Wall clock time and date at job start Tue Mar 31 2020 14:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35356 * 117.00453 * 2 1 4 4 N 1.30547 * 125.44580 * 180.29745 * 3 2 1 5 5 C 1.36336 * 108.38150 * 180.16211 * 4 3 2 6 6 C 1.47359 * 126.41384 * 179.82559 * 5 4 3 7 7 O 1.21627 * 119.99990 * 179.68589 * 6 5 4 8 8 N 1.34778 * 120.00341 * 359.68765 * 6 5 4 9 9 C 1.46492 * 120.00179 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47316 * 34.72352 * 9 8 6 11 11 C 1.53001 * 109.47245 * 274.72241 * 9 8 6 12 12 C 1.53000 * 109.47051 * 154.72813 * 9 8 6 13 13 C 1.53044 * 109.45962 * 300.06404 * 12 9 8 14 14 C 1.53190 * 109.31415 * 178.61642 * 13 12 9 15 15 N 1.46923 * 108.77642 * 54.63508 * 14 13 12 16 16 C 1.36944 * 120.62697 * 126.41365 * 15 14 13 17 17 H 1.07997 * 119.99121 * 207.66670 * 16 15 14 18 18 C 1.38808 * 120.00108 * 27.66585 * 16 15 14 19 19 N 1.31618 * 120.00180 * 17.36317 * 18 16 15 20 20 Si 1.86799 * 119.99978 * 197.36836 * 18 16 15 21 21 H 1.48490 * 109.47299 * 59.99502 * 20 18 16 22 22 H 1.48504 * 109.47198 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.46911 * 299.99957 * 20 18 16 24 24 C 1.46924 * 118.73956 * 306.39199 * 15 14 13 25 25 C 1.53045 * 109.46058 * 180.02562 * 12 9 8 26 26 C 1.35919 * 107.17275 * 359.56192 * 5 4 3 27 27 O 1.34206 * 125.44303 * 359.97057 * 3 2 1 28 28 H 1.09001 * 109.46795 * 59.99837 * 1 2 3 29 29 H 1.08990 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47034 * 300.00866 * 1 2 3 31 31 H 0.97008 * 119.99478 * 359.72686 * 8 6 5 32 32 H 1.09007 * 109.47068 * 60.00603 * 11 9 8 33 33 H 1.09007 * 109.47590 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.47497 * 300.00345 * 11 9 8 35 35 H 1.09002 * 109.46239 * 60.02651 * 12 9 8 36 36 H 1.09003 * 109.49780 * 298.57216 * 13 12 9 37 37 H 1.09000 * 109.49278 * 58.66320 * 13 12 9 38 38 H 1.09005 * 109.58509 * 294.84867 * 14 13 12 39 39 H 1.09001 * 109.58597 * 174.42688 * 14 13 12 40 40 H 0.96997 * 119.99972 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.58690 * 293.81711 * 24 15 14 42 42 H 1.08999 * 109.58254 * 173.39418 * 24 15 14 43 43 H 1.08998 * 109.49379 * 301.33184 * 25 12 9 44 44 H 1.08997 * 109.49871 * 61.43087 * 25 12 9 45 45 H 1.07992 * 126.45874 * 180.30010 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 7 3.3349 1.3976 -0.0055 5 6 3.5703 2.7405 0.0002 6 6 4.8894 3.3974 0.0006 7 8 4.9642 4.6114 0.0003 8 7 6.0129 2.6530 0.0012 9 6 7.3242 3.3061 0.0021 10 1 7.2726 4.2241 0.5875 11 6 7.7288 3.6400 -1.4352 12 6 8.3619 2.3657 0.6185 13 6 7.9562 2.0306 2.0556 14 6 8.9787 1.0618 2.6578 15 7 10.3192 1.6498 2.5308 16 6 11.1291 1.7836 3.6269 17 1 11.8707 2.5681 3.6576 18 6 10.9968 0.9111 4.6983 19 7 10.3585 -0.2295 4.5433 20 14 11.7245 1.3558 6.3603 21 1 11.1117 2.6176 6.8474 22 1 11.4489 0.2647 7.3293 23 1 13.1921 1.5382 6.2252 24 6 10.7743 2.0909 1.2053 25 6 9.7316 3.0485 0.6199 26 6 2.3605 3.3600 -0.0004 27 8 1.4228 2.3958 -0.0006 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 5.9532 1.6848 0.0054 32 1 6.9896 4.3100 -1.8744 33 1 8.7047 4.1255 -1.4346 34 1 7.7804 2.7220 -2.0207 35 1 8.4138 1.4480 0.0326 36 1 7.9283 2.9449 2.6484 37 1 6.9703 1.5657 2.0563 38 1 8.9434 0.1134 2.1217 39 1 8.7501 0.8973 3.7109 40 1 10.2664 -0.8393 5.2919 41 1 10.8855 1.2265 0.5507 42 1 11.7305 2.6055 1.2999 43 1 10.0096 3.3082 -0.4015 44 1 9.6866 3.9529 1.2264 45 1 2.1851 4.4256 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997245384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:03 Heat of formation + Delta-G solvation = -27.230137 kcal Electronic energy + Delta-G solvation = -27587.988911 eV Core-core repulsion = 23608.580530 eV Total energy + Delta-G solvation = -3979.408381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.73306 -39.84947 -39.13612 -37.86931 -35.29945 -35.20846 -32.82538 -31.07348 -30.28091 -30.15322 -28.73802 -27.85028 -25.49078 -24.68128 -23.03128 -22.50058 -21.90791 -20.90382 -20.34149 -19.41930 -18.86078 -17.83119 -17.45441 -16.74708 -16.59229 -15.98018 -15.66466 -15.56372 -14.90829 -14.69134 -14.23886 -13.89967 -13.77110 -13.45052 -13.30283 -13.27630 -12.88706 -12.74019 -12.36968 -12.32574 -12.15913 -11.62549 -11.50234 -11.28219 -11.15501 -11.04333 -10.91403 -10.63628 -10.40804 -10.26564 -10.12616 -10.10266 -9.82985 -9.45686 -9.40525 -9.06045 -8.83902 -8.40315 -6.60570 -5.72908 -3.14553 0.85745 1.59146 1.80705 2.41914 3.12081 3.22631 3.42249 3.47832 3.49567 4.25758 4.42903 4.52880 4.54925 4.61112 4.80614 4.96649 5.02304 5.20846 5.27510 5.39629 5.44396 5.48988 5.56987 5.69287 5.79944 5.88128 6.03753 6.15363 6.17853 6.28201 6.33690 6.39244 6.51062 6.63845 6.69185 6.76880 6.85294 6.91322 7.05511 7.18709 7.45229 7.60878 7.73105 7.84966 8.17024 8.51413 9.27696 9.91738 10.48429 11.35426 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.002882 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.886174 B = 9712.369115 C =10902.894879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.243 6.243 3 C 0.380 3.620 4 N -0.452 5.452 5 C -0.043 4.043 6 C 0.602 3.398 7 O -0.539 6.539 8 N -0.697 5.697 9 C 0.143 3.857 10 H 0.088 0.912 11 C -0.162 4.162 12 C -0.084 4.084 13 C -0.135 4.135 14 C 0.172 3.828 15 N -0.593 5.593 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.146 3.854 25 C -0.125 4.125 26 C 0.000 4.000 27 O -0.226 6.226 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.410 0.590 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.016 0.984 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.101 3.865 -12.573 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.151 6.151 3 C 0.134 3.866 4 N -0.198 5.198 5 C -0.162 4.162 6 C 0.387 3.613 7 O -0.417 6.417 8 N -0.347 5.347 9 C 0.039 3.961 10 H 0.106 0.894 11 C -0.220 4.220 12 C -0.104 4.104 13 C -0.174 4.174 14 C 0.046 3.954 15 N -0.315 5.315 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.019 3.981 25 C -0.165 4.165 26 C -0.073 4.073 27 O -0.118 6.118 28 H 0.086 0.914 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.246 0.754 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -19.595 3.841 -12.446 23.530 hybrid contribution -0.581 0.136 0.914 1.092 sum -20.176 3.977 -11.532 23.577 Atomic orbital electron populations 1.23307 0.75110 1.05720 1.02962 1.86408 1.23645 1.15797 1.89227 1.23385 0.85633 0.79544 0.98024 1.71139 1.09716 1.15688 1.23268 1.21774 0.96027 0.88343 1.10091 1.16631 0.81975 0.85985 0.76715 1.90825 1.86719 1.12683 1.51481 1.45949 1.05293 1.10985 1.72424 1.21244 0.80956 0.97137 0.96730 0.89391 1.22215 1.01895 1.01659 0.96257 1.21338 0.94071 0.97567 0.97383 1.22230 0.99225 1.01363 0.94564 1.20759 0.82372 0.91259 1.00996 1.44059 1.12785 1.72166 1.02528 1.19147 1.15364 1.09261 0.94304 0.91801 1.25021 1.00345 0.94789 0.99580 1.70027 1.46264 1.08089 1.30378 0.86388 0.78922 0.77422 0.84149 1.21086 1.21688 1.20935 1.20889 0.94803 0.94616 0.87753 1.22082 0.94972 0.99707 0.99720 1.24956 0.84940 0.93766 1.03603 1.84385 1.39562 1.15889 1.71937 0.91446 0.86244 0.91365 0.75394 0.92675 0.90977 0.92543 0.91348 0.92730 0.93353 0.96544 0.89583 0.93662 0.96556 0.92837 0.92652 0.92146 0.74783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.73 101.05 1.08 1.19 16 2 O -0.24 -2.29 10.55 -40.99 -0.43 -2.72 16 3 C 0.38 4.27 8.98 52.22 0.47 4.74 16 4 N -0.45 -6.07 11.10 -11.71 -0.13 -6.20 16 5 C -0.04 -0.56 6.99 -82.99 -0.58 -1.14 16 6 C 0.60 8.80 7.78 -12.55 -0.10 8.70 16 7 O -0.54 -8.93 16.54 5.25 0.09 -8.84 16 8 N -0.70 -9.88 4.36 -54.90 -0.24 -10.12 16 9 C 0.14 2.09 2.16 -67.93 -0.15 1.94 16 10 H 0.09 1.43 7.57 -51.93 -0.39 1.03 16 11 C -0.16 -2.06 9.14 37.16 0.34 -1.72 16 12 C -0.08 -1.39 1.79 -90.57 -0.16 -1.55 16 13 C -0.13 -2.61 5.22 -26.61 -0.14 -2.75 16 14 C 0.17 4.15 5.31 -3.71 -0.02 4.13 16 15 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 16 C -0.25 -6.99 9.59 -15.06 -0.14 -7.13 16 17 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 18 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 19 N -0.90 -26.58 11.19 55.49 0.62 -25.96 16 20 Si 0.90 22.04 29.59 -169.99 -5.03 17.01 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 25 C -0.13 -2.13 5.04 -26.61 -0.13 -2.26 16 26 C 0.00 0.00 11.93 29.90 0.36 0.35 16 27 O -0.23 -2.17 10.20 -17.77 -0.18 -2.35 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.12 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.41 5.65 8.11 -40.82 -0.33 5.31 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.85 6.40 -51.93 -0.33 0.52 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.87 7.40 -51.93 -0.38 0.49 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 40 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.05 0.79 6.36 -51.93 -0.33 0.46 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.24 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -33.24 369.40 -6.23 -39.48 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.70 Total: 2.16 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 0.72 Total: 7.48 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.26 Total: -57.78 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.53 Total: -13.91 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.24 -6.23 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997245384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.245 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds