Wall clock time and date at job start Tue Mar 31 2020 14:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35349 * 117.00239 * 179.97438 * 3 2 1 5 5 N 1.30550 * 125.44842 * 179.97438 * 4 3 2 6 6 C 1.36328 * 108.38311 * 179.97438 * 5 4 3 7 7 C 1.47372 * 126.41024 * 180.02562 * 6 5 4 8 8 O 1.21621 * 119.99750 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00140 * 359.96867 * 7 6 5 10 10 C 1.47023 * 125.64672 * 0.03214 * 9 7 6 11 11 C 1.54325 * 107.26971 * 181.02276 * 10 9 7 12 12 H 1.09005 * 110.71621 * 263.82908 * 11 10 9 13 13 N 1.46497 * 110.72056 * 140.55282 * 11 10 9 14 14 C 1.36940 * 119.99689 * 86.45181 * 13 11 10 15 15 H 1.07993 * 120.00278 * 359.97438 * 14 13 11 16 16 C 1.38817 * 119.99695 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99777 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99920 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46883 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46843 * 120.00448 * 18 16 14 21 21 H 1.48490 * 109.47078 * 240.00240 * 18 16 14 22 22 C 1.55160 * 102.94326 * 22.18570 * 11 10 9 23 23 C 1.53003 * 110.99969 * 82.57507 * 22 11 10 24 24 C 1.53001 * 111.00256 * 206.38859 * 22 11 10 25 25 C 1.47424 * 125.64986 * 179.71799 * 9 7 6 26 26 C 1.35908 * 107.17746 * 359.97438 * 6 5 4 27 27 O 1.34206 * 125.44643 * 359.69440 * 4 3 2 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 32 32 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 33 33 H 1.09005 * 109.87926 * 300.43427 * 10 9 7 34 34 H 1.08991 * 109.88561 * 61.60088 * 10 9 7 35 35 H 0.96998 * 120.00384 * 266.44660 * 13 11 10 36 36 H 0.97003 * 119.99534 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47113 * 59.99960 * 23 22 11 38 38 H 1.09005 * 109.46812 * 179.97438 * 23 22 11 39 39 H 1.09000 * 109.47163 * 299.99771 * 23 22 11 40 40 H 1.08993 * 109.46939 * 60.00095 * 24 22 11 41 41 H 1.09000 * 109.46546 * 180.02562 * 24 22 11 42 42 H 1.08999 * 109.47029 * 299.99943 * 24 22 11 43 43 H 1.09003 * 110.36440 * 274.75139 * 25 9 7 44 44 H 1.08997 * 110.36491 * 37.06724 * 25 9 7 45 45 H 1.08002 * 126.45941 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 0.0005 5 7 3.9594 2.6782 0.0001 6 6 5.3039 2.4524 0.0015 7 6 6.3630 3.4771 0.0021 8 8 7.5324 3.1429 0.0038 9 7 6.0358 4.7846 0.0007 10 6 4.6687 5.3256 -0.0008 11 6 4.7850 6.8643 -0.0284 12 1 4.7106 7.2747 0.9787 13 7 3.7640 7.4456 -0.9034 14 6 2.5169 7.7228 -0.4103 15 1 2.2860 7.5125 0.6235 16 6 1.5495 8.2742 -1.2392 17 7 1.8309 8.5301 -2.4993 18 14 -0.1519 8.6517 -0.5668 19 1 -0.2121 8.2735 0.8680 20 1 -0.4287 10.1039 -0.7076 21 1 -1.1670 7.8784 -1.3260 22 6 6.2041 7.0951 -0.6118 23 6 6.1892 7.0116 -2.1395 24 6 6.7781 8.4341 -0.1442 25 6 6.9892 5.9090 0.0070 26 6 5.4846 1.1054 0.0033 27 8 4.2630 0.5428 0.0069 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 4.1337 4.9785 -0.8848 34 1 4.1439 5.0096 0.9006 35 1 3.9712 7.6343 -1.8320 36 1 1.1548 8.9150 -3.0786 37 1 5.5192 7.7732 -2.5385 38 1 7.1963 7.1776 -2.5222 39 1 5.8416 6.0251 -2.4460 40 1 6.8420 8.4418 0.9439 41 1 7.7730 8.5707 -0.5680 42 1 6.1280 9.2437 -0.4757 43 1 7.2929 6.1431 1.0274 44 1 7.8601 5.6712 -0.6037 45 1 6.4309 0.5848 0.0051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996010834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:40 Heat of formation + Delta-G solvation = -21.734533 kcal Electronic energy + Delta-G solvation = -28276.404135 eV Core-core repulsion = 24297.234061 eV Total energy + Delta-G solvation = -3979.170074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.46732 -39.89573 -39.05415 -37.84208 -34.98995 -34.01779 -32.97813 -32.16264 -30.71682 -29.60118 -27.46526 -26.94098 -26.66164 -24.15416 -23.88796 -23.33877 -22.25846 -21.22063 -19.95513 -18.74307 -18.10913 -17.64591 -17.18567 -16.95076 -16.42157 -15.89479 -15.60248 -15.31137 -14.96427 -14.53352 -13.99865 -13.84192 -13.62784 -13.46476 -13.15694 -13.05660 -12.93052 -12.62245 -12.39904 -12.08834 -12.02392 -11.94533 -11.58493 -11.48690 -11.18286 -10.96868 -10.93162 -10.85876 -10.67410 -10.49010 -10.30404 -10.12008 -10.04738 -9.74699 -9.56665 -8.89441 -8.76936 -8.19461 -6.97488 -5.76074 -3.04911 1.08549 1.83271 2.10357 2.63810 3.19421 3.43157 3.45254 3.51517 3.53329 4.37495 4.49346 4.49861 4.61563 4.79321 4.82504 4.87480 5.04685 5.18428 5.26090 5.34426 5.41614 5.45287 5.59580 5.64575 5.70316 5.74461 5.87910 5.89244 5.92690 6.05790 6.10365 6.23391 6.35438 6.43730 6.47878 6.60265 6.66394 6.74094 6.75530 6.83319 7.07775 7.53286 7.73868 7.81774 8.30062 8.42740 9.54763 10.09492 10.44696 11.46536 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.005091 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.527911 B = 5499.116341 C = 8436.971598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.241 6.241 4 C 0.379 3.621 5 N -0.438 5.438 6 C -0.036 4.036 7 C 0.611 3.389 8 O -0.552 6.552 9 N -0.591 5.591 10 C 0.086 3.914 11 C 0.177 3.823 12 H 0.064 0.936 13 N -0.710 5.710 14 C -0.239 4.239 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.932 5.932 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.087 4.087 23 C -0.132 4.132 24 C -0.128 4.128 25 C 0.118 3.882 26 C -0.009 4.009 27 O -0.229 6.229 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.389 0.611 36 H 0.254 0.746 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 -15.854 4.995 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.149 6.149 4 C 0.133 3.867 5 N -0.183 5.183 6 C -0.155 4.155 7 C 0.398 3.602 8 O -0.432 6.432 9 N -0.321 5.321 10 C -0.039 4.039 11 C 0.065 3.935 12 H 0.082 0.918 13 N -0.353 5.353 14 C -0.370 4.370 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.737 3.263 19 H -0.205 1.205 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.088 4.088 23 C -0.189 4.189 24 C -0.186 4.186 25 C -0.005 4.005 26 C -0.081 4.081 27 O -0.121 6.121 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.226 0.774 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.277 -15.375 5.080 17.031 hybrid contribution -0.815 -0.759 0.005 1.114 sum 4.463 -16.135 5.085 17.496 Atomic orbital electron populations 1.21813 0.91261 1.03427 1.04519 1.23023 0.96925 0.79582 1.02749 1.86453 1.08905 1.30432 1.89133 1.23498 0.83484 0.81558 0.98132 1.71491 1.03692 1.20629 1.22449 1.21656 0.90430 0.93718 1.09695 1.16291 0.85871 0.80713 0.77330 1.90789 1.18029 1.81097 1.53313 1.48302 1.10386 1.03975 1.69433 1.23391 0.80462 0.97076 1.02991 1.21287 0.87480 0.89773 0.94940 0.91817 1.42518 1.09155 1.72947 1.10643 1.19304 0.88331 1.34027 0.95322 0.91016 1.24714 0.98313 1.01830 0.95755 1.69667 1.33873 1.49735 1.04757 0.86136 0.84696 0.77479 0.78010 1.20502 1.21966 1.21920 1.22031 0.96488 0.93879 0.96427 1.21645 1.01034 1.02656 0.93591 1.21644 1.00147 0.96293 1.00523 1.22418 0.92400 0.85032 1.00616 1.24837 0.85799 0.92830 1.04669 1.84366 1.16214 1.39440 1.72088 0.89615 0.90771 0.90874 0.91002 0.90948 0.89914 0.91695 0.77369 0.93566 0.90847 0.93329 0.92760 0.92814 0.93123 0.91291 0.91342 0.90644 0.75011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.45 6.38 37.16 0.24 0.68 16 3 O -0.24 -3.26 10.19 -40.97 -0.42 -3.68 16 4 C 0.38 5.63 8.98 52.22 0.47 6.10 16 5 N -0.44 -7.64 8.87 -11.72 -0.10 -7.75 16 6 C -0.04 -0.58 6.82 -82.99 -0.57 -1.14 16 7 C 0.61 10.75 7.84 -12.54 -0.10 10.65 16 8 O -0.55 -10.28 17.14 5.26 0.09 -10.19 16 9 N -0.59 -10.39 3.31 -171.67 -0.57 -10.96 16 10 C 0.09 1.67 4.95 -3.06 -0.02 1.66 16 11 C 0.18 3.51 2.84 -66.10 -0.19 3.32 16 12 H 0.06 1.27 8.02 -51.93 -0.42 0.85 16 13 N -0.71 -17.23 5.08 -51.65 -0.26 -17.49 16 14 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 18 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 C -0.09 -1.43 0.87 -152.24 -0.13 -1.56 16 23 C -0.13 -2.24 7.94 37.16 0.30 -1.94 16 24 C -0.13 -1.87 8.68 37.16 0.32 -1.54 16 25 C 0.12 1.85 5.85 -2.41 -0.01 1.83 16 26 C -0.01 -0.11 11.93 29.90 0.36 0.25 16 27 O -0.23 -2.85 10.20 -17.77 -0.18 -3.03 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.83 7.52 -51.93 -0.39 1.44 16 34 H 0.06 1.30 7.75 -51.93 -0.40 0.90 16 35 H 0.39 9.93 5.26 -40.82 -0.21 9.72 16 36 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.07 1.39 6.34 -51.93 -0.33 1.06 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.99 7.91 -51.93 -0.41 0.58 16 40 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 0.98 7.99 -51.93 -0.41 0.57 16 44 H 0.08 1.15 7.95 -51.93 -0.41 0.74 16 45 H 0.23 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -32.61 373.73 -6.07 -38.68 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.76 Total: 7.84 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 0.80 Total: 10.61 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.21 Total: -63.14 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.51 Total: -16.89 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.61 -6.07 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996010834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.949 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds