Wall clock time and date at job start Tue Mar 31 2020 14:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00155 * 2 1 4 4 C 1.50700 * 109.47242 * 180.02562 * 3 2 1 5 5 N 1.30010 * 127.33627 * 270.14344 * 4 3 2 6 6 O 1.20661 * 112.30121 * 180.30301 * 5 4 3 7 7 C 1.33490 * 113.15455 * 359.71494 * 6 5 4 8 8 C 1.37357 * 106.34593 * 0.02562 * 7 6 5 9 9 C 1.47401 * 128.56760 * 179.97438 * 8 7 6 10 10 O 1.21609 * 119.99981 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99920 * 0.02562 * 9 8 7 12 12 C 1.46498 * 119.99783 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.50358 * 325.06803 * 12 11 9 14 14 C 1.53040 * 109.52170 * 85.15261 * 12 11 9 15 15 C 1.53049 * 109.53706 * 181.33299 * 14 12 11 16 16 C 1.53625 * 109.23779 * 298.50753 * 15 14 12 17 17 N 1.46921 * 108.54644 * 54.85913 * 16 15 14 18 18 C 1.36935 * 120.63242 * 126.36761 * 17 16 15 19 19 H 1.07996 * 119.99662 * 209.43144 * 18 17 16 20 20 C 1.38810 * 120.00024 * 29.42952 * 18 17 16 21 21 N 1.31624 * 119.99690 * 24.34693 * 20 18 17 22 22 Si 1.86801 * 120.00235 * 204.34653 * 20 18 17 23 23 H 1.48501 * 109.46807 * 59.99825 * 22 20 18 24 24 H 1.48506 * 109.47073 * 300.00309 * 22 20 18 25 25 H 1.48494 * 109.47251 * 180.02562 * 22 20 18 26 26 C 1.46926 * 118.73544 * 306.09306 * 17 16 15 27 27 H 1.09004 * 109.58638 * 294.06752 * 26 17 16 28 28 C 1.52998 * 109.58699 * 173.64816 * 26 17 16 29 29 H 1.09006 * 109.46958 * 299.99470 * 1 2 3 30 30 H 1.09001 * 109.47321 * 59.99812 * 1 2 3 31 31 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47085 * 60.00219 * 3 2 1 33 33 H 1.09001 * 109.47006 * 300.00441 * 3 2 1 34 34 H 1.08004 * 126.82903 * 180.02562 * 7 6 5 35 35 H 0.96999 * 119.99958 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.46070 * 301.34558 * 14 12 11 37 37 H 1.08999 * 109.46408 * 61.31080 * 14 12 11 38 38 H 1.08996 * 109.49888 * 58.58005 * 15 14 12 39 39 H 1.08996 * 109.49607 * 178.68224 * 15 14 12 40 40 H 1.08999 * 109.74014 * 295.11513 * 16 15 14 41 41 H 1.08998 * 109.65957 * 174.55241 * 16 15 14 42 42 H 0.97001 * 120.00274 * 4.04776 * 21 20 18 43 43 H 1.08998 * 109.47217 * 59.99759 * 28 26 17 44 44 H 1.09004 * 109.47406 * 179.97438 * 28 26 17 45 45 H 1.09000 * 109.47113 * 300.00117 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2988 1.1213 1.0327 6 8 5.4609 1.0360 0.7193 7 6 5.6485 1.0236 -0.6023 8 6 4.4015 1.1167 -1.1707 9 6 4.0429 1.1454 -2.6001 10 8 2.8764 1.2326 -2.9328 11 7 5.0078 1.0750 -3.5385 12 6 4.6513 1.1029 -4.9591 13 1 3.7047 0.5833 -5.1071 14 6 4.5152 2.5547 -5.4237 15 6 4.1103 2.5840 -6.8994 16 6 5.2060 1.9090 -7.7384 17 7 5.4397 0.5606 -7.2039 18 6 5.3774 -0.5351 -8.0229 19 1 5.0767 -1.4920 -7.6227 20 6 5.7007 -0.4157 -9.3676 21 7 6.4967 0.5524 -9.7696 22 14 5.0062 -1.6291 -10.6065 23 1 3.5229 -1.5621 -10.5868 24 1 5.4444 -3.0032 -10.2527 25 1 5.4998 -1.2869 -11.9646 26 6 5.7476 0.4106 -5.7751 27 1 6.7110 0.8722 -5.5585 28 6 5.7948 -1.0753 -5.4138 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 6.5930 0.9542 -1.1215 35 1 5.9381 1.0050 -3.2731 36 1 3.7527 3.0567 -4.8281 37 1 5.4691 3.0671 -5.2987 38 1 3.1688 2.0504 -7.0290 39 1 3.9907 3.6179 -7.2234 40 1 6.1260 2.4904 -7.6787 41 1 4.8821 1.8394 -8.7768 42 1 6.9042 1.1465 -9.1201 43 1 6.5668 -1.5685 -6.0045 44 1 6.0237 -1.1844 -4.3537 45 1 4.8280 -1.5317 -5.6259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994215199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:51 Heat of formation + Delta-G solvation = 1.543381 kcal Electronic energy + Delta-G solvation = -28183.322121 eV Core-core repulsion = 24205.161454 eV Total energy + Delta-G solvation = -3978.160668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.22532 -39.84239 -38.17196 -37.75006 -34.63145 -34.23076 -32.94297 -32.32912 -31.60349 -29.20414 -28.50031 -26.49218 -25.96705 -25.16073 -24.53675 -22.07232 -21.60536 -20.97667 -20.42323 -19.58642 -18.37567 -18.06370 -17.14103 -16.84968 -16.50663 -16.09043 -15.83119 -15.38214 -14.85208 -14.75351 -14.48108 -14.03617 -13.73382 -13.62593 -13.40649 -13.26868 -12.80690 -12.63547 -12.58644 -11.97578 -11.78967 -11.68901 -11.41037 -11.31949 -11.14833 -10.78047 -10.48477 -10.43496 -10.41348 -10.25340 -10.11284 -10.05790 -10.01166 -9.95197 -9.81346 -9.23851 -8.86561 -8.39324 -6.93329 -6.11046 -3.29159 0.82813 1.37476 2.63923 3.08748 3.17797 3.47243 3.48803 3.51851 3.69019 3.86272 4.16383 4.54947 4.56929 4.76099 4.93644 4.99498 5.11973 5.13434 5.20025 5.24674 5.33012 5.37528 5.47354 5.49458 5.55850 5.59884 5.76862 5.89726 6.04912 6.19034 6.27351 6.33471 6.41108 6.52114 6.53457 6.61858 6.82195 6.83596 6.92946 7.05934 7.15368 7.51558 7.86717 7.99513 8.19959 8.54220 9.05368 9.80266 10.22924 11.18194 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.003038 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.157472 B = 9214.140570 C = 9595.787420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.142 3.858 4 C 0.064 3.936 5 N -0.340 5.340 6 O 0.105 5.895 7 C -0.011 4.011 8 C -0.231 4.231 9 C 0.591 3.409 10 O -0.525 6.525 11 N -0.710 5.710 12 C 0.132 3.868 13 H 0.090 0.910 14 C -0.117 4.117 15 C -0.135 4.135 16 C 0.149 3.851 17 N -0.589 5.589 18 C -0.351 4.351 19 H 0.062 0.938 20 C -0.021 4.021 21 N -0.915 5.915 22 Si 1.065 2.935 23 H -0.293 1.293 24 H -0.293 1.293 25 H -0.286 1.286 26 C 0.169 3.831 27 H 0.026 0.974 28 C -0.134 4.134 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.229 0.771 35 H 0.394 0.606 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.080 0.920 42 H 0.269 0.731 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 3.290 18.638 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.065 3.935 4 C -0.099 4.099 5 N -0.045 5.045 6 O 0.042 5.958 7 C -0.093 4.093 8 C -0.239 4.239 9 C 0.376 3.624 10 O -0.402 6.402 11 N -0.360 5.360 12 C 0.027 3.973 13 H 0.108 0.892 14 C -0.156 4.156 15 C -0.174 4.174 16 C 0.023 3.977 17 N -0.313 5.313 18 C -0.480 4.480 19 H 0.079 0.921 20 C -0.223 4.223 21 N -0.555 5.555 22 Si 0.894 3.106 23 H -0.220 1.220 24 H -0.220 1.220 25 H -0.211 1.211 26 C 0.062 3.938 27 H 0.043 0.957 28 C -0.192 4.192 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.245 0.755 35 H 0.228 0.772 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.661 2.766 18.035 18.832 hybrid contribution 0.395 0.594 1.003 1.231 sum -4.267 3.361 19.038 19.797 Atomic orbital electron populations 1.22773 0.80020 1.03161 1.00269 1.87912 1.20349 1.26222 1.95517 1.20562 0.84154 0.86256 1.02518 1.24366 0.97462 1.01317 0.86776 1.73665 0.89524 1.17785 1.23560 1.84582 1.21572 1.66402 1.23269 1.26444 1.00406 0.98630 0.83812 1.22473 0.92648 1.12833 0.95953 1.16794 0.85770 0.77031 0.82769 1.90795 1.18322 1.49378 1.81729 1.45955 1.09011 1.73957 1.07066 1.21845 1.01486 0.96954 0.77024 0.89212 1.21768 1.00656 0.95980 0.97186 1.22137 1.00986 0.99846 0.94473 1.21101 0.93773 0.84996 0.97793 1.44116 1.81422 1.03238 1.02522 1.19935 1.45038 0.90317 0.92729 0.92058 1.25869 0.96678 1.02292 0.97509 1.70796 1.26147 1.20264 1.38287 0.83520 0.75935 0.74820 0.76288 1.21983 1.21956 1.21127 1.20550 0.92914 0.94197 0.86163 0.95676 1.21792 1.02735 0.96311 0.98317 0.94005 0.93328 0.89269 0.91470 0.89259 0.75482 0.77212 0.92848 0.92680 0.92060 0.92741 0.96354 0.90183 0.92004 0.91689 0.94380 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.15 10.69 -35.23 -0.38 -5.52 16 3 C 0.14 1.74 6.19 36.01 0.22 1.96 16 4 C 0.06 0.83 7.21 -79.77 -0.58 0.25 16 5 N -0.34 -4.25 12.01 34.78 0.42 -3.83 16 6 O 0.11 1.07 11.06 18.66 0.21 1.28 16 7 C -0.01 -0.09 11.85 30.41 0.36 0.27 16 8 C -0.23 -2.81 6.47 -102.89 -0.67 -3.48 16 9 C 0.59 8.64 7.78 -12.53 -0.10 8.55 16 10 O -0.53 -9.55 15.36 5.27 0.08 -9.47 16 11 N -0.71 -9.48 4.58 -54.77 -0.25 -9.74 16 12 C 0.13 2.25 1.99 -67.81 -0.14 2.11 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 14 C -0.12 -1.96 5.46 -26.69 -0.15 -2.11 16 15 C -0.13 -2.50 6.10 -26.38 -0.16 -2.66 16 16 C 0.15 3.32 4.71 -3.49 -0.02 3.30 16 17 N -0.59 -13.78 2.83 -164.52 -0.46 -14.25 16 18 C -0.35 -9.23 8.48 -15.06 -0.13 -9.36 16 19 H 0.06 1.62 6.30 -52.49 -0.33 1.28 16 20 C -0.02 -0.57 4.69 -17.43 -0.08 -0.65 16 21 N -0.92 -26.41 12.51 55.49 0.69 -25.72 16 22 Si 1.06 24.62 29.98 -169.99 -5.10 19.52 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 26 C 0.17 3.23 3.03 -67.60 -0.20 3.02 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 28 C -0.13 -2.42 7.83 37.16 0.29 -2.13 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.12 7.11 -51.93 -0.37 0.76 16 34 H 0.23 0.79 7.68 -52.48 -0.40 0.38 16 35 H 0.39 3.95 7.79 -40.82 -0.32 3.64 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.41 7.84 -51.93 -0.41 0.01 16 41 H 0.08 2.02 6.41 -51.93 -0.33 1.68 16 42 H 0.27 7.77 6.63 -40.82 -0.27 7.50 16 43 H 0.06 1.27 7.62 -51.93 -0.40 0.88 16 44 H 0.04 0.55 7.80 -51.93 -0.41 0.15 16 45 H 0.06 1.10 7.44 -51.93 -0.39 0.71 16 LS Contribution 366.63 15.07 5.53 5.53 Total: -1.00 -33.11 366.63 -6.10 -39.21 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.61 Total: 2.48 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.22 Total: 0.51 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.40 Total: -53.53 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.09 Total: -13.71 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.10 Total: 19.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.11 -6.10 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994215199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.756 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds