Wall clock time and date at job start Tue Mar 31 2020 14:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00015 * 2 1 4 4 C 1.50702 * 109.46948 * 180.02562 * 3 2 1 5 5 N 1.30015 * 127.33404 * 269.95384 * 4 3 2 6 6 O 1.20663 * 112.29767 * 180.02562 * 5 4 3 7 7 C 1.33493 * 113.15802 * 359.71999 * 6 5 4 8 8 C 1.37356 * 106.34180 * 0.44736 * 7 6 5 9 9 C 1.47395 * 128.56338 * 179.85527 * 8 7 6 10 10 O 1.21610 * 120.00017 * 179.67877 * 9 8 7 11 11 N 1.34775 * 120.00387 * 359.67778 * 9 8 7 12 12 C 1.46499 * 120.00448 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.49141 * 34.93947 * 12 11 9 14 14 C 1.53103 * 109.51655 * 274.87601 * 12 11 9 15 15 C 1.53044 * 109.50089 * 178.68288 * 14 12 11 16 16 C 1.53189 * 109.33817 * 61.34704 * 15 14 12 17 17 N 1.46921 * 108.77908 * 305.34555 * 16 15 14 18 18 C 1.36932 * 120.63574 * 233.58950 * 17 16 15 19 19 H 1.08002 * 120.00558 * 150.16603 * 18 17 16 20 20 C 1.38810 * 119.99894 * 330.17096 * 18 17 16 21 21 N 1.31626 * 120.00005 * 344.50091 * 20 18 17 22 22 Si 1.86797 * 120.00232 * 164.50702 * 20 18 17 23 23 H 1.48497 * 109.47599 * 59.99577 * 22 20 18 24 24 H 1.48499 * 109.47262 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46959 * 299.99416 * 22 20 18 26 26 C 1.46934 * 118.73684 * 53.60994 * 17 16 15 27 27 H 1.09004 * 109.58283 * 66.17749 * 26 17 16 28 28 C 1.52998 * 109.58562 * 186.46110 * 26 17 16 29 29 H 1.08996 * 109.47516 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47319 * 300.00634 * 1 2 3 31 31 H 1.08998 * 109.47286 * 59.99920 * 1 2 3 32 32 H 1.08997 * 109.47365 * 59.99967 * 3 2 1 33 33 H 1.09000 * 109.46954 * 299.99446 * 3 2 1 34 34 H 1.07999 * 126.82351 * 180.30587 * 7 6 5 35 35 H 0.97005 * 119.99829 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.50559 * 58.65998 * 14 12 11 37 37 H 1.09000 * 109.45163 * 298.67313 * 14 12 11 38 38 H 1.08999 * 109.49674 * 301.37609 * 15 14 12 39 39 H 1.08999 * 109.49431 * 181.31480 * 15 14 12 40 40 H 1.08998 * 109.58752 * 65.13749 * 16 15 14 41 41 H 1.09002 * 109.58350 * 185.41982 * 16 15 14 42 42 H 0.96997 * 119.99978 * 179.97438 * 21 20 18 43 43 H 1.08995 * 109.47145 * 60.00437 * 28 26 17 44 44 H 1.09005 * 109.46861 * 179.97438 * 28 26 17 45 45 H 1.08992 * 109.47098 * 299.99726 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2990 1.1248 1.0328 6 8 5.4606 1.0330 0.7193 7 6 5.6475 1.0118 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0428 1.1437 -2.6000 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0673 -3.5384 12 6 4.6508 1.0944 -4.9591 13 1 3.7940 1.7519 -5.1067 14 6 4.2952 -0.3203 -5.4243 15 6 3.8913 -0.2864 -6.9001 16 6 5.0714 0.2162 -7.7376 17 7 5.5125 1.5119 -7.2036 18 6 5.6173 2.6047 -8.0220 19 1 5.4631 3.5959 -7.6219 20 6 5.9217 2.4386 -9.3661 21 7 6.4050 1.2916 -9.7946 22 14 5.6457 3.8426 -10.5668 23 1 6.4622 5.0130 -10.1561 24 1 6.0471 3.4138 -11.9307 25 1 4.2088 4.2175 -10.5682 26 6 5.8395 1.6127 -5.7747 27 1 6.7216 1.0100 -5.5583 28 6 6.1153 3.0736 -5.4135 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 6.5912 0.9312 -1.1214 35 1 5.9374 0.9937 -3.2731 36 1 3.4651 -0.7011 -4.8293 37 1 5.1602 -0.9716 -5.2995 38 1 3.0416 0.3840 -7.0294 39 1 3.6157 -1.2897 -7.2249 40 1 5.8908 -0.5004 -7.6813 41 1 4.7592 0.3335 -8.7753 42 1 6.6173 1.1754 -10.7338 43 1 5.2305 3.6736 -5.6258 44 1 6.3572 3.1462 -4.3531 45 1 6.9542 3.4417 -6.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994215195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:45 Heat of formation + Delta-G solvation = 3.865057 kcal Electronic energy + Delta-G solvation = -28128.992424 eV Core-core repulsion = 24150.932432 eV Total energy + Delta-G solvation = -3978.059992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.18817 -39.76306 -38.13300 -37.60828 -34.43973 -34.19382 -32.82422 -32.24293 -31.55255 -29.31102 -28.48997 -26.45294 -25.93885 -25.15009 -24.59182 -22.13054 -21.56689 -20.74359 -20.35799 -19.56309 -18.31288 -18.02720 -16.93227 -16.48532 -16.46427 -16.00265 -15.73893 -15.35134 -15.00613 -14.73126 -14.39374 -13.87919 -13.80770 -13.60728 -13.34972 -12.84564 -12.77373 -12.61063 -12.57105 -11.81338 -11.76907 -11.64606 -11.58461 -11.16984 -10.95236 -10.79042 -10.63550 -10.42131 -10.36018 -10.23738 -10.10362 -10.08962 -9.97100 -9.88706 -9.69875 -9.43182 -8.77383 -8.49117 -6.71330 -5.83499 -3.28588 0.87025 1.40824 2.68166 3.13738 3.23361 3.35775 3.41936 3.43476 3.51742 3.89767 4.19472 4.45593 4.60909 4.81080 4.96690 5.03054 5.14997 5.21769 5.24626 5.34120 5.36127 5.46444 5.48061 5.53869 5.60295 5.73863 5.91820 6.01806 6.15677 6.27419 6.34625 6.47931 6.55472 6.65039 6.71037 6.80039 6.83861 6.93159 7.00674 7.35631 7.58004 7.62992 7.77734 7.90268 8.25181 8.40994 9.15969 9.78411 10.34847 11.25183 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002991 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.959290 B = 9360.457422 C = 9858.830225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.142 3.858 4 C 0.063 3.937 5 N -0.341 5.341 6 O 0.105 5.895 7 C -0.011 4.011 8 C -0.231 4.231 9 C 0.591 3.409 10 O -0.526 6.526 11 N -0.709 5.709 12 C 0.132 3.868 13 H 0.089 0.911 14 C -0.117 4.117 15 C -0.140 4.140 16 C 0.170 3.830 17 N -0.581 5.581 18 C -0.255 4.255 19 H 0.070 0.930 20 C 0.006 3.994 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.168 3.832 27 H 0.028 0.972 28 C -0.137 4.137 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.229 0.771 35 H 0.394 0.606 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.019 0.981 41 H 0.087 0.913 42 H 0.255 0.745 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 -1.714 18.217 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.065 3.935 4 C -0.100 4.100 5 N -0.046 5.046 6 O 0.041 5.959 7 C -0.093 4.093 8 C -0.239 4.239 9 C 0.376 3.624 10 O -0.403 6.403 11 N -0.359 5.359 12 C 0.027 3.973 13 H 0.107 0.893 14 C -0.156 4.156 15 C -0.180 4.180 16 C 0.045 3.955 17 N -0.304 5.304 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.060 3.940 27 H 0.046 0.954 28 C -0.194 4.194 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.245 0.755 35 H 0.228 0.772 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.475 -1.828 19.067 19.671 hybrid contribution 0.204 0.727 -1.398 1.589 sum -4.271 -1.101 17.669 18.211 Atomic orbital electron populations 1.22765 0.80058 1.03101 1.00296 1.87904 1.20317 1.26293 1.95526 1.20566 0.84177 0.86191 1.02564 1.24360 0.97437 1.01351 0.86807 1.73666 0.89543 1.17827 1.23570 1.84580 1.21606 1.66384 1.23304 1.26449 1.00431 0.98656 0.83778 1.22488 0.92647 1.12719 0.96001 1.16793 0.85807 0.77075 0.82748 1.90793 1.18325 1.49467 1.81728 1.45978 1.09012 1.73800 1.07141 1.21889 1.00874 0.97665 0.76896 0.89329 1.21780 1.00334 0.96110 0.97379 1.22185 1.01204 1.00047 0.94557 1.20823 0.91511 0.85647 0.97563 1.44015 1.76381 1.08205 1.01830 1.19108 1.42027 0.87176 0.90162 0.91259 1.25085 0.98643 0.96966 0.98575 1.70016 1.45174 1.24445 1.14882 0.86383 0.78232 0.81813 0.80397 1.20860 1.21641 1.20945 1.20560 0.92241 0.94779 0.86429 0.95444 1.21823 1.02437 0.96733 0.98452 0.89319 0.94020 0.93314 0.91482 0.89197 0.75453 0.77218 0.93044 0.92688 0.92482 0.92939 0.96242 0.89475 0.93546 0.92649 0.94367 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.10 10.69 -35.23 -0.38 -5.48 16 3 C 0.14 1.74 6.20 36.01 0.22 1.97 16 4 C 0.06 0.83 7.21 -79.76 -0.58 0.25 16 5 N -0.34 -4.28 12.01 34.78 0.42 -3.86 16 6 O 0.10 1.07 11.06 18.65 0.21 1.28 16 7 C -0.01 -0.09 11.85 30.41 0.36 0.27 16 8 C -0.23 -2.82 6.47 -102.89 -0.67 -3.48 16 9 C 0.59 8.66 7.78 -12.53 -0.10 8.56 16 10 O -0.53 -9.58 15.36 5.27 0.08 -9.50 16 11 N -0.71 -9.51 4.59 -54.74 -0.25 -9.76 16 12 C 0.13 2.25 2.00 -67.78 -0.14 2.12 16 13 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 14 C -0.12 -2.03 5.47 -26.66 -0.15 -2.18 16 15 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 16 C 0.17 3.89 5.28 -3.72 -0.02 3.87 16 17 N -0.58 -13.64 2.99 -164.78 -0.49 -14.14 16 18 C -0.26 -6.60 8.57 -15.06 -0.13 -6.73 16 19 H 0.07 1.75 6.24 -52.49 -0.33 1.42 16 20 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 21 N -0.90 -25.21 11.23 55.49 0.62 -24.58 16 22 Si 0.90 21.08 29.58 -169.99 -5.03 16.06 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.17 3.18 3.03 -67.60 -0.20 2.97 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 C -0.14 -2.38 7.84 37.16 0.29 -2.09 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.14 7.11 -51.93 -0.37 0.78 16 34 H 0.23 0.79 7.68 -52.49 -0.40 0.39 16 35 H 0.39 3.96 7.79 -40.82 -0.32 3.65 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 2.25 6.15 -51.93 -0.32 1.93 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.05 1.02 7.43 -51.93 -0.39 0.64 16 44 H 0.04 0.53 7.81 -51.93 -0.41 0.12 16 45 H 0.06 1.23 7.63 -51.93 -0.40 0.84 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -32.35 367.69 -6.19 -38.54 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.68 Total: 1.70 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -0.23 Total: 4.21 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.30 Total: -52.34 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.09 Total: -13.71 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.35 -6.19 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994215195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.409 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds