Wall clock time and date at job start Tue Mar 31 2020 14:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00155 * 2 1 4 4 C 1.50700 * 109.47242 * 180.02562 * 3 2 1 5 5 N 1.30010 * 127.33627 * 270.14344 * 4 3 2 6 6 O 1.20661 * 112.30121 * 180.30301 * 5 4 3 7 7 C 1.33490 * 113.15455 * 359.71494 * 6 5 4 8 8 C 1.37357 * 106.34593 * 0.02562 * 7 6 5 9 9 C 1.47401 * 128.56760 * 179.97438 * 8 7 6 10 10 O 1.21609 * 119.99981 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99920 * 0.02562 * 9 8 7 12 12 C 1.46498 * 119.99783 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.50358 * 325.06803 * 12 11 9 14 14 C 1.53040 * 109.52170 * 85.15261 * 12 11 9 15 15 C 1.53049 * 109.53706 * 181.33299 * 14 12 11 16 16 C 1.53625 * 109.23779 * 298.50753 * 15 14 12 17 17 N 1.46921 * 108.54644 * 54.85913 * 16 15 14 18 18 C 1.36935 * 120.63242 * 126.36761 * 17 16 15 19 19 H 1.07996 * 119.99662 * 209.43144 * 18 17 16 20 20 C 1.38810 * 120.00024 * 29.42952 * 18 17 16 21 21 N 1.31624 * 119.99690 * 24.34693 * 20 18 17 22 22 Si 1.86801 * 120.00235 * 204.34653 * 20 18 17 23 23 H 1.48501 * 109.46807 * 59.99825 * 22 20 18 24 24 H 1.48506 * 109.47073 * 300.00309 * 22 20 18 25 25 H 1.48494 * 109.47251 * 180.02562 * 22 20 18 26 26 C 1.46926 * 118.73544 * 306.09306 * 17 16 15 27 27 H 1.09004 * 109.58638 * 294.06752 * 26 17 16 28 28 C 1.52998 * 109.58699 * 173.64816 * 26 17 16 29 29 H 1.09006 * 109.46958 * 299.99470 * 1 2 3 30 30 H 1.09001 * 109.47321 * 59.99812 * 1 2 3 31 31 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47085 * 60.00219 * 3 2 1 33 33 H 1.09001 * 109.47006 * 300.00441 * 3 2 1 34 34 H 1.08004 * 126.82903 * 180.02562 * 7 6 5 35 35 H 0.96999 * 119.99958 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.46070 * 301.34558 * 14 12 11 37 37 H 1.08999 * 109.46408 * 61.31080 * 14 12 11 38 38 H 1.08996 * 109.49888 * 58.58005 * 15 14 12 39 39 H 1.08996 * 109.49607 * 178.68224 * 15 14 12 40 40 H 1.08999 * 109.74014 * 295.11513 * 16 15 14 41 41 H 1.08998 * 109.65957 * 174.55241 * 16 15 14 42 42 H 0.97001 * 120.00274 * 4.04776 * 21 20 18 43 43 H 1.08998 * 109.47217 * 59.99759 * 28 26 17 44 44 H 1.09004 * 109.47406 * 179.97438 * 28 26 17 45 45 H 1.09000 * 109.47113 * 300.00117 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2988 1.1213 1.0327 6 8 5.4609 1.0360 0.7193 7 6 5.6485 1.0236 -0.6023 8 6 4.4015 1.1167 -1.1707 9 6 4.0429 1.1454 -2.6001 10 8 2.8764 1.2326 -2.9328 11 7 5.0078 1.0750 -3.5385 12 6 4.6513 1.1029 -4.9591 13 1 3.7047 0.5833 -5.1071 14 6 4.5152 2.5547 -5.4237 15 6 4.1103 2.5840 -6.8994 16 6 5.2060 1.9090 -7.7384 17 7 5.4397 0.5606 -7.2039 18 6 5.3774 -0.5351 -8.0229 19 1 5.0767 -1.4920 -7.6227 20 6 5.7007 -0.4157 -9.3676 21 7 6.4967 0.5524 -9.7696 22 14 5.0062 -1.6291 -10.6065 23 1 3.5229 -1.5621 -10.5868 24 1 5.4444 -3.0032 -10.2527 25 1 5.4998 -1.2869 -11.9646 26 6 5.7476 0.4106 -5.7751 27 1 6.7110 0.8722 -5.5585 28 6 5.7948 -1.0753 -5.4138 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 6.5930 0.9542 -1.1215 35 1 5.9381 1.0050 -3.2731 36 1 3.7527 3.0567 -4.8281 37 1 5.4691 3.0671 -5.2987 38 1 3.1688 2.0504 -7.0290 39 1 3.9907 3.6179 -7.2234 40 1 6.1260 2.4904 -7.6787 41 1 4.8821 1.8394 -8.7768 42 1 6.9042 1.1465 -9.1201 43 1 6.5668 -1.5685 -6.0045 44 1 6.0237 -1.1844 -4.3537 45 1 4.8280 -1.5317 -5.6259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994215199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:50 Heat of formation + Delta-G solvation = -21.790716 kcal Electronic energy + Delta-G solvation = -28184.333964 eV Core-core repulsion = 24205.161454 eV Total energy + Delta-G solvation = -3979.172510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.09573 -41.11271 -39.39637 -38.93780 -36.14951 -35.13943 -34.43009 -33.64910 -32.97575 -30.78946 -29.39721 -27.99684 -26.94675 -26.73268 -25.75264 -23.59826 -22.59512 -22.42703 -21.57452 -21.13258 -19.44496 -18.93205 -18.87903 -17.91595 -17.38023 -17.31653 -16.81857 -16.42399 -16.36735 -16.05955 -15.84118 -15.46262 -15.37264 -15.08281 -14.84875 -14.59675 -14.24494 -13.65493 -13.48491 -13.40497 -13.04055 -12.96487 -12.74258 -12.59491 -12.57147 -12.54130 -12.04773 -11.93064 -11.90960 -11.80902 -11.70212 -11.34110 -11.29624 -11.02901 -10.87282 -10.78382 -10.45147 -10.09464 -8.87486 -8.19321 -5.35431 0.02760 0.47588 1.59914 1.66794 1.76831 1.85060 2.06789 2.17824 2.61873 2.69130 3.01491 3.26341 3.33431 3.50409 3.70805 3.79772 3.89160 3.98283 4.09552 4.11736 4.23577 4.25205 4.39376 4.43099 4.48068 4.53158 4.59028 4.62791 4.68911 4.73852 4.76886 4.85622 4.95187 5.03061 5.10062 5.18765 5.27741 5.33314 5.40116 5.56156 5.95660 5.99019 6.45128 6.47508 7.06181 7.08837 7.14557 7.82400 8.25915 9.07471 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.003038 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.157472 B = 9214.140570 C = 9595.787420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.141 3.859 4 C 0.043 3.957 5 N -0.356 5.356 6 O 0.113 5.887 7 C 0.036 3.964 8 C -0.265 4.265 9 C 0.596 3.404 10 O -0.568 6.568 11 N -0.695 5.695 12 C 0.150 3.850 13 H 0.056 0.944 14 C -0.109 4.109 15 C -0.125 4.125 16 C 0.155 3.845 17 N -0.608 5.608 18 C -0.347 4.347 19 H 0.057 0.943 20 C -0.072 4.072 21 N -0.944 5.944 22 Si 1.108 2.892 23 H -0.286 1.286 24 H -0.276 1.276 25 H -0.293 1.293 26 C 0.167 3.833 27 H 0.042 0.958 28 C -0.126 4.126 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.283 0.717 35 H 0.415 0.585 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.016 0.984 41 H 0.043 0.957 42 H 0.257 0.743 43 H 0.045 0.955 44 H 0.078 0.922 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 3.314 20.743 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.329 6.329 3 C 0.064 3.936 4 C -0.119 4.119 5 N -0.061 5.061 6 O 0.050 5.950 7 C -0.046 4.046 8 C -0.273 4.273 9 C 0.383 3.617 10 O -0.448 6.448 11 N -0.347 5.347 12 C 0.043 3.957 13 H 0.075 0.925 14 C -0.148 4.148 15 C -0.165 4.165 16 C 0.029 3.971 17 N -0.333 5.333 18 C -0.476 4.476 19 H 0.074 0.926 20 C -0.269 4.269 21 N -0.586 5.586 22 Si 0.933 3.067 23 H -0.212 1.212 24 H -0.202 1.202 25 H -0.220 1.220 26 C 0.060 3.940 27 H 0.059 0.941 28 C -0.183 4.183 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.298 0.702 35 H 0.252 0.748 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.034 0.966 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.589 2.788 20.205 20.709 hybrid contribution 0.087 0.586 0.446 0.742 sum -3.502 3.374 20.651 21.215 Atomic orbital electron populations 1.22961 0.78417 1.04188 1.01168 1.87858 1.22284 1.27096 1.95686 1.20589 0.84321 0.85935 1.02752 1.24601 0.97999 1.01869 0.87425 1.73672 0.90173 1.18508 1.23730 1.84572 1.20638 1.65638 1.24155 1.27328 1.00821 0.93777 0.82665 1.22193 0.94260 1.16526 0.94329 1.17028 0.85106 0.75830 0.83734 1.90782 1.20192 1.51304 1.82531 1.45614 1.10066 1.73746 1.05243 1.21313 0.99038 0.96500 0.78844 0.92548 1.21692 1.01669 0.95919 0.95499 1.22000 0.98665 1.00391 0.95436 1.20953 0.94598 0.85043 0.96505 1.44335 1.81966 1.02868 1.04161 1.20121 1.43240 0.91014 0.93272 0.92555 1.26982 0.96951 1.03383 0.99555 1.70897 1.28205 1.21602 1.37924 0.82928 0.75654 0.73990 0.74088 1.21220 1.20191 1.21957 1.20726 0.94043 0.95298 0.83928 0.94084 1.21711 1.00876 0.95178 1.00575 0.91901 0.93607 0.88246 0.89724 0.90444 0.70195 0.74773 0.92310 0.90839 0.93756 0.90510 0.96645 0.93874 0.93285 0.93538 0.90296 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.77 16 2 O -0.41 -11.00 10.69 -148.98 -1.59 -12.59 16 3 C 0.14 3.41 6.19 71.24 0.44 3.85 16 4 C 0.04 1.07 7.21 45.16 0.33 1.40 16 5 N -0.36 -8.15 12.01 -44.78 -0.54 -8.69 16 6 O 0.11 1.90 11.06 77.01 0.85 2.76 16 7 C 0.04 0.43 11.85 67.61 0.80 1.24 16 8 C -0.27 -5.78 6.47 -18.74 -0.12 -5.90 16 9 C 0.60 16.33 7.78 86.66 0.67 17.01 16 10 O -0.57 -20.57 15.36 -4.06 -0.06 -20.63 16 11 N -0.70 -16.55 4.58 -445.46 -2.04 -18.59 16 12 C 0.15 4.87 1.99 45.07 0.09 4.96 16 13 H 0.06 2.26 7.58 -2.39 -0.02 2.25 16 14 C -0.11 -3.45 5.46 30.62 0.17 -3.29 16 15 C -0.13 -4.59 6.10 30.82 0.19 -4.41 16 16 C 0.15 6.97 4.71 86.51 0.41 7.37 16 17 N -0.61 -28.58 2.83 -674.41 -1.91 -30.49 16 18 C -0.35 -18.45 8.48 84.03 0.71 -17.74 16 19 H 0.06 3.00 6.30 -2.91 -0.02 2.99 16 20 C -0.07 -3.97 4.69 84.86 0.40 -3.57 16 21 N -0.94 -55.74 12.51 21.65 0.27 -55.47 16 22 Si 1.11 50.37 29.98 68.60 2.06 52.43 16 23 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 26 C 0.17 6.10 3.03 44.98 0.14 6.23 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 C -0.13 -4.36 7.83 71.98 0.56 -3.80 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 2.00 7.11 -2.39 -0.02 1.99 16 34 H 0.28 -0.02 7.68 -2.91 -0.02 -0.04 16 35 H 0.41 6.37 7.79 -92.71 -0.72 5.64 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 40 H 0.02 0.70 7.84 -2.39 -0.02 0.68 16 41 H 0.04 2.24 6.41 -2.39 -0.02 2.23 16 42 H 0.26 15.27 6.63 -92.71 -0.62 14.65 16 43 H 0.05 1.77 7.62 -2.39 -0.02 1.75 16 44 H 0.08 2.04 7.80 -2.38 -0.02 2.02 16 45 H 0.03 1.35 7.44 -2.39 -0.02 1.33 16 Total: -1.00 -75.55 366.63 3.52 -72.03 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.44 Total: 14.11 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 6.03 Total: 5.14 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -4.21 Total: -113.24 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.80 Total: -30.47 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.06 Total: 52.43 kcal Total: -75.55 3.52 -72.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994215199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.238 kcal (2) G-P(sol) polarization free energy of solvation -75.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds