Wall clock time and date at job start Tue Mar 31 2020 14:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35349 * 117.00239 * 179.97438 * 3 2 1 5 5 N 1.30550 * 125.44842 * 179.97438 * 4 3 2 6 6 C 1.36328 * 108.38311 * 179.97438 * 5 4 3 7 7 C 1.47372 * 126.41024 * 180.02562 * 6 5 4 8 8 O 1.21621 * 119.99750 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00140 * 359.96867 * 7 6 5 10 10 C 1.47023 * 125.64672 * 0.03214 * 9 7 6 11 11 C 1.54325 * 107.26971 * 181.02276 * 10 9 7 12 12 H 1.09005 * 110.71621 * 263.82908 * 11 10 9 13 13 N 1.46497 * 110.72056 * 140.55282 * 11 10 9 14 14 C 1.36940 * 119.99689 * 86.45181 * 13 11 10 15 15 H 1.07993 * 120.00278 * 359.97438 * 14 13 11 16 16 C 1.38817 * 119.99695 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99777 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99920 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46883 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46843 * 120.00448 * 18 16 14 21 21 H 1.48490 * 109.47078 * 240.00240 * 18 16 14 22 22 C 1.55160 * 102.94326 * 22.18570 * 11 10 9 23 23 C 1.53003 * 110.99969 * 82.57507 * 22 11 10 24 24 C 1.53001 * 111.00256 * 206.38859 * 22 11 10 25 25 C 1.47424 * 125.64986 * 179.71799 * 9 7 6 26 26 C 1.35908 * 107.17746 * 359.97438 * 6 5 4 27 27 O 1.34206 * 125.44643 * 359.69440 * 4 3 2 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 32 32 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 33 33 H 1.09005 * 109.87926 * 300.43427 * 10 9 7 34 34 H 1.08991 * 109.88561 * 61.60088 * 10 9 7 35 35 H 0.96998 * 120.00384 * 266.44660 * 13 11 10 36 36 H 0.97003 * 119.99534 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47113 * 59.99960 * 23 22 11 38 38 H 1.09005 * 109.46812 * 179.97438 * 23 22 11 39 39 H 1.09000 * 109.47163 * 299.99771 * 23 22 11 40 40 H 1.08993 * 109.46939 * 60.00095 * 24 22 11 41 41 H 1.09000 * 109.46546 * 180.02562 * 24 22 11 42 42 H 1.08999 * 109.47029 * 299.99943 * 24 22 11 43 43 H 1.09003 * 110.36440 * 274.75139 * 25 9 7 44 44 H 1.08997 * 110.36491 * 37.06724 * 25 9 7 45 45 H 1.08002 * 126.45941 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 0.0005 5 7 3.9594 2.6782 0.0001 6 6 5.3039 2.4524 0.0015 7 6 6.3630 3.4771 0.0021 8 8 7.5324 3.1429 0.0038 9 7 6.0358 4.7846 0.0007 10 6 4.6687 5.3256 -0.0008 11 6 4.7850 6.8643 -0.0284 12 1 4.7106 7.2747 0.9787 13 7 3.7640 7.4456 -0.9034 14 6 2.5169 7.7228 -0.4103 15 1 2.2860 7.5125 0.6235 16 6 1.5495 8.2742 -1.2392 17 7 1.8309 8.5301 -2.4993 18 14 -0.1519 8.6517 -0.5668 19 1 -0.2121 8.2735 0.8680 20 1 -0.4287 10.1039 -0.7076 21 1 -1.1670 7.8784 -1.3260 22 6 6.2041 7.0951 -0.6118 23 6 6.1892 7.0116 -2.1395 24 6 6.7781 8.4341 -0.1442 25 6 6.9892 5.9090 0.0070 26 6 5.4846 1.1054 0.0033 27 8 4.2630 0.5428 0.0069 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 4.1337 4.9785 -0.8848 34 1 4.1439 5.0096 0.9006 35 1 3.9712 7.6343 -1.8320 36 1 1.1548 8.9150 -3.0786 37 1 5.5192 7.7732 -2.5385 38 1 7.1963 7.1776 -2.5222 39 1 5.8416 6.0251 -2.4460 40 1 6.8420 8.4418 0.9439 41 1 7.7730 8.5707 -0.5680 42 1 6.1280 9.2437 -0.4757 43 1 7.2929 6.1431 1.0274 44 1 7.8601 5.6712 -0.6037 45 1 6.4309 0.5848 0.0051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996010834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:39 Heat of formation + Delta-G solvation = -45.830135 kcal Electronic energy + Delta-G solvation = -28277.448999 eV Core-core repulsion = 24297.234061 eV Total energy + Delta-G solvation = -3980.214937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.55506 -41.29454 -40.01671 -39.25709 -36.16025 -35.82376 -34.46432 -32.88685 -32.62923 -30.67552 -29.16813 -28.30844 -27.90263 -25.83691 -25.03679 -24.46525 -23.31205 -22.71772 -21.10429 -20.19679 -19.34797 -19.12693 -18.67358 -18.25768 -17.44132 -17.19943 -16.78560 -16.57837 -16.26539 -15.97805 -15.70332 -15.43306 -14.96183 -14.63901 -14.44824 -14.25336 -13.95206 -13.84492 -13.60044 -13.52338 -13.37672 -12.98482 -12.86310 -12.79247 -12.69610 -12.59006 -12.49057 -12.11473 -12.04040 -11.92875 -11.81529 -11.67142 -11.49893 -11.41581 -11.23412 -10.87670 -9.91531 -9.56246 -9.00435 -7.91595 -5.19630 -0.00334 0.82628 0.91004 1.48562 1.49557 1.59150 1.66054 1.93006 2.14473 2.58652 3.12890 3.39834 3.57304 3.71229 3.82474 3.86006 3.90086 3.93541 4.03385 4.19035 4.23323 4.32923 4.37817 4.44909 4.49283 4.59318 4.68945 4.80194 4.82674 4.83272 4.86742 5.00728 5.06594 5.11490 5.15897 5.17458 5.28732 5.29468 5.45140 5.54492 5.58031 5.64933 6.30115 6.36021 6.47919 6.96432 7.38439 8.11126 8.36122 9.31968 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.005091 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.527911 B = 5499.116341 C = 8436.971598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 O -0.263 6.263 4 C 0.380 3.620 5 N -0.483 5.483 6 C -0.080 4.080 7 C 0.611 3.389 8 O -0.563 6.563 9 N -0.596 5.596 10 C 0.112 3.888 11 C 0.170 3.830 12 H 0.065 0.935 13 N -0.720 5.720 14 C -0.235 4.235 15 H 0.074 0.926 16 C -0.070 4.070 17 N -0.968 5.968 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.292 1.292 21 H -0.297 1.297 22 C -0.078 4.078 23 C -0.125 4.125 24 C -0.123 4.123 25 C 0.120 3.880 26 C 0.032 3.968 27 O -0.214 6.214 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.381 0.619 36 H 0.250 0.750 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 -17.479 6.201 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.172 6.172 4 C 0.133 3.867 5 N -0.229 5.229 6 C -0.198 4.198 7 C 0.400 3.600 8 O -0.445 6.445 9 N -0.326 5.326 10 C -0.014 4.014 11 C 0.059 3.941 12 H 0.083 0.917 13 N -0.361 5.361 14 C -0.367 4.367 15 H 0.092 0.908 16 C -0.262 4.262 17 N -0.618 5.618 18 Si 0.796 3.204 19 H -0.192 1.192 20 H -0.220 1.220 21 H -0.224 1.224 22 C -0.079 4.079 23 C -0.182 4.182 24 C -0.180 4.180 25 C -0.001 4.001 26 C -0.040 4.040 27 O -0.104 6.104 28 H 0.135 0.865 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.216 0.784 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 6.464 -17.028 6.325 19.281 hybrid contribution -1.141 -0.403 -0.351 1.260 sum 5.323 -17.432 5.974 19.180 Atomic orbital electron populations 1.21875 0.90132 1.05125 1.03607 1.23441 0.97787 0.77706 1.04243 1.86465 1.08215 1.33476 1.89000 1.23404 0.84148 0.81489 0.97646 1.71347 1.04837 1.22596 1.24076 1.21604 0.89870 0.94914 1.13431 1.16480 0.86153 0.80774 0.76599 1.90767 1.18438 1.81215 1.54040 1.48292 1.09680 1.04719 1.69898 1.22817 0.81331 0.96462 1.00830 1.21470 0.88563 0.89558 0.94495 0.91666 1.42625 1.09353 1.73322 1.10821 1.19629 0.89445 1.32346 0.95301 0.90817 1.25446 1.01775 1.02865 0.96137 1.69812 1.34701 1.51418 1.05917 0.85171 0.80456 0.76897 0.77866 1.19194 1.21959 1.22448 1.21987 0.94307 0.95733 0.95891 1.21568 1.01981 1.00565 0.94122 1.21608 1.00885 0.93918 1.01624 1.22524 0.91993 0.83753 1.01865 1.25600 0.86675 0.91676 1.00077 1.84413 1.15974 1.38503 1.71550 0.86530 0.91917 0.91525 0.89251 0.89642 0.93154 0.92839 0.78357 0.94115 0.93323 0.90380 0.94727 0.91303 0.90363 0.93445 0.89363 0.89575 0.70997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.04 0.66 6.38 71.98 0.46 1.12 16 3 O -0.26 -7.09 10.19 -64.17 -0.65 -7.74 16 4 C 0.38 11.13 8.98 130.43 1.17 12.31 16 5 N -0.48 -17.13 8.87 -419.39 -3.72 -20.85 16 6 C -0.08 -2.54 6.82 40.31 0.28 -2.26 16 7 C 0.61 21.04 7.84 86.65 0.68 21.72 16 8 O -0.56 -19.99 17.14 -4.10 -0.07 -20.06 16 9 N -0.60 -20.73 3.31 -815.28 -2.70 -23.43 16 10 C 0.11 4.45 4.95 86.73 0.43 4.88 16 11 C 0.17 6.79 2.84 46.18 0.13 6.92 16 12 H 0.07 2.59 8.02 -2.38 -0.02 2.57 16 13 N -0.72 -35.96 5.08 -317.32 -1.61 -37.57 16 14 C -0.24 -13.03 9.98 84.03 0.84 -12.19 16 15 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 16 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 17 N -0.97 -59.16 13.06 21.65 0.28 -58.87 16 18 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 22 C -0.08 -2.50 0.87 -50.71 -0.04 -2.54 16 23 C -0.12 -4.23 7.94 71.98 0.57 -3.66 16 24 C -0.12 -3.33 8.68 71.98 0.62 -2.71 16 25 C 0.12 3.56 5.85 86.93 0.51 4.06 16 26 C 0.03 0.73 11.93 67.28 0.80 1.53 16 27 O -0.21 -4.87 10.20 18.84 0.19 -4.68 16 28 H 0.12 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 2.34 7.52 -2.38 -0.02 2.32 16 34 H 0.05 2.22 7.75 -2.39 -0.02 2.20 16 35 H 0.38 20.24 5.26 -92.71 -0.49 19.75 16 36 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.05 1.89 6.34 -2.39 -0.02 1.88 16 38 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.03 1.28 7.91 -2.39 -0.02 1.26 16 40 H 0.07 1.66 8.07 -2.39 -0.02 1.64 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 2.29 7.99 -2.39 -0.02 2.27 16 44 H 0.09 2.41 7.95 -2.39 -0.02 2.39 16 45 H 0.27 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -72.66 373.73 1.92 -70.75 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.51 Total: 29.35 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 7.65 Total: 24.47 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -7.75 Total: -140.72 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.53 Total: -32.48 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -72.66 1.92 -70.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996010834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.915 kcal (2) G-P(sol) polarization free energy of solvation -72.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds