Wall clock time and date at job start Tue Mar 31 2020 14:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47023 * 2 1 4 4 C 1.35727 * 116.99770 * 179.97438 * 3 2 1 5 5 C 1.41858 * 126.78435 * 180.02562 * 4 3 2 6 6 C 1.36661 * 103.80814 * 180.24475 * 5 4 3 7 7 C 1.47549 * 126.87456 * 179.74470 * 6 5 4 8 8 O 1.21573 * 119.99910 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99970 * 179.97438 * 7 6 5 10 10 C 1.47026 * 125.64449 * 0.02562 * 9 7 6 11 11 C 1.54330 * 107.26662 * 181.02150 * 10 9 7 12 12 H 1.09005 * 110.71694 * 140.56130 * 11 10 9 13 13 N 1.46500 * 110.72052 * 263.65272 * 11 10 9 14 14 C 1.36943 * 119.99644 * 273.54764 * 13 11 10 15 15 H 1.07994 * 120.00718 * 0.02562 * 14 13 11 16 16 C 1.38817 * 119.99299 * 180.02562 * 14 13 11 17 17 N 1.31614 * 119.99556 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00289 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46943 * 90.00026 * 18 16 14 20 20 H 1.48498 * 109.47001 * 209.99794 * 18 16 14 21 21 H 1.48501 * 109.47143 * 330.00066 * 18 16 14 22 22 C 1.55156 * 102.94340 * 22.19726 * 11 10 9 23 23 C 1.53001 * 111.00715 * 82.56902 * 22 11 10 24 24 C 1.53004 * 111.00171 * 206.38556 * 22 11 10 25 25 C 1.47419 * 125.64991 * 179.71360 * 9 7 6 26 26 O 1.34659 * 106.24637 * 359.62674 * 6 5 4 27 27 N 1.20881 * 111.62940 * 0.40268 * 26 6 5 28 28 H 1.09004 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47402 * 299.99637 * 1 2 3 30 30 H 1.08997 * 109.47164 * 60.00211 * 1 2 3 31 31 H 1.09002 * 109.46911 * 240.00181 * 2 1 3 32 32 H 1.09001 * 109.46774 * 120.00415 * 2 1 3 33 33 H 1.08002 * 128.09104 * 359.97438 * 5 4 3 34 34 H 1.08994 * 109.88575 * 300.44188 * 10 9 7 35 35 H 1.09004 * 109.88429 * 61.45321 * 10 9 7 36 36 H 0.96994 * 120.00114 * 93.55332 * 13 11 10 37 37 H 0.97003 * 120.00411 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46796 * 59.99786 * 23 22 11 39 39 H 1.08995 * 109.46747 * 180.02562 * 23 22 11 40 40 H 1.08997 * 109.46839 * 300.00323 * 23 22 11 41 41 H 1.08997 * 109.46999 * 59.99419 * 24 22 11 42 42 H 1.09004 * 109.46833 * 179.97438 * 24 22 11 43 43 H 1.09000 * 109.46633 * 299.99966 * 24 22 11 44 44 H 1.09002 * 110.36586 * 274.74727 * 25 9 7 45 45 H 1.08998 * 110.36389 * 37.07215 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0452 2.7627 0.0012 6 6 5.3624 2.3987 -0.0041 7 6 6.5302 3.3005 -0.0112 8 8 6.3678 4.5054 -0.0132 9 7 7.7769 2.7886 -0.0154 10 6 8.1157 1.3579 -0.0141 11 6 9.6552 1.2517 0.0061 12 1 9.9771 0.4382 0.6562 13 7 10.1799 1.0680 -1.3494 14 6 10.2741 -0.1899 -1.8824 15 1 9.9613 -1.0465 -1.3038 16 6 10.7718 -0.3640 -3.1665 17 7 10.8628 -1.5730 -3.6787 18 14 11.3122 1.1176 -4.1676 19 1 12.7503 1.3881 -3.9145 20 1 11.1074 0.8404 -5.6121 21 1 10.5086 2.3021 -3.7721 22 6 10.0906 2.6233 0.5862 23 6 10.0132 2.6219 2.1143 24 6 11.4960 2.9983 0.1115 25 6 9.0267 3.5704 -0.0285 26 8 5.3812 1.0522 0.0010 27 7 4.2638 0.5910 0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.6292 3.7594 0.0009 34 1 7.6994 0.8791 0.8722 35 1 7.7208 0.8826 -0.9120 36 1 10.4606 1.8373 -1.8692 37 1 11.2109 -1.6948 -4.5759 38 1 10.6724 1.8496 2.5107 39 1 10.3233 3.5952 2.4946 40 1 8.9884 2.4200 2.4259 41 1 11.5076 3.0595 -0.9767 42 1 11.7760 3.9640 0.5325 43 1 12.2052 2.2387 0.4403 44 1 9.2972 3.8362 -1.0504 45 1 8.9197 4.4670 0.5820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996054485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:39 Heat of formation + Delta-G solvation = 16.313073 kcal Electronic energy + Delta-G solvation = -28197.977187 eV Core-core repulsion = 24220.456981 eV Total energy + Delta-G solvation = -3977.520206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.02722 -40.20975 -39.16608 -38.20516 -34.26301 -33.63146 -33.41028 -31.94142 -31.32668 -31.13612 -28.38573 -27.05614 -26.83403 -24.48820 -23.75997 -23.45489 -22.62305 -21.35390 -20.42855 -19.20077 -18.04243 -17.96749 -17.64082 -16.99274 -16.22434 -16.16295 -15.84477 -15.40450 -14.83163 -14.63369 -14.48321 -13.98837 -13.80136 -13.62762 -13.34851 -13.16966 -12.97883 -12.83366 -12.56297 -12.30022 -12.16748 -12.15525 -11.88047 -11.74820 -11.43675 -11.40696 -11.32236 -11.03226 -10.71623 -10.61979 -10.36931 -10.27540 -9.97232 -9.94640 -9.63598 -9.43887 -9.06717 -8.53849 -7.40771 -5.85335 -3.22840 0.71380 2.00121 2.42499 2.52053 2.98253 3.24871 3.31502 3.33443 3.40685 3.97342 4.43790 4.51199 4.56919 4.60506 4.70140 4.80456 4.87538 4.93842 4.99465 5.07310 5.21193 5.30794 5.43410 5.44886 5.48117 5.53562 5.59897 5.67133 5.69234 5.78505 5.90827 5.96484 6.04949 6.09349 6.15091 6.23419 6.32935 6.42811 6.60658 6.62967 6.78140 7.45074 7.83142 7.89714 8.06434 8.33129 9.09939 9.82126 9.99939 11.32340 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.003757 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.763083 B = 7451.760533 C = 8784.132810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.203 3.797 5 C -0.162 4.162 6 C -0.046 4.046 7 C 0.613 3.387 8 O -0.524 6.524 9 N -0.589 5.589 10 C 0.065 3.935 11 C 0.186 3.814 12 H 0.083 0.917 13 N -0.736 5.736 14 C -0.250 4.250 15 H 0.094 0.906 16 C 0.011 3.989 17 N -0.928 5.928 18 Si 0.878 3.122 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.091 4.091 23 C -0.130 4.130 24 C -0.127 4.127 25 C 0.119 3.881 26 O 0.129 5.871 27 N -0.389 5.389 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.188 0.812 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.363 0.637 37 H 0.261 0.739 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.375 7.647 11.288 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.190 6.190 4 C 0.006 3.994 5 C -0.185 4.185 6 C -0.112 4.112 7 C 0.398 3.602 8 O -0.402 6.402 9 N -0.321 5.321 10 C -0.060 4.060 11 C 0.075 3.925 12 H 0.101 0.899 13 N -0.379 5.379 14 C -0.379 4.379 15 H 0.112 0.888 16 C -0.185 4.185 17 N -0.575 5.575 18 Si 0.708 3.292 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.093 4.093 23 C -0.188 4.188 24 C -0.185 4.185 25 C -0.003 4.003 26 O 0.062 5.938 27 N -0.112 5.112 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.205 0.795 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.813 6.896 11.209 18.367 hybrid contribution -0.004 1.382 -1.036 1.727 sum -12.816 8.278 10.174 18.338 Atomic orbital electron populations 1.21793 0.92178 1.03228 1.03591 1.22850 0.95843 0.80527 1.02670 1.86195 1.13009 1.30320 1.89438 1.21807 0.85847 0.90457 1.01278 1.22097 0.90005 0.99163 1.07190 1.23994 0.96292 0.84444 1.06476 1.16065 0.80171 0.85642 0.78291 1.90847 1.84568 1.12772 1.52008 1.48332 1.04430 1.09896 1.69398 1.23477 1.00944 0.78965 1.02620 1.21189 0.88778 0.94497 0.88082 0.89921 1.42816 1.76432 1.06159 1.12451 1.19045 1.36521 0.84260 0.98116 0.88849 1.24648 1.00938 0.95853 0.97070 1.69687 1.51364 1.19711 1.16744 0.86660 0.78839 0.83265 0.80401 1.20843 1.21667 1.20344 1.22111 0.95078 0.96301 0.95810 1.21681 1.01942 1.01843 0.93308 1.21604 0.94583 1.00810 1.01521 1.22459 0.81999 0.94540 1.01295 1.85106 1.22434 1.18492 1.67798 1.74042 0.90547 1.22246 1.24346 0.89918 0.91406 0.91352 0.91365 0.91478 0.79455 0.91447 0.89382 0.80201 0.92929 0.91883 0.92568 0.92620 0.92213 0.93025 0.91410 0.90901 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.55 6.38 37.16 0.24 0.79 16 3 O -0.28 -3.52 10.21 -18.89 -0.19 -3.71 16 4 C 0.20 2.84 8.00 -16.72 -0.13 2.70 16 5 C -0.16 -2.17 10.97 -38.77 -0.43 -2.60 16 6 C -0.05 -0.68 7.08 -36.36 -0.26 -0.94 16 7 C 0.61 9.81 7.85 -12.46 -0.10 9.71 16 8 O -0.52 -9.29 17.16 5.30 0.09 -9.20 16 9 N -0.59 -9.14 3.31 -171.60 -0.57 -9.71 16 10 C 0.07 1.05 5.00 -3.06 -0.02 1.03 16 11 C 0.19 3.13 2.85 -66.09 -0.19 2.94 16 12 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16 13 N -0.74 -15.61 4.42 -51.65 -0.23 -15.84 16 14 C -0.25 -6.50 10.46 -15.05 -0.16 -6.66 16 15 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 16 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 17 N -0.93 -28.05 13.97 55.49 0.78 -27.28 16 18 Si 0.88 21.20 27.73 -169.99 -4.71 16.48 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 22 C -0.09 -1.24 0.84 -152.23 -0.13 -1.37 16 23 C -0.13 -1.46 8.59 37.16 0.32 -1.14 16 24 C -0.13 -1.70 8.22 37.16 0.31 -1.40 16 25 C 0.12 1.71 5.83 -2.41 -0.01 1.70 16 26 O 0.13 1.99 9.00 15.51 0.14 2.13 16 27 N -0.39 -5.94 11.50 30.47 0.35 -5.58 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.19 2.12 8.06 -52.49 -0.42 1.69 16 34 H 0.07 0.97 7.72 -51.93 -0.40 0.57 16 35 H 0.09 1.65 7.73 -51.93 -0.40 1.25 16 36 H 0.36 7.72 3.98 -40.82 -0.16 7.55 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 41 H 0.06 0.90 6.39 -51.93 -0.33 0.57 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.12 7.99 -51.93 -0.41 0.71 16 45 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -30.96 371.28 -5.79 -36.75 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.77 Total: 6.02 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.27 Total: 4.35 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.33 Total: -58.42 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.04 Total: -10.78 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.71 Total: 16.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.96 -5.79 -36.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996054485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.061 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds