Wall clock time and date at job start Tue Mar 31 2020 14:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46697 * 2 1 4 4 N 1.46500 * 109.47386 * 120.00282 * 2 1 3 5 5 C 1.34780 * 119.99984 * 275.00203 * 4 2 1 6 6 O 1.21499 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.48201 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.36322 * 126.38340 * 179.71182 * 7 5 4 9 9 C 1.42335 * 104.00675 * 179.97438 * 8 7 5 10 10 O 1.21981 * 127.15008 * 180.08431 * 9 8 7 11 11 N 1.34826 * 105.70628 * 0.33138 * 9 8 7 12 12 C 1.46503 * 124.57109 * 179.81181 * 11 9 8 13 13 O 1.20924 * 110.86725 * 359.78788 * 11 9 8 14 14 C 1.52998 * 109.47241 * 240.00744 * 2 1 3 15 15 C 1.53041 * 109.46200 * 180.02562 * 14 2 1 16 16 C 1.53189 * 109.31425 * 178.61144 * 15 14 2 17 17 N 1.46920 * 108.77517 * 54.63211 * 16 15 14 18 18 C 1.36935 * 120.62752 * 126.41442 * 17 16 15 19 19 H 1.08004 * 119.99946 * 207.66610 * 18 17 16 20 20 C 1.38814 * 120.00466 * 27.66589 * 18 17 16 21 21 N 1.31620 * 119.99469 * 17.36277 * 20 18 17 22 22 Si 1.86796 * 120.00357 * 197.36767 * 20 18 17 23 23 H 1.48499 * 109.47342 * 59.99674 * 22 20 18 24 24 H 1.48508 * 109.47262 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46967 * 299.99724 * 22 20 18 26 26 C 1.46921 * 118.74386 * 306.39498 * 17 16 15 27 27 C 1.53037 * 109.46521 * 59.99395 * 14 2 1 28 28 H 1.09001 * 109.47380 * 59.99259 * 1 2 3 29 29 H 1.09004 * 109.47362 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47242 * 299.99461 * 1 2 3 31 31 H 0.96991 * 119.99949 * 94.99782 * 4 2 1 32 32 H 1.07996 * 127.99290 * 0.02562 * 8 7 5 33 33 H 1.09003 * 109.47465 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.46589 * 299.99689 * 12 11 9 35 35 H 1.08994 * 109.47146 * 59.99770 * 12 11 9 36 36 H 1.09004 * 109.45427 * 300.02348 * 14 2 1 37 37 H 1.08997 * 109.49693 * 298.56848 * 15 14 2 38 38 H 1.09005 * 109.49629 * 58.65780 * 15 14 2 39 39 H 1.09006 * 109.58739 * 294.84489 * 16 15 14 40 40 H 1.08997 * 109.58871 * 174.42624 * 16 15 14 41 41 H 0.97006 * 119.99970 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.58218 * 293.82018 * 26 17 16 43 43 H 1.08997 * 109.58845 * 173.39648 * 26 17 16 44 44 H 1.08999 * 109.49634 * 301.34500 * 27 14 2 45 45 H 1.09009 * 109.49498 * 61.43523 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1604 2.4119 7 6 2.6406 -0.7172 3.5673 8 6 2.8251 -0.1663 4.8005 9 6 3.3047 -1.2474 5.5925 10 8 3.6055 -1.2181 6.7743 11 7 3.3628 -2.3093 4.7637 12 6 3.8099 -3.6477 5.1576 13 8 2.9956 -2.0083 3.6516 14 6 2.0400 -0.7211 -1.2493 15 6 3.5704 -0.7215 -1.2487 16 6 4.0773 -1.4743 -2.4829 17 7 3.4745 -0.8766 -3.6820 18 6 4.2602 -0.4510 -4.7196 19 1 3.9212 0.3493 -5.3607 20 6 5.4924 -1.0481 -4.9475 21 7 5.7653 -2.2191 -4.4121 22 14 6.7634 -0.1897 -6.0140 23 1 7.1071 1.1244 -5.4138 24 1 7.9856 -1.0289 -6.1000 25 1 6.2081 0.0179 -7.3755 26 6 2.0127 -0.7446 -3.7470 27 6 1.5297 0.0005 -2.4987 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.2490 -1.6317 1.1525 32 1 2.6475 0.8542 5.1061 33 1 3.7589 -4.3156 4.2977 34 1 4.8378 -3.5962 5.5167 35 1 3.1663 -4.0268 5.9513 36 1 1.6762 -1.7486 -1.2494 37 1 3.9345 0.3056 -1.2740 38 1 3.9337 -1.2146 -0.3471 39 1 3.7907 -2.5237 -2.4141 40 1 5.1627 -1.3929 -2.5402 41 1 6.6265 -2.6362 -4.5710 42 1 1.5576 -1.7345 -3.7813 43 1 1.7358 -0.1818 -4.6384 44 1 0.4400 0.0216 -2.4870 45 1 1.9136 1.0207 -2.5119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997051562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:56 Heat of formation + Delta-G solvation = 5.216881 kcal Electronic energy + Delta-G solvation = -27835.419004 eV Core-core repulsion = 23857.417632 eV Total energy + Delta-G solvation = -3978.001373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.25030 -41.24440 -39.47048 -39.37637 -36.93763 -35.44104 -34.59521 -33.41718 -32.70603 -31.79918 -30.42714 -28.89810 -27.15337 -25.58672 -24.66153 -24.09653 -23.54534 -22.00361 -21.58655 -20.72448 -19.77690 -19.51797 -18.70986 -18.27098 -17.47114 -16.84657 -16.54298 -16.21729 -16.18284 -15.75418 -15.37777 -15.25054 -15.06197 -14.86356 -14.83113 -14.73493 -14.34587 -14.22162 -13.97773 -13.68526 -13.57745 -13.17357 -13.05667 -12.71625 -12.65212 -12.38393 -12.19394 -11.97099 -11.79585 -11.77237 -11.44757 -11.38006 -11.14882 -11.08772 -11.05201 -10.50381 -10.25699 -9.69963 -8.63841 -7.85707 -5.29119 -0.62798 0.50781 1.36387 1.46781 1.49261 1.55297 1.58424 1.82182 2.23806 2.52515 3.28361 3.37498 3.61959 3.71187 3.78520 3.85588 3.98385 4.07485 4.26586 4.31766 4.44362 4.49015 4.58456 4.62200 4.63342 4.67689 4.78106 4.79890 4.82107 4.94614 5.01379 5.08261 5.12977 5.20335 5.33280 5.39391 5.44083 5.48301 5.58760 5.69045 5.82821 6.13615 6.41962 6.43365 6.77962 6.81969 7.18546 7.91875 8.40938 9.19732 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.002916 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.250175 B = 9599.662446 C =10617.795872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.077 0.923 4 N -0.689 5.689 5 C 0.608 3.392 6 O -0.527 6.527 7 C 0.041 3.959 8 C -0.247 4.247 9 C 0.468 3.532 10 O -0.565 6.565 11 N -0.444 5.444 12 C 0.095 3.905 13 O 0.015 5.985 14 C -0.074 4.074 15 C -0.122 4.122 16 C 0.177 3.823 17 N -0.612 5.612 18 C -0.262 4.262 19 H 0.063 0.937 20 C -0.050 4.050 21 N -0.932 5.932 22 Si 0.961 3.039 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.276 1.276 26 C 0.139 3.861 27 C -0.115 4.115 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.418 0.582 32 H 0.198 0.802 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.001 0.999 40 H 0.047 0.953 41 H 0.249 0.751 42 H 0.019 0.981 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 -2.607 15.327 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.095 0.905 4 N -0.339 5.339 5 C 0.390 3.610 6 O -0.404 6.404 7 C -0.019 4.019 8 C -0.272 4.272 9 C 0.267 3.733 10 O -0.450 6.450 11 N -0.204 5.204 12 C -0.039 4.039 13 O 0.003 5.997 14 C -0.093 4.093 15 C -0.161 4.161 16 C 0.051 3.949 17 N -0.336 5.336 18 C -0.392 4.392 19 H 0.081 0.919 20 C -0.245 4.245 21 N -0.579 5.579 22 Si 0.789 3.211 23 H -0.208 1.208 24 H -0.221 1.221 25 H -0.202 1.202 26 C 0.014 3.986 27 C -0.154 4.154 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.256 0.744 32 H 0.215 0.785 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.019 0.981 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.048 -2.248 15.809 18.866 hybrid contribution 1.274 -0.093 -0.667 1.441 sum -8.774 -2.341 15.142 17.656 Atomic orbital electron populations 1.22190 0.93082 1.03407 1.03005 1.21150 0.95282 0.96584 0.82152 0.90477 1.46001 1.64424 1.15009 1.08510 1.16642 0.78110 0.85248 0.80989 1.90887 1.50966 1.15006 1.83545 1.23229 0.99438 0.82013 0.97187 1.23426 1.08384 1.02929 0.92470 1.18479 0.83006 0.83981 0.87861 1.90941 1.56100 1.83487 1.14424 1.46398 1.59638 1.14286 1.00078 1.22601 1.02097 0.75384 1.03857 1.84039 1.71294 1.26484 1.17907 1.21230 0.94793 1.00138 0.93178 1.22036 0.95886 1.00026 0.98156 1.20575 0.97334 0.92534 0.84429 1.44339 1.01388 1.72107 1.15796 1.19466 0.99858 1.11841 1.08039 0.91898 1.25703 1.01775 0.95978 1.01068 1.70161 1.22788 1.15301 1.49616 0.85441 0.78716 0.77819 0.79088 1.20779 1.22055 1.20188 1.21085 0.83611 0.97047 0.96852 1.21960 1.00929 0.98774 0.93761 0.89812 0.90822 0.92749 0.74427 0.78477 0.85303 0.88459 0.87972 0.89863 0.94091 0.91382 0.98077 0.93492 0.94226 0.96308 0.93131 0.88841 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.13 71.98 0.66 -2.02 16 2 C 0.15 3.16 2.16 44.99 0.10 3.26 16 3 H 0.08 1.93 7.58 -2.39 -0.02 1.91 16 4 N -0.69 -12.69 4.36 -445.08 -1.94 -14.63 16 5 C 0.61 13.09 7.81 86.89 0.68 13.77 16 6 O -0.53 -14.63 16.56 -3.71 -0.06 -14.69 16 7 C 0.04 0.80 7.25 24.47 0.18 0.97 16 8 C -0.25 -5.39 10.94 22.84 0.25 -5.14 16 9 C 0.47 11.36 8.02 85.25 0.68 12.04 16 10 O -0.56 -17.69 17.92 -5.25 -0.09 -17.79 16 11 N -0.44 -7.78 3.68 -492.74 -1.82 -9.60 16 12 C 0.10 0.85 11.18 127.77 1.43 2.27 16 13 O 0.02 0.25 10.69 70.42 0.75 1.00 16 14 C -0.07 -1.87 1.79 -10.77 -0.02 -1.89 16 15 C -0.12 -3.99 5.22 30.67 0.16 -3.83 16 16 C 0.18 7.92 5.31 86.36 0.46 8.38 16 17 N -0.61 -29.18 2.99 -699.13 -2.09 -31.27 16 18 C -0.26 -14.07 9.58 84.03 0.81 -13.27 16 19 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 20 C -0.05 -2.73 4.91 84.86 0.42 -2.32 16 21 N -0.93 -53.84 11.19 21.65 0.24 -53.59 16 22 Si 0.96 44.34 29.59 68.60 2.03 46.37 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 C 0.14 5.21 6.52 86.36 0.56 5.77 16 27 C -0.12 -3.18 5.04 30.67 0.15 -3.02 16 28 H 0.08 1.29 6.40 -2.39 -0.02 1.28 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.42 6.01 8.20 -92.71 -0.76 5.25 16 32 H 0.20 3.96 8.06 -2.91 -0.02 3.93 16 33 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.91 7.41 -2.38 -0.02 1.89 16 39 H 0.00 0.05 8.14 -2.38 -0.02 0.04 16 40 H 0.05 2.47 6.04 -2.39 -0.01 2.45 16 41 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 42 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 44 H 0.09 1.94 6.36 -2.39 -0.02 1.93 16 45 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -73.01 368.74 3.78 -69.22 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.25 Total: 9.99 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.51 Total: 14.99 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -5.61 Total: -109.09 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: 0.60 Total: -31.48 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -73.01 3.78 -69.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997051562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.442 kcal (2) G-P(sol) polarization free energy of solvation -73.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds