 9 36 36 H 1.08995 * 109.44846 * 298.69303 * 12 10 9 37 37 H 1.08998 * 109.49938 * 301.41676 * 13 12 10 38 38 H 1.09004 * 109.52569 * 181.32617 * 13 12 10 39 39 H 1.09003 * 109.58227 * 185.57834 * 14 13 12 40 40 H 1.08999 * 109.70422 * 65.22304 * 14 13 12 41 41 H 0.96995 * 120.00006 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.47317 * 59.99934 * 26 24 15 43 43 H 1.09002 * 109.46620 * 179.97438 * 26 24 15 44 44 H 1.08999 * 109.47059 * 299.99874 * 26 24 15 45 45 H 1.07995 * 126.52815 * 179.74382 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2620 1.1274 -1.0604 6 6 5.5600 1.0251 -0.6654 7 6 6.7387 0.9316 -1.5458 8 8 7.8519 0.8435 -1.0643 9 7 6.5825 0.9438 -2.8845 10 6 7.7538 0.8515 -3.7595 11 1 8.4994 0.2005 -3.3027 12 6 8.3500 2.2461 -3.9638 13 6 9.5930 2.1464 -4.8510 14 6 9.1947 1.5856 -6.2199 15 7 8.4907 0.3112 -6.0221 16 6 8.9038 -0.8220 -6.6704 17 1 8.7404 -1.7908 -6.2219 18 6 9.5326 -0.7256 -7.9042 19 7 9.4732 0.3980 -8.5872 20 14 10.4632 -2.1905 -8.5952 21 1 11.8782 -2.1338 -8.1481 22 1 9.8402 -3.4474 -8.1079 23 1 10.4111 -2.1549 -10.0789 24 6 7.3313 0.2772 -5.1202 25 1 6.5246 0.8787 -5.5392 26 6 6.8599 -1.1679 -4.9452 27 6 5.5649 1.0189 0.6956 28 8 4.2867 1.1259 1.0920 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 5.6945 1.0138 -3.2685 35 1 8.6265 2.6680 -2.9976 36 1 7.6123 2.8895 -4.4432 37 1 10.3211 1.4832 -4.3840 38 1 10.0310 3.1366 -4.9771 39 1 10.0887 1.4197 -6.8209 40 1 8.5377 2.2908 -6.7290 41 1 9.9128 0.4654 -9.4491 42 1 7.6671 -1.7644 -4.5203 43 1 6.0002 -1.1909 -4.2755 44 1 6.5769 -1.5776 -5.9148 45 1 6.4321 0.9451 1.3349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994122692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:41 Heat of formation + Delta-G solvation = -58.598687 kcal Electronic energy + Delta-G solvation = -27640.839859 eV Core-core repulsion = 23660.071236 eV Total energy + Delta-G solvation = -3980.768623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.56214 -41.02271 -39.22559 -38.89384 -36.10506 -35.86744 -34.23690 -33.42309 -32.55431 -30.95342 -28.81018 -27.96323 -26.93133 -26.63443 -25.47205 -23.57827 -22.59681 -22.30557 -21.57268 -21.07430 -19.35934 -18.28347 -18.26974 -17.65260 -17.35116 -17.00915 -16.79160 -16.67050 -16.49393 -15.99614 -15.66640 -15.60132 -15.25024 -14.88243 -14.72563 -14.51262 -14.27847 -13.86858 -13.36762 -13.29693 -13.25377 -12.83552 -12.73353 -12.61674 -12.55043 -12.39418 -12.29672 -12.03854 -11.98550 -11.85587 -11.78640 -11.67708 -11.33980 -11.11131 -10.78069 -10.52635 -10.32198 -10.01489 -8.66377 -7.85105 -5.31866 -0.02491 0.72479 1.42093 1.47375 1.49367 1.57119 1.97013 2.16170 2.51432 2.59640 3.19582 3.30034 3.55163 3.69267 3.70258 3.88161 4.01066 4.12733 4.19717 4.24581 4.34822 4.41335 4.49035 4.54611 4.58796 4.59896 4.64494 4.72692 4.86581 4.88968 4.90102 4.93500 5.02574 5.12904 5.18507 5.25646 5.39982 5.44708 5.57785 5.70568 5.77156 6.03378 6.23018 6.41953 6.53931 7.06447 7.16842 7.85810 8.37798 9.21734 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.002754 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.471408 B =10163.808535 C =10914.625992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.159 3.841 4 C 0.193 3.807 5 N -0.459 5.459 6 C -0.099 4.099 7 C 0.601 3.399 8 O -0.568 6.568 9 N -0.693 5.693 10 C 0.146 3.854 11 H 0.065 0.935 12 C -0.109 4.109 13 C -0.128 4.128 14 C 0.174 3.826 15 N -0.599 5.599 16 C -0.254 4.254 17 H 0.073 0.927 18 C -0.049 4.049 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.288 1.288 22 H -0.269 1.269 23 H -0.295 1.295 24 C 0.166 3.834 25 H 0.030 0.970 26 C -0.127 4.127 27 C 0.042 3.958 28 O -0.187 6.187 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.413 0.587 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.003 0.997 41 H 0.249 0.751 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.585 4.312 20.453 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C 0.082 3.918 4 C -0.017 4.017 5 N -0.191 5.191 6 C -0.219 4.219 7 C 0.387 3.613 8 O -0.448 6.448 9 N -0.342 5.342 10 C 0.040 3.960 11 H 0.084 0.916 12 C -0.148 4.148 13 C -0.168 4.168 14 C 0.049 3.951 15 N -0.323 5.323 16 C -0.384 4.384 17 H 0.090 0.910 18 C -0.244 4.244 19 N -0.580 5.580 20 Si 0.792 3.208 21 H -0.215 1.215 22 H -0.194 1.194 23 H -0.222 1.222 24 C 0.059 3.941 25 H 0.048 0.952 26 C -0.185 4.185 27 C -0.032 4.032 28 O -0.072 6.072 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.249 0.751 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -16.907 4.100 19.996 26.504 hybrid contribution 0.586 -0.442 -0.461 0.867 sum -16.321 3.659 19.534 25.717 Atomic orbital electron populations 1.23028 0.77408 1.04373 1.01997 1.87912 1.22908 1.26815 1.95916 1.20851 0.78449 0.86477 1.05973 1.26401 0.96650 1.00606 0.78008 1.70703 1.00965 1.16447 1.31013 1.21694 0.91773 1.14560 0.93857 1.16963 0.86292 0.75917 0.82119 1.90801 1.25666 1.52534 1.75837 1.45782 1.11120 1.72249 1.05026 1.21515 0.86920 0.97172 0.90418 0.91649 1.21691 0.97671 0.96179 0.99239 1.22015 0.97033 1.00660 0.97049 1.20676 0.96019 0.85546 0.92886 1.44295 1.30580 1.06923 1.50527 1.19471 1.33282 0.87445 0.98179 0.90986 1.25775 1.03055 0.99400 0.96178 1.70163 1.46830 1.27592 1.13426 0.85331 0.78787 0.79925 0.76806 1.21488 1.19384 1.22179 1.20768 0.89252 0.95854 0.88266 0.95194 1.21715 1.00067 0.95621 1.01071 1.25889 0.85533 0.96624 0.95168 1.84424 1.16962 1.68209 1.37598 0.91570 0.92243 0.88654 0.86729 0.86918 0.75109 0.92269 0.91823 0.93383 0.90686 0.92362 0.97884 0.94181 0.93724 0.91465 0.93055 0.72293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -6.49 10.69 -148.98 -1.59 -8.08 16 3 C 0.16 1.87 6.56 71.24 0.47 2.34 16 4 C 0.19 3.79 7.93 88.39 0.70 4.49 16 5 N -0.46 -11.43 11.06 -293.04 -3.24 -14.67 16 6 C -0.10 -2.60 6.99 40.41 0.28 -2.32 16 7 C 0.60 19.19 7.78 86.66 0.67 19.86 16 8 O -0.57 -21.13 16.55 -4.05 -0.07 -21.19 16 9 N -0.69 -22.01 4.60 -444.74 -2.04 -24.06 16 10 C 0.15 5.44 2.01 45.22 0.09 5.53 16 11 H 0.07 2.78 7.58 -2.38 -0.02 2.76 16 12 C -0.11 -3.94 5.46 30.62 0.17 -3.77 16 13 C -0.13 -5.08 6.08 30.67 0.19 -4.90 16 14 C 0.17 8.51 5.28 86.36 0.46 8.97 16 15 N -0.60 -30.08 2.99 -674.40 -2.01 -32.09 16 16 C -0.25 -13.82 8.59 84.03 0.72 -13.10 16 17 H 0.07 3.84 6.22 -2.91 -0.02 3.82 16 18 C -0.05 -2.72 4.96 84.86 0.42 -2.30 16 19 N -0.93 -55.10 11.14 21.65 0.24 -54.86 16 20 Si 0.96 45.31 29.58 68.60 2.03 47.34 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 24 C 0.17 6.87 3.05 45.12 0.14 7.01 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 C -0.13 -4.91 7.83 71.98 0.56 -4.35 16 27 C 0.04 0.84 11.95 67.32 0.80 1.64 16 28 O -0.19 -3.51 10.73 0.41 0.00 -3.50 16 29 H 0.07 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.41 11.97 8.33 -92.71 -0.77 11.19 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 39 H 0.06 3.21 6.06 -2.39 -0.01 3.20 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 42 H 0.04 1.79 7.44 -2.39 -0.02 1.77 16 43 H 0.07 2.19 7.82 -2.39 -0.02 2.17 16 44 H 0.05 2.10 7.62 -2.39 -0.02 2.08 16 45 H 0.26 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -71.77 371.14 0.48 -71.29 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.24 Total: 19.27 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 6.92 Total: 20.55 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -7.06 Total: -125.67 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.65 Total: -32.78 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.77 0.48 -71.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994122692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.692 kcal (2) G-P(sol) polarization free energy of solvation -71.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds