Wall clock time and date at job start Tue Mar 31 2020 14:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35731 * 116.99815 * 180.02562 * 3 2 1 5 5 C 1.41856 * 126.78767 * 180.02562 * 4 3 2 6 6 C 1.36666 * 103.81088 * 180.02562 * 5 4 3 7 7 C 1.47542 * 126.87380 * 180.02562 * 6 5 4 8 8 O 1.21573 * 120.00533 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99384 * 179.97438 * 7 6 5 10 10 C 1.47018 * 125.65039 * 0.02629 * 9 7 6 11 11 C 1.54324 * 107.27026 * 181.02142 * 10 9 7 12 12 H 1.09003 * 110.72279 * 263.82855 * 11 10 9 13 13 N 1.46495 * 110.72326 * 140.55753 * 11 10 9 14 14 C 1.36936 * 120.00252 * 86.45041 * 13 11 10 15 15 H 1.07994 * 119.99822 * 0.02562 * 14 13 11 16 16 C 1.38818 * 120.00066 * 180.02562 * 14 13 11 17 17 N 1.31611 * 119.99956 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99982 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47261 * 90.00437 * 18 16 14 20 20 H 1.48498 * 109.47541 * 210.00533 * 18 16 14 21 21 H 1.48504 * 109.47456 * 330.00513 * 18 16 14 22 22 C 1.55159 * 102.94393 * 22.18848 * 11 10 9 23 23 C 1.53009 * 110.99794 * 82.57225 * 22 11 10 24 24 C 1.52992 * 111.00600 * 206.38557 * 22 11 10 25 25 C 1.47426 * 125.64299 * 179.71256 * 9 7 6 26 26 O 1.34659 * 106.24229 * 359.97438 * 6 5 4 27 27 N 1.20873 * 111.63288 * 359.71395 * 26 6 5 28 28 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 33 33 H 1.08001 * 128.08883 * 0.02562 * 5 4 3 34 34 H 1.09001 * 109.88333 * 300.43567 * 10 9 7 35 35 H 1.09002 * 109.88241 * 61.60237 * 10 9 7 36 36 H 0.97005 * 119.99961 * 266.45740 * 13 11 10 37 37 H 0.96996 * 120.00417 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47288 * 60.00449 * 23 22 11 39 39 H 1.08998 * 109.46407 * 179.97438 * 23 22 11 40 40 H 1.08998 * 109.47147 * 300.00017 * 23 22 11 41 41 H 1.09002 * 109.47146 * 60.00316 * 24 22 11 42 42 H 1.08998 * 109.47295 * 180.02562 * 24 22 11 43 43 H 1.09003 * 109.47553 * 299.99963 * 24 22 11 44 44 H 1.08992 * 110.37162 * 274.74878 * 25 9 7 45 45 H 1.09003 * 110.36534 * 37.07594 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0451 2.7628 -0.0001 6 6 5.3624 2.3989 -0.0016 7 6 6.5301 3.3007 -0.0013 8 8 6.3678 4.5055 -0.0002 9 7 7.7769 2.7887 -0.0024 10 6 8.1158 1.3581 -0.0044 11 6 9.6551 1.2518 0.0213 12 1 10.0496 1.1214 -0.9865 13 7 10.0846 0.1558 0.8933 14 6 10.1791 -1.1171 0.3972 15 1 9.9373 -1.3129 -0.6369 16 6 10.5855 -2.1557 1.2237 17 7 10.6768 -3.3790 0.7468 18 14 11.0043 -1.8169 3.0123 19 1 9.7825 -1.9647 3.8434 20 1 12.0348 -2.7828 3.4710 21 1 11.5286 -0.4338 3.1446 22 6 10.0884 2.6216 0.6073 23 6 10.0052 2.6154 2.1351 24 6 11.4954 2.9981 0.1391 25 6 9.0267 3.5706 -0.0083 26 8 5.3812 1.0524 -0.0021 27 7 4.2639 0.5912 0.0044 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.6292 3.7595 0.0010 34 1 7.6962 0.8765 0.8789 35 1 7.7265 0.8862 -0.9066 36 1 10.3020 0.3317 1.8222 37 1 10.9611 -4.1047 1.3241 38 1 10.6628 1.8420 2.5317 39 1 10.3146 3.5872 2.5196 40 1 8.9792 2.4126 2.4423 41 1 11.5112 3.0627 -0.9489 42 1 11.7742 3.9620 0.5648 43 1 12.2035 2.2376 0.4682 44 1 9.3011 3.8397 -1.0282 45 1 8.9174 4.4653 0.6047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996054487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:42 Heat of formation + Delta-G solvation = 17.687920 kcal Electronic energy + Delta-G solvation = -28147.148271 eV Core-core repulsion = 24169.687683 eV Total energy + Delta-G solvation = -3977.460588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.03021 -40.22606 -39.15467 -38.23128 -34.44272 -33.62765 -33.36950 -31.94776 -31.32579 -31.16015 -28.10359 -27.23743 -26.90717 -24.47771 -23.82628 -23.45507 -22.72615 -21.20607 -20.39355 -19.12840 -18.05833 -17.99264 -17.69125 -16.98529 -16.26034 -16.19025 -15.94563 -15.45295 -14.73963 -14.66181 -14.39964 -13.93945 -13.82166 -13.61475 -13.43009 -13.33881 -12.98635 -12.76405 -12.60878 -12.42840 -12.27965 -12.14810 -11.74044 -11.48386 -11.43695 -11.39571 -11.37516 -11.04334 -10.70313 -10.64208 -10.39401 -10.31263 -10.01585 -9.95601 -9.62110 -9.43166 -9.05454 -8.58919 -7.42252 -5.85575 -3.23451 0.69887 2.00295 2.42435 2.50151 2.93866 3.20919 3.29655 3.33222 3.40079 3.97409 4.42940 4.50550 4.57722 4.62270 4.70910 4.78648 4.88231 4.94340 4.95312 5.07412 5.29208 5.33466 5.41969 5.44858 5.52607 5.55782 5.58261 5.63333 5.68189 5.71041 5.84573 5.92244 6.07112 6.13317 6.16879 6.25248 6.36488 6.43020 6.49107 6.69864 6.78792 7.38854 7.80173 7.89819 8.05464 8.33049 9.09753 9.81624 9.99322 11.32142 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.003974 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.116916 B = 7043.758875 C = 8970.332937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.283 6.283 4 C 0.201 3.799 5 C -0.161 4.161 6 C -0.050 4.050 7 C 0.614 3.386 8 O -0.524 6.524 9 N -0.595 5.595 10 C 0.067 3.933 11 C 0.188 3.812 12 H 0.078 0.922 13 N -0.734 5.734 14 C -0.252 4.252 15 H 0.093 0.907 16 C 0.012 3.988 17 N -0.928 5.928 18 Si 0.878 3.122 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.090 4.090 23 C -0.138 4.138 24 C -0.130 4.130 25 C 0.119 3.881 26 O 0.132 5.868 27 N -0.387 5.387 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.188 0.812 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.367 0.633 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 12.789 -1.229 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.190 6.190 4 C 0.004 3.996 5 C -0.183 4.183 6 C -0.117 4.117 7 C 0.400 3.600 8 O -0.401 6.401 9 N -0.327 5.327 10 C -0.058 4.058 11 C 0.076 3.924 12 H 0.096 0.904 13 N -0.378 5.378 14 C -0.382 4.382 15 H 0.111 0.889 16 C -0.184 4.184 17 N -0.574 5.574 18 Si 0.708 3.292 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.091 4.091 23 C -0.195 4.195 24 C -0.188 4.188 25 C -0.003 4.003 26 O 0.064 5.936 27 N -0.108 5.108 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.206 0.794 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.203 0.797 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.299 12.057 -1.351 17.277 hybrid contribution -0.087 0.415 1.312 1.379 sum -12.387 12.473 -0.039 17.579 Atomic orbital electron populations 1.21791 0.92171 1.03244 1.03557 1.22857 0.95835 0.80490 1.02742 1.86191 1.12987 1.30353 1.89463 1.21827 0.85891 0.90440 1.01408 1.22095 0.89991 0.99145 1.07115 1.23991 0.96271 0.84572 1.06821 1.16076 0.80175 0.85622 0.78157 1.90848 1.84599 1.12763 1.51913 1.48397 1.04479 1.10066 1.69717 1.23510 1.01061 0.78227 1.02994 1.21176 0.89317 0.86442 0.95439 0.90449 1.42851 1.80431 1.04772 1.09717 1.19074 1.39206 0.82455 0.97458 0.88898 1.24648 1.01091 0.95221 0.97487 1.69685 1.53072 0.99280 1.35409 0.86676 0.78293 0.77334 0.86902 1.20935 1.21581 1.20212 1.22082 0.94881 0.95957 0.96222 1.21718 1.02272 1.01632 0.93868 1.21659 0.94872 1.01240 1.01002 1.22467 0.81835 0.94729 1.01241 1.85140 1.22421 1.18381 1.67622 1.74079 0.90538 1.22204 1.24027 0.91399 0.91388 0.89903 0.91390 0.91390 0.79449 0.90055 0.90942 0.79735 0.92910 0.91603 0.92643 0.92485 0.92323 0.92850 0.91321 0.90613 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.56 6.38 37.16 0.24 0.80 16 3 O -0.28 -3.55 10.21 -18.90 -0.19 -3.74 16 4 C 0.20 2.83 8.00 -16.72 -0.13 2.69 16 5 C -0.16 -2.12 10.97 -38.77 -0.43 -2.55 16 6 C -0.05 -0.73 7.08 -36.36 -0.26 -0.99 16 7 C 0.61 9.37 7.85 -12.46 -0.10 9.27 16 8 O -0.52 -8.80 17.16 5.30 0.09 -8.71 16 9 N -0.59 -8.70 3.31 -171.61 -0.57 -9.27 16 10 C 0.07 1.09 5.01 -3.07 -0.02 1.08 16 11 C 0.19 3.20 2.85 -66.10 -0.19 3.01 16 12 H 0.08 1.33 8.02 -51.93 -0.42 0.92 16 13 N -0.73 -15.63 4.88 -51.65 -0.25 -15.89 16 14 C -0.25 -6.59 10.46 -15.06 -0.16 -6.75 16 15 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 16 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 17 N -0.93 -27.99 13.97 55.49 0.78 -27.22 16 18 Si 0.88 21.03 27.73 -169.99 -4.71 16.31 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 22 C -0.09 -1.23 0.87 -152.24 -0.13 -1.37 16 23 C -0.14 -1.92 7.94 37.16 0.30 -1.63 16 24 C -0.13 -1.58 8.68 37.15 0.32 -1.26 16 25 C 0.12 1.54 5.85 -2.41 -0.01 1.52 16 26 O 0.13 2.09 9.00 15.51 0.14 2.23 16 27 N -0.39 -6.06 11.50 30.47 0.35 -5.71 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.08 1.45 7.61 -51.93 -0.40 1.05 16 35 H 0.07 1.18 7.83 -51.93 -0.41 0.77 16 36 H 0.37 7.73 3.12 -40.82 -0.13 7.60 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.84 7.91 -51.93 -0.41 0.42 16 41 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 0.88 7.99 -51.93 -0.41 0.46 16 45 H 0.08 1.00 7.95 -51.93 -0.41 0.59 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -30.79 370.63 -5.80 -36.59 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.73 Total: 6.42 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.28 Total: 3.40 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.31 Total: -58.08 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.04 Total: -10.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.79 -5.80 -36.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996054487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.277 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds