Wall clock time and date at job start Tue Mar 31 2020 14:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46697 * 2 1 4 4 N 1.46500 * 109.47386 * 120.00282 * 2 1 3 5 5 C 1.34780 * 119.99984 * 275.00203 * 4 2 1 6 6 O 1.21499 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.48201 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.36322 * 126.38340 * 179.71182 * 7 5 4 9 9 C 1.42335 * 104.00675 * 179.97438 * 8 7 5 10 10 O 1.21981 * 127.15008 * 180.08431 * 9 8 7 11 11 N 1.34826 * 105.70628 * 0.33138 * 9 8 7 12 12 C 1.46503 * 124.57109 * 179.81181 * 11 9 8 13 13 O 1.20924 * 110.86725 * 359.78788 * 11 9 8 14 14 C 1.52998 * 109.47241 * 240.00744 * 2 1 3 15 15 C 1.53041 * 109.46200 * 180.02562 * 14 2 1 16 16 C 1.53189 * 109.31425 * 178.61144 * 15 14 2 17 17 N 1.46920 * 108.77517 * 54.63211 * 16 15 14 18 18 C 1.36935 * 120.62752 * 126.41442 * 17 16 15 19 19 H 1.08004 * 119.99946 * 207.66610 * 18 17 16 20 20 C 1.38814 * 120.00466 * 27.66589 * 18 17 16 21 21 N 1.31620 * 119.99469 * 17.36277 * 20 18 17 22 22 Si 1.86796 * 120.00357 * 197.36767 * 20 18 17 23 23 H 1.48499 * 109.47342 * 59.99674 * 22 20 18 24 24 H 1.48508 * 109.47262 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46967 * 299.99724 * 22 20 18 26 26 C 1.46921 * 118.74386 * 306.39498 * 17 16 15 27 27 C 1.53037 * 109.46521 * 59.99395 * 14 2 1 28 28 H 1.09001 * 109.47380 * 59.99259 * 1 2 3 29 29 H 1.09004 * 109.47362 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47242 * 299.99461 * 1 2 3 31 31 H 0.96991 * 119.99949 * 94.99782 * 4 2 1 32 32 H 1.07996 * 127.99290 * 0.02562 * 8 7 5 33 33 H 1.09003 * 109.47465 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.46589 * 299.99689 * 12 11 9 35 35 H 1.08994 * 109.47146 * 59.99770 * 12 11 9 36 36 H 1.09004 * 109.45427 * 300.02348 * 14 2 1 37 37 H 1.08997 * 109.49693 * 298.56848 * 15 14 2 38 38 H 1.09005 * 109.49629 * 58.65780 * 15 14 2 39 39 H 1.09006 * 109.58739 * 294.84489 * 16 15 14 40 40 H 1.08997 * 109.58871 * 174.42624 * 16 15 14 41 41 H 0.97006 * 119.99970 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.58218 * 293.82018 * 26 17 16 43 43 H 1.08997 * 109.58845 * 173.39648 * 26 17 16 44 44 H 1.08999 * 109.49634 * 301.34500 * 27 14 2 45 45 H 1.09009 * 109.49498 * 61.43523 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1604 2.4119 7 6 2.6406 -0.7172 3.5673 8 6 2.8251 -0.1663 4.8005 9 6 3.3047 -1.2474 5.5925 10 8 3.6055 -1.2181 6.7743 11 7 3.3628 -2.3093 4.7637 12 6 3.8099 -3.6477 5.1576 13 8 2.9956 -2.0083 3.6516 14 6 2.0400 -0.7211 -1.2493 15 6 3.5704 -0.7215 -1.2487 16 6 4.0773 -1.4743 -2.4829 17 7 3.4745 -0.8766 -3.6820 18 6 4.2602 -0.4510 -4.7196 19 1 3.9212 0.3493 -5.3607 20 6 5.4924 -1.0481 -4.9475 21 7 5.7653 -2.2191 -4.4121 22 14 6.7634 -0.1897 -6.0140 23 1 7.1071 1.1244 -5.4138 24 1 7.9856 -1.0289 -6.1000 25 1 6.2081 0.0179 -7.3755 26 6 2.0127 -0.7446 -3.7470 27 6 1.5297 0.0005 -2.4987 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.2490 -1.6317 1.1525 32 1 2.6475 0.8542 5.1061 33 1 3.7589 -4.3156 4.2977 34 1 4.8378 -3.5962 5.5167 35 1 3.1663 -4.0268 5.9513 36 1 1.6762 -1.7486 -1.2494 37 1 3.9345 0.3056 -1.2740 38 1 3.9337 -1.2146 -0.3471 39 1 3.7907 -2.5237 -2.4141 40 1 5.1627 -1.3929 -2.5402 41 1 6.6265 -2.6362 -4.5710 42 1 1.5576 -1.7345 -3.7813 43 1 1.7358 -0.1818 -4.6384 44 1 0.4400 0.0216 -2.4870 45 1 1.9136 1.0207 -2.5119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997051562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:57 Heat of formation + Delta-G solvation = 26.784373 kcal Electronic energy + Delta-G solvation = -27834.483768 eV Core-core repulsion = 23857.417632 eV Total energy + Delta-G solvation = -3977.066136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.38803 -40.24078 -38.40603 -38.13586 -35.59026 -34.64419 -33.08380 -32.51556 -31.22678 -30.31791 -29.08417 -28.16945 -25.57328 -24.52877 -23.73304 -22.78549 -22.05547 -20.76851 -20.62856 -19.35748 -18.82135 -18.68617 -17.52317 -16.77278 -16.46722 -15.66439 -15.31390 -15.22850 -14.85976 -14.44373 -14.16567 -14.08998 -13.94481 -13.70921 -13.58731 -13.47957 -13.42266 -13.27883 -13.05709 -12.48136 -12.36022 -11.80207 -11.63592 -11.31165 -11.03857 -10.80822 -10.70476 -10.52592 -10.37833 -10.31235 -10.26756 -10.26353 -9.94866 -9.63398 -9.58253 -9.23272 -8.82751 -8.50018 -6.71570 -5.82860 -3.24587 0.25948 1.27543 2.30468 2.48582 2.74378 3.12017 3.36086 3.42001 3.43599 4.25894 4.38111 4.46917 4.68984 4.72700 4.74982 4.83177 5.02058 5.05771 5.19578 5.32214 5.40577 5.49634 5.51652 5.55037 5.60109 5.70016 5.82362 5.97086 5.98848 6.15570 6.16810 6.26396 6.45728 6.51796 6.60534 6.69150 6.75829 6.92181 7.02748 7.31099 7.33227 7.59645 7.64289 7.69817 7.75904 8.41329 9.17815 9.81448 10.37469 11.25598 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.002916 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.250175 B = 9599.662446 C =10617.795872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.093 0.907 4 N -0.698 5.698 5 C 0.601 3.399 6 O -0.498 6.498 7 C 0.035 3.965 8 C -0.239 4.239 9 C 0.480 3.520 10 O -0.523 6.523 11 N -0.452 5.452 12 C 0.108 3.892 13 O -0.002 6.002 14 C -0.085 4.085 15 C -0.136 4.136 16 C 0.172 3.828 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.146 3.854 27 C -0.126 4.126 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.407 0.593 32 H 0.193 0.807 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.785 -2.288 15.054 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.111 0.889 4 N -0.348 5.348 5 C 0.383 3.617 6 O -0.373 6.373 7 C -0.024 4.024 8 C -0.264 4.264 9 C 0.278 3.722 10 O -0.404 6.404 11 N -0.216 5.216 12 C -0.028 4.028 13 O -0.014 6.014 14 C -0.104 4.104 15 C -0.175 4.175 16 C 0.046 3.954 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.019 3.981 27 C -0.165 4.165 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.243 0.757 32 H 0.210 0.790 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.611 -1.887 15.552 17.876 hybrid contribution 0.864 -0.119 -0.517 1.014 sum -7.747 -2.005 15.035 17.032 Atomic orbital electron populations 1.22231 0.94992 1.02294 1.02710 1.21373 0.93987 0.97797 0.82978 0.88940 1.46109 1.64969 1.14573 1.09182 1.16697 0.78592 0.85689 0.80757 1.90892 1.49651 1.13720 1.83068 1.23527 0.99326 0.81692 0.97829 1.23325 1.08189 1.02615 0.92313 1.18334 0.82694 0.83073 0.88064 1.90970 1.53861 1.82698 1.12884 1.46100 1.61311 1.13555 1.00622 1.22154 1.01529 0.76979 1.02167 1.84016 1.72130 1.27116 1.18099 1.21360 0.97373 0.99156 0.92509 1.22255 0.93445 1.01789 1.00012 1.20757 0.99516 0.92616 0.82544 1.44047 0.99525 1.72020 1.15903 1.19150 0.99208 1.12196 1.07690 0.91737 1.25021 1.00028 0.95301 0.99283 1.70021 1.22789 1.14036 1.47961 0.86381 0.81126 0.79003 0.80334 1.21025 1.21645 1.20883 1.20891 0.86099 0.96433 0.94664 1.22090 0.98796 1.00073 0.95569 0.90622 0.92366 0.92465 0.75714 0.78992 0.88113 0.89101 0.89188 0.91226 0.92508 0.93564 0.96572 0.89499 0.93623 0.96531 0.92725 0.92541 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.13 37.16 0.34 -1.35 16 2 C 0.14 1.68 2.16 -67.93 -0.15 1.54 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 4 N -0.70 -7.43 4.36 -54.64 -0.24 -7.66 16 5 C 0.60 7.09 7.81 -12.17 -0.09 6.99 16 6 O -0.50 -7.28 16.56 5.37 0.09 -7.19 16 7 C 0.03 0.37 7.25 -36.18 -0.26 0.11 16 8 C -0.24 -2.71 10.94 -38.70 -0.42 -3.13 16 9 C 0.48 6.00 8.02 -14.66 -0.12 5.88 16 10 O -0.52 -8.15 17.92 4.94 0.09 -8.06 16 11 N -0.45 -4.40 3.68 -69.77 -0.26 -4.65 16 12 C 0.11 0.61 11.18 59.85 0.67 1.28 16 13 O 0.00 -0.02 10.69 16.84 0.18 0.16 16 14 C -0.08 -1.18 1.79 -90.58 -0.16 -1.34 16 15 C -0.14 -2.30 5.22 -26.61 -0.14 -2.44 16 16 C 0.17 3.81 5.31 -3.72 -0.02 3.79 16 17 N -0.59 -14.06 2.99 -172.33 -0.52 -14.58 16 18 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 19 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 21 N -0.90 -25.48 11.19 55.49 0.62 -24.86 16 22 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.15 2.81 6.52 -3.71 -0.02 2.79 16 27 C -0.13 -1.90 5.04 -26.61 -0.13 -2.03 16 28 H 0.07 0.75 6.40 -51.93 -0.33 0.41 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.41 3.64 8.20 -40.82 -0.33 3.31 16 32 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.69 7.41 -51.93 -0.38 0.31 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 44 H 0.06 0.71 6.36 -51.93 -0.33 0.38 16 45 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -32.82 368.74 -6.95 -39.77 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.70 Total: 0.10 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.75 Total: 5.17 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.39 Total: -51.75 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.36 Total: -15.09 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.82 -6.95 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997051562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.551 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds