Wall clock time and date at job start Tue Mar 31 2020 14:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99635 * 2 1 4 4 C 1.50706 * 109.47023 * 180.02562 * 3 2 1 5 5 N 1.30019 * 127.33070 * 270.00287 * 4 3 2 6 6 O 1.20657 * 112.29688 * 179.97438 * 5 4 3 7 7 C 1.33494 * 113.15972 * 359.75577 * 6 5 4 8 8 C 1.37357 * 106.33742 * 0.39008 * 7 6 5 9 9 C 1.47404 * 128.55976 * 179.91347 * 8 7 6 10 10 O 1.21607 * 119.99584 * 179.67349 * 9 8 7 11 11 N 1.34768 * 120.00214 * 359.67631 * 9 8 7 12 12 C 1.46503 * 120.00339 * 180.27771 * 11 9 8 13 13 H 1.09001 * 109.49183 * 324.65417 * 12 11 9 14 14 C 1.53042 * 109.49764 * 84.71635 * 12 11 9 15 15 C 1.53040 * 109.53567 * 58.59495 * 14 12 11 16 16 C 1.53189 * 109.31377 * 61.35961 * 15 14 12 17 17 N 1.46922 * 108.77614 * 305.36526 * 16 15 14 18 18 C 1.36937 * 120.62734 * 233.58342 * 17 16 15 19 19 H 1.08001 * 119.99626 * 150.17729 * 18 17 16 20 20 C 1.38810 * 120.00632 * 330.17726 * 18 17 16 21 21 N 1.31623 * 120.00042 * 344.49328 * 20 18 17 22 22 Si 1.86802 * 120.00144 * 164.48729 * 20 18 17 23 23 H 1.48493 * 109.46930 * 90.00571 * 22 20 18 24 24 H 1.48503 * 109.46785 * 210.00472 * 22 20 18 25 25 H 1.48494 * 109.47193 * 330.00092 * 22 20 18 26 26 C 1.46918 * 118.73932 * 53.61024 * 17 16 15 27 27 H 1.09005 * 109.58687 * 66.18288 * 26 17 16 28 28 C 1.53004 * 109.58782 * 186.60238 * 26 17 16 29 29 H 1.09005 * 109.46698 * 299.99777 * 1 2 3 30 30 H 1.08998 * 109.47320 * 59.99700 * 1 2 3 31 31 H 1.09003 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47531 * 60.00217 * 3 2 1 33 33 H 1.09000 * 109.47839 * 300.00086 * 3 2 1 34 34 H 1.07999 * 126.82991 * 180.29880 * 7 6 5 35 35 H 0.96999 * 119.99946 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.45677 * 178.61046 * 14 12 11 37 37 H 1.08995 * 109.46047 * 298.57951 * 14 12 11 38 38 H 1.09001 * 109.49290 * 181.31701 * 15 14 12 39 39 H 1.09004 * 109.49250 * 301.37394 * 15 14 12 40 40 H 1.09004 * 109.58805 * 65.15426 * 16 15 14 41 41 H 1.09003 * 109.58462 * 185.57510 * 16 15 14 42 42 H 0.96990 * 120.00252 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.47312 * 179.29348 * 28 26 17 44 44 H 1.09004 * 109.46764 * 299.29125 * 28 26 17 45 45 H 1.08999 * 109.47124 * 59.28499 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2990 1.1241 1.0329 6 8 5.4604 1.0317 0.7194 7 6 5.6476 1.0115 -0.6022 8 6 4.4014 1.1158 -1.1705 9 6 4.0429 1.1434 -2.6000 10 8 2.8768 1.2354 -2.9327 11 7 5.0073 1.0667 -3.5382 12 6 4.6515 1.1004 -4.9590 13 1 3.7042 0.5825 -5.1091 14 6 4.5170 2.5542 -5.4177 15 6 5.8365 3.2911 -5.1763 16 6 6.9458 2.6258 -5.9968 17 7 6.9848 1.1947 -5.6666 18 6 8.1523 0.6031 -5.2640 19 1 8.1258 -0.2418 -4.5918 20 6 9.3700 1.0893 -5.7199 21 7 9.4086 1.9006 -6.7556 22 14 10.9539 0.5922 -4.8633 23 1 11.4920 -0.6398 -5.4938 24 1 11.9489 1.6875 -4.9883 25 1 10.6799 0.3341 -3.4268 26 6 5.7474 0.4103 -5.7771 27 1 5.4427 0.3538 -6.8221 28 6 5.9835 -0.9997 -5.2318 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 6.5912 0.9308 -1.1213 35 1 5.9374 0.9937 -3.2729 36 1 4.2766 2.5789 -6.4806 37 1 3.7211 3.0407 -4.8539 38 1 5.7327 4.3324 -5.4815 39 1 6.0897 3.2460 -4.1170 40 1 6.7388 2.7500 -7.0597 41 1 7.9048 3.0832 -5.7533 42 1 10.2594 2.2406 -7.0739 43 1 5.0611 -1.5760 -5.3031 44 1 6.7636 -1.4889 -5.8152 45 1 6.2942 -0.9386 -4.1888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994215197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:47 Heat of formation + Delta-G solvation = -14.137851 kcal Electronic energy + Delta-G solvation = -28793.450872 eV Core-core repulsion = 24814.610215 eV Total energy + Delta-G solvation = -3978.840657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.04998 -41.09859 -39.20924 -38.83167 -35.61499 -35.08517 -34.14423 -33.54746 -32.87045 -31.01129 -29.35067 -27.92406 -26.86751 -26.72919 -25.75791 -23.66420 -22.47583 -22.28552 -21.80441 -20.25813 -19.39697 -18.89029 -18.20960 -17.93133 -17.33187 -17.10338 -16.81203 -16.50800 -16.23381 -16.15449 -15.65321 -15.47922 -15.01085 -14.82318 -14.66287 -14.37822 -14.19151 -13.63182 -13.48755 -13.37388 -12.92913 -12.84531 -12.69801 -12.55579 -12.53001 -12.37139 -12.30286 -12.14143 -11.89386 -11.63836 -11.36019 -11.29580 -11.17134 -10.98906 -10.83326 -10.73011 -10.45307 -9.93659 -8.56557 -7.77339 -5.24333 0.05549 0.50363 1.54452 1.57876 1.64349 1.86974 2.15558 2.27499 2.58628 2.67800 3.05275 3.38277 3.40109 3.62797 3.77297 3.90339 4.06322 4.09672 4.16084 4.24427 4.27795 4.43002 4.48013 4.52772 4.58848 4.62586 4.68165 4.70033 4.81118 4.82272 4.98762 5.03198 5.07378 5.16273 5.26117 5.38374 5.49137 5.57982 5.63455 5.79720 5.84420 6.03846 6.48763 6.59988 7.06583 7.20343 7.24706 7.93970 8.47854 9.29453 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.003923 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.361349 B = 7135.092205 C = 8052.320706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.144 3.856 4 C 0.049 3.951 5 N -0.357 5.357 6 O 0.108 5.892 7 C 0.026 3.974 8 C -0.262 4.262 9 C 0.595 3.405 10 O -0.567 6.567 11 N -0.686 5.686 12 C 0.146 3.854 13 H 0.082 0.918 14 C -0.116 4.116 15 C -0.126 4.126 16 C 0.180 3.820 17 N -0.595 5.595 18 C -0.247 4.247 19 H 0.085 0.915 20 C -0.048 4.048 21 N -0.937 5.937 22 Si 0.956 3.044 23 H -0.295 1.295 24 H -0.305 1.305 25 H -0.257 1.257 26 C 0.157 3.843 27 H 0.031 0.969 28 C -0.129 4.129 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.266 0.734 35 H 0.410 0.590 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.056 0.944 40 H -0.008 1.008 41 H 0.055 0.945 42 H 0.245 0.755 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 -0.923 11.753 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.329 6.329 3 C 0.067 3.933 4 C -0.114 4.114 5 N -0.062 5.062 6 O 0.046 5.954 7 C -0.055 4.055 8 C -0.269 4.269 9 C 0.382 3.618 10 O -0.448 6.448 11 N -0.336 5.336 12 C 0.040 3.960 13 H 0.100 0.900 14 C -0.154 4.154 15 C -0.165 4.165 16 C 0.054 3.946 17 N -0.320 5.320 18 C -0.377 4.377 19 H 0.103 0.897 20 C -0.243 4.243 21 N -0.583 5.583 22 Si 0.785 3.215 23 H -0.223 1.223 24 H -0.232 1.232 25 H -0.181 1.181 26 C 0.050 3.950 27 H 0.048 0.952 28 C -0.186 4.186 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.281 0.719 35 H 0.247 0.753 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.010 0.990 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.604 -0.968 12.751 17.955 hybrid contribution 1.341 0.212 -1.051 1.717 sum -11.264 -0.757 11.700 16.258 Atomic orbital electron populations 1.22969 0.78340 1.04208 1.01215 1.87864 1.22348 1.26953 1.95694 1.20581 0.83825 0.85994 1.02891 1.24628 0.98104 1.01543 0.87100 1.73649 0.90076 1.18649 1.23875 1.84567 1.20949 1.65966 1.23929 1.27145 1.00991 0.94540 0.82858 1.22315 0.93778 1.15760 0.95073 1.16933 0.85208 0.76217 0.83487 1.90729 1.19591 1.52060 1.82427 1.45714 1.09920 1.72283 1.05722 1.21364 0.98382 0.96502 0.79758 0.90021 1.21729 0.97299 0.95448 1.00974 1.21952 0.95550 0.98483 1.00492 1.20562 0.96459 0.83917 0.93634 1.44358 1.04797 1.04187 1.78611 1.19513 0.83580 1.14098 1.20523 0.89737 1.25786 1.00802 1.00856 0.96873 1.70181 1.24715 1.38017 1.25396 0.85451 0.80194 0.76278 0.79537 1.22264 1.23199 1.18124 1.20834 0.86741 0.91695 0.95703 0.95170 1.21715 1.00828 0.94883 1.01213 0.92132 0.93305 0.88167 0.89764 0.90058 0.71886 0.75267 0.91496 0.92496 0.92175 0.92516 0.98994 0.92628 0.94586 0.92006 0.93380 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.75 16 2 O -0.41 -10.99 10.69 -148.98 -1.59 -12.58 16 3 C 0.14 3.61 6.19 71.24 0.44 4.06 16 4 C 0.05 1.34 7.21 45.16 0.33 1.67 16 5 N -0.36 -9.52 12.01 -44.78 -0.54 -10.05 16 6 O 0.11 2.45 11.06 76.98 0.85 3.30 16 7 C 0.03 0.52 11.85 67.61 0.80 1.33 16 8 C -0.26 -6.90 6.47 -18.75 -0.12 -7.02 16 9 C 0.59 17.94 7.78 86.66 0.67 18.62 16 10 O -0.57 -20.17 15.36 -4.05 -0.06 -20.23 16 11 N -0.69 -19.78 3.47 -445.46 -1.54 -21.32 16 12 C 0.15 4.61 2.32 45.07 0.10 4.71 16 13 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 14 C -0.12 -3.67 5.57 30.62 0.17 -3.50 16 15 C -0.13 -4.31 5.93 30.67 0.18 -4.12 16 16 C 0.18 7.80 5.28 86.36 0.46 8.25 16 17 N -0.60 -25.29 2.64 -675.25 -1.78 -27.08 16 18 C -0.25 -11.39 8.58 84.03 0.72 -10.67 16 19 H 0.09 3.61 6.23 -2.91 -0.02 3.60 16 20 C -0.05 -2.39 4.94 84.86 0.42 -1.97 16 21 N -0.94 -51.58 11.23 21.65 0.24 -51.33 16 22 Si 0.96 40.53 29.58 68.60 2.03 42.56 16 23 H -0.30 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 C 0.16 5.61 3.20 44.98 0.14 5.75 16 27 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 28 C -0.13 -4.12 7.73 71.98 0.56 -3.57 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.08 2.12 7.11 -2.39 -0.02 2.10 16 34 H 0.27 3.18 7.68 -2.91 -0.02 3.16 16 35 H 0.41 11.32 6.95 -92.71 -0.64 10.67 16 36 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.90 7.53 -2.39 -0.02 1.88 16 40 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 41 H 0.06 2.76 6.15 -2.39 -0.01 2.74 16 42 H 0.24 13.37 8.31 -92.72 -0.77 12.60 16 43 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.69 7.67 -2.38 -0.02 1.67 16 45 H 0.06 1.84 6.37 -2.39 -0.02 1.82 16 Total: -1.00 -63.83 364.42 4.10 -59.73 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.37 Total: 21.73 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 6.12 Total: 15.28 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -3.62 Total: -109.78 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.80 Total: -29.52 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -63.83 4.10 -59.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994215197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.594 kcal (2) G-P(sol) polarization free energy of solvation -63.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds