Wall clock time and date at job start Tue Mar 31 2020 14:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00015 * 2 1 4 4 C 1.50702 * 109.46948 * 180.02562 * 3 2 1 5 5 N 1.30015 * 127.33404 * 269.95384 * 4 3 2 6 6 O 1.20663 * 112.29767 * 180.02562 * 5 4 3 7 7 C 1.33493 * 113.15802 * 359.71999 * 6 5 4 8 8 C 1.37356 * 106.34180 * 0.44736 * 7 6 5 9 9 C 1.47395 * 128.56338 * 179.85527 * 8 7 6 10 10 O 1.21610 * 120.00017 * 179.67877 * 9 8 7 11 11 N 1.34775 * 120.00387 * 359.67778 * 9 8 7 12 12 C 1.46499 * 120.00448 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.49141 * 34.93947 * 12 11 9 14 14 C 1.53103 * 109.51655 * 274.87601 * 12 11 9 15 15 C 1.53044 * 109.50089 * 178.68288 * 14 12 11 16 16 C 1.53189 * 109.33817 * 61.34704 * 15 14 12 17 17 N 1.46921 * 108.77908 * 305.34555 * 16 15 14 18 18 C 1.36932 * 120.63574 * 233.58950 * 17 16 15 19 19 H 1.08002 * 120.00558 * 150.16603 * 18 17 16 20 20 C 1.38810 * 119.99894 * 330.17096 * 18 17 16 21 21 N 1.31626 * 120.00005 * 344.50091 * 20 18 17 22 22 Si 1.86797 * 120.00232 * 164.50702 * 20 18 17 23 23 H 1.48497 * 109.47599 * 59.99577 * 22 20 18 24 24 H 1.48499 * 109.47262 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46959 * 299.99416 * 22 20 18 26 26 C 1.46934 * 118.73684 * 53.60994 * 17 16 15 27 27 H 1.09004 * 109.58283 * 66.17749 * 26 17 16 28 28 C 1.52998 * 109.58562 * 186.46110 * 26 17 16 29 29 H 1.08996 * 109.47516 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47319 * 300.00634 * 1 2 3 31 31 H 1.08998 * 109.47286 * 59.99920 * 1 2 3 32 32 H 1.08997 * 109.47365 * 59.99967 * 3 2 1 33 33 H 1.09000 * 109.46954 * 299.99446 * 3 2 1 34 34 H 1.07999 * 126.82351 * 180.30587 * 7 6 5 35 35 H 0.97005 * 119.99829 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.50559 * 58.65998 * 14 12 11 37 37 H 1.09000 * 109.45163 * 298.67313 * 14 12 11 38 38 H 1.08999 * 109.49674 * 301.37609 * 15 14 12 39 39 H 1.08999 * 109.49431 * 181.31480 * 15 14 12 40 40 H 1.08998 * 109.58752 * 65.13749 * 16 15 14 41 41 H 1.09002 * 109.58350 * 185.41982 * 16 15 14 42 42 H 0.96997 * 119.99978 * 179.97438 * 21 20 18 43 43 H 1.08995 * 109.47145 * 60.00437 * 28 26 17 44 44 H 1.09005 * 109.46861 * 179.97438 * 28 26 17 45 45 H 1.08992 * 109.47098 * 299.99726 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2990 1.1248 1.0328 6 8 5.4606 1.0330 0.7193 7 6 5.6475 1.0118 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0428 1.1437 -2.6000 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0673 -3.5384 12 6 4.6508 1.0944 -4.9591 13 1 3.7940 1.7519 -5.1067 14 6 4.2952 -0.3203 -5.4243 15 6 3.8913 -0.2864 -6.9001 16 6 5.0714 0.2162 -7.7376 17 7 5.5125 1.5119 -7.2036 18 6 5.6173 2.6047 -8.0220 19 1 5.4631 3.5959 -7.6219 20 6 5.9217 2.4386 -9.3661 21 7 6.4050 1.2916 -9.7946 22 14 5.6457 3.8426 -10.5668 23 1 6.4622 5.0130 -10.1561 24 1 6.0471 3.4138 -11.9307 25 1 4.2088 4.2175 -10.5682 26 6 5.8395 1.6127 -5.7747 27 1 6.7216 1.0100 -5.5583 28 6 6.1153 3.0736 -5.4135 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 6.5912 0.9312 -1.1214 35 1 5.9374 0.9937 -3.2731 36 1 3.4651 -0.7011 -4.8293 37 1 5.1602 -0.9716 -5.2995 38 1 3.0416 0.3840 -7.0294 39 1 3.6157 -1.2897 -7.2249 40 1 5.8908 -0.5004 -7.6813 41 1 4.7592 0.3335 -8.7753 42 1 6.6173 1.1754 -10.7338 43 1 5.2305 3.6736 -5.6258 44 1 6.3572 3.1462 -4.3531 45 1 6.9542 3.4417 -6.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994215195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:44 Heat of formation + Delta-G solvation = -18.763505 kcal Electronic energy + Delta-G solvation = -28129.973673 eV Core-core repulsion = 24150.932432 eV Total energy + Delta-G solvation = -3979.041240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.06217 -41.02790 -39.25831 -38.88716 -35.92894 -35.10204 -34.33733 -33.54661 -32.97665 -30.88540 -29.37631 -27.94164 -26.94362 -26.74177 -25.74900 -23.64744 -22.46950 -22.27891 -21.51185 -21.10314 -19.33999 -18.89960 -18.28037 -17.85257 -17.35481 -17.31119 -16.85649 -16.63829 -16.29780 -15.97762 -15.65477 -15.52925 -15.26945 -14.96816 -14.54519 -14.49035 -14.26521 -13.60824 -13.38319 -13.32479 -13.23079 -12.77198 -12.69850 -12.56907 -12.54937 -12.49376 -12.36165 -12.01338 -11.81244 -11.76797 -11.62433 -11.30855 -11.24648 -11.07241 -10.83518 -10.76006 -10.50113 -10.03400 -8.62426 -7.83965 -5.29941 0.06796 0.50567 1.48346 1.51326 1.56663 1.82229 2.11463 2.22162 2.54703 2.66283 3.04568 3.32048 3.36655 3.64162 3.74958 3.87219 3.97104 4.06294 4.14725 4.23210 4.26343 4.39185 4.45181 4.50371 4.53937 4.62994 4.64981 4.67028 4.78705 4.81158 4.90312 4.96227 5.06646 5.15206 5.22857 5.30400 5.47676 5.50968 5.60819 5.73058 5.78773 6.00866 6.43996 6.52201 7.09801 7.17000 7.20174 7.89191 8.40374 9.22843 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002991 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.959290 B = 9360.457422 C = 9858.830225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.141 3.859 4 C 0.043 3.957 5 N -0.357 5.357 6 O 0.113 5.887 7 C 0.035 3.965 8 C -0.265 4.265 9 C 0.596 3.404 10 O -0.569 6.569 11 N -0.695 5.695 12 C 0.149 3.851 13 H 0.060 0.940 14 C -0.110 4.110 15 C -0.130 4.130 16 C 0.177 3.823 17 N -0.600 5.600 18 C -0.254 4.254 19 H 0.072 0.928 20 C -0.046 4.046 21 N -0.932 5.932 22 Si 0.958 3.042 23 H -0.274 1.274 24 H -0.296 1.296 25 H -0.283 1.283 26 C 0.165 3.835 27 H 0.040 0.960 28 C -0.129 4.129 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.283 0.717 35 H 0.415 0.585 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.006 0.994 41 H 0.052 0.948 42 H 0.248 0.752 43 H 0.038 0.962 44 H 0.079 0.921 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 -1.603 20.357 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.328 6.328 3 C 0.064 3.936 4 C -0.119 4.119 5 N -0.062 5.062 6 O 0.049 5.951 7 C -0.046 4.046 8 C -0.273 4.273 9 C 0.383 3.617 10 O -0.449 6.449 11 N -0.346 5.346 12 C 0.043 3.957 13 H 0.078 0.922 14 C -0.148 4.148 15 C -0.170 4.170 16 C 0.051 3.949 17 N -0.324 5.324 18 C -0.385 4.385 19 H 0.090 0.910 20 C -0.242 4.242 21 N -0.578 5.578 22 Si 0.787 3.213 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.210 1.210 26 C 0.059 3.941 27 H 0.058 0.942 28 C -0.187 4.187 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.298 0.702 35 H 0.252 0.748 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.299 -1.707 21.266 21.587 hybrid contribution -0.138 0.675 -1.975 2.092 sum -3.436 -1.033 19.290 19.621 Atomic orbital electron populations 1.22957 0.78446 1.04202 1.01131 1.87853 1.22246 1.27027 1.95682 1.20579 0.84361 0.85942 1.02701 1.24594 0.97969 1.01905 0.87463 1.73673 0.90191 1.18560 1.23738 1.84569 1.20672 1.65619 1.24196 1.27336 1.00840 0.93803 0.82627 1.22205 0.94254 1.16416 0.94379 1.17023 0.85148 0.75861 0.83712 1.90780 1.20200 1.51372 1.82531 1.45633 1.10080 1.73578 1.05321 1.21361 0.98853 0.96753 0.78732 0.92210 1.21701 1.00910 0.96541 0.95697 1.22023 0.98959 1.00499 0.95488 1.20606 0.92232 0.85537 0.96497 1.44252 1.76856 1.07664 1.03630 1.19395 1.40316 0.88058 0.90693 0.91034 1.25734 0.99377 0.98933 1.00115 1.70152 1.46977 1.26122 1.14561 0.85483 0.77931 0.79666 0.78220 1.19975 1.22257 1.20972 1.20734 0.93144 0.96210 0.84050 0.94240 1.21750 1.00967 0.95131 1.00825 0.88145 0.92024 0.93619 0.89825 0.90491 0.70159 0.74777 0.92875 0.91220 0.93841 0.91088 0.97593 0.92995 0.94247 0.94293 0.90189 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -10.82 10.69 -148.98 -1.59 -12.42 16 3 C 0.14 3.43 6.20 71.24 0.44 3.87 16 4 C 0.04 1.07 7.21 45.16 0.33 1.39 16 5 N -0.36 -8.21 12.01 -44.77 -0.54 -8.74 16 6 O 0.11 1.91 11.06 76.98 0.85 2.76 16 7 C 0.04 0.43 11.85 67.61 0.80 1.24 16 8 C -0.26 -5.79 6.47 -18.75 -0.12 -5.91 16 9 C 0.60 16.36 7.78 86.65 0.67 17.03 16 10 O -0.57 -20.62 15.36 -4.06 -0.06 -20.68 16 11 N -0.69 -16.58 4.59 -445.35 -2.04 -18.63 16 12 C 0.15 4.87 2.00 45.09 0.09 4.96 16 13 H 0.06 2.35 7.58 -2.38 -0.02 2.33 16 14 C -0.11 -3.63 5.47 30.64 0.17 -3.47 16 15 C -0.13 -4.94 6.08 30.67 0.19 -4.75 16 16 C 0.18 8.22 5.28 86.36 0.46 8.68 16 17 N -0.60 -28.23 2.99 -675.23 -2.02 -30.24 16 18 C -0.25 -13.24 8.57 84.03 0.72 -12.52 16 19 H 0.07 3.62 6.24 -2.91 -0.02 3.60 16 20 C -0.05 -2.48 4.94 84.86 0.42 -2.06 16 21 N -0.93 -53.38 11.23 21.65 0.24 -53.14 16 22 Si 0.96 43.93 29.58 68.60 2.03 45.96 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 26 C 0.17 6.00 3.03 44.97 0.14 6.13 16 27 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 28 C -0.13 -4.25 7.84 71.98 0.56 -3.68 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.02 7.11 -2.39 -0.02 2.00 16 34 H 0.28 0.00 7.68 -2.91 -0.02 -0.02 16 35 H 0.41 6.39 7.79 -92.70 -0.72 5.67 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.05 2.77 6.15 -2.39 -0.01 2.76 16 42 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 43 H 0.04 1.39 7.43 -2.39 -0.02 1.37 16 44 H 0.08 1.92 7.81 -2.38 -0.02 1.90 16 45 H 0.05 1.79 7.63 -2.39 -0.02 1.77 16 Total: -1.00 -73.33 367.69 3.27 -70.05 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.29 Total: 12.40 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.11 Total: 12.68 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -4.35 Total: -110.75 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.80 Total: -30.34 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.33 3.27 -70.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994215195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.291 kcal (2) G-P(sol) polarization free energy of solvation -73.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds