Wall clock time and date at job start Tue Mar 31 2020 14:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35728 * 117.00198 * 2 1 4 4 C 1.41853 * 126.78828 * 180.27735 * 3 2 1 5 5 C 1.36666 * 103.81123 * 180.14442 * 4 3 2 6 6 C 1.47540 * 126.87866 * 179.90980 * 5 4 3 7 7 O 1.21580 * 119.99972 * 359.71490 * 6 5 4 8 8 N 1.34778 * 119.99924 * 179.71295 * 6 5 4 9 9 C 1.46495 * 120.00006 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47295 * 324.99995 * 9 8 6 11 11 C 1.53004 * 109.47335 * 84.99532 * 9 8 6 12 12 C 1.53003 * 109.47087 * 204.99621 * 9 8 6 13 13 C 1.53029 * 109.45995 * 300.02706 * 12 9 8 14 14 C 1.53194 * 109.31182 * 178.59923 * 13 12 9 15 15 N 1.46927 * 108.76350 * 54.65711 * 14 13 12 16 16 C 1.36931 * 120.63161 * 126.40720 * 15 14 13 17 17 H 1.07999 * 120.00321 * 331.82531 * 16 15 14 18 18 C 1.38818 * 120.00160 * 151.82524 * 16 15 14 19 19 N 1.31617 * 120.00053 * 343.06918 * 18 16 15 20 20 Si 1.86802 * 120.00137 * 163.07522 * 18 16 15 21 21 H 1.48494 * 109.47474 * 89.99755 * 20 18 16 22 22 H 1.48500 * 109.46896 * 210.00057 * 20 18 16 23 23 H 1.48502 * 109.47000 * 329.99481 * 20 18 16 24 24 C 1.46927 * 118.73739 * 306.38076 * 15 14 13 25 25 C 1.53040 * 109.45775 * 179.97438 * 12 9 8 26 26 O 1.34666 * 106.24089 * 359.65008 * 5 4 3 27 27 N 1.20876 * 111.63097 * 0.23856 * 26 5 4 28 28 H 1.08994 * 109.47023 * 60.00258 * 1 2 3 29 29 H 1.09000 * 109.47199 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47136 * 299.99538 * 1 2 3 31 31 H 1.07999 * 128.09238 * 0.05265 * 4 3 2 32 32 H 0.97003 * 119.99826 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.47139 * 179.97438 * 11 9 8 34 34 H 1.09005 * 109.46795 * 60.00168 * 11 9 8 35 35 H 1.09000 * 109.47322 * 300.00277 * 11 9 8 36 36 H 1.09004 * 109.45612 * 60.00121 * 12 9 8 37 37 H 1.09001 * 109.50256 * 298.56067 * 13 12 9 38 38 H 1.09004 * 109.50059 * 58.66771 * 13 12 9 39 39 H 1.09002 * 109.59924 * 294.86983 * 14 13 12 40 40 H 1.08998 * 109.70401 * 174.50636 * 14 13 12 41 41 H 0.97000 * 120.00206 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.59107 * 293.82346 * 24 15 14 43 43 H 1.09003 * 109.70275 * 173.46648 * 24 15 14 44 44 H 1.08995 * 109.50156 * 301.33994 * 25 12 9 45 45 H 1.09005 * 109.49872 * 61.43909 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4431 1.4504 -0.0055 5 6 3.5391 2.8137 0.0004 6 6 4.7785 3.6141 0.0002 7 8 5.8604 3.0594 -0.0006 8 7 4.7114 4.9602 0.0007 9 6 5.9420 5.7550 -0.0002 10 1 6.7045 5.2447 0.5884 11 6 6.4375 5.9264 -1.4376 12 6 5.6617 7.1297 0.6101 13 6 4.5908 7.8455 -0.2161 14 6 4.2877 9.2068 0.4179 15 7 5.5447 9.9552 0.5541 16 6 5.6637 11.2187 0.0401 17 1 5.0753 11.5106 -0.8172 18 6 6.5406 12.1247 0.6209 19 7 7.0027 11.9079 1.8341 20 14 7.0645 13.6515 -0.3191 21 1 6.1196 14.7598 -0.0296 22 1 8.4334 14.0457 0.1005 23 1 7.0574 13.3627 -1.7758 24 6 6.6715 9.3221 1.2529 25 6 6.9477 7.9595 0.6097 26 8 2.2758 3.2802 0.0007 27 7 1.4686 2.3805 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 4.2442 0.7261 -0.0113 32 1 3.8482 5.4028 0.0009 33 1 7.3529 6.5182 -1.4382 34 1 5.6750 6.4367 -2.0262 35 1 6.6372 4.9471 -1.8724 36 1 5.3088 7.0073 1.6341 37 1 4.9531 7.9906 -1.2339 38 1 3.6827 7.2430 -0.2350 39 1 3.8409 9.0608 1.4013 40 1 3.5985 9.7628 -0.2176 41 1 7.6152 12.5412 2.2401 42 1 6.4192 9.1855 2.3045 43 1 7.5570 9.9522 1.1685 44 1 7.7174 7.4380 1.1786 45 1 7.2874 8.1034 -0.4160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997551661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:53 Heat of formation + Delta-G solvation = 13.418211 kcal Electronic energy + Delta-G solvation = -27479.279535 eV Core-core repulsion = 23501.633799 eV Total energy + Delta-G solvation = -3977.645736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.31989 -40.14196 -39.27216 -38.15171 -35.48097 -33.58277 -33.16077 -32.16408 -31.06403 -29.81321 -28.90564 -28.07199 -25.62267 -24.65775 -23.68738 -23.06296 -22.30259 -21.15587 -20.46945 -19.33543 -18.64816 -18.29658 -17.23159 -16.72587 -16.39998 -16.22564 -15.95908 -15.34613 -15.04371 -14.80428 -14.43295 -14.21185 -13.91070 -13.84642 -13.60030 -13.12362 -12.78745 -12.67404 -12.52098 -12.32390 -12.21173 -11.82525 -11.69761 -11.44327 -11.28291 -10.94235 -10.70678 -10.55489 -10.47841 -10.22133 -10.21181 -10.12278 -9.92126 -9.73245 -9.54836 -9.44905 -9.18816 -8.46986 -6.66698 -5.79240 -3.21418 0.43994 1.73252 2.24503 2.29768 2.74832 3.12961 3.36973 3.44368 3.46419 3.71940 4.38447 4.49315 4.58297 4.64005 4.70889 4.83121 4.96469 5.04144 5.08381 5.27297 5.31653 5.38146 5.49134 5.61150 5.66776 5.78231 5.94465 6.04854 6.11302 6.23922 6.30521 6.35519 6.45261 6.49139 6.61082 6.69953 6.74678 6.79657 6.97808 7.16771 7.37327 7.65826 7.67779 7.79359 7.82090 8.45166 9.21492 9.85077 10.41768 11.29279 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029702 B = 0.002339 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.465115 B =11970.302469 C =12473.537270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.203 3.797 4 C -0.156 4.156 5 C -0.054 4.054 6 C 0.603 3.397 7 O -0.511 6.511 8 N -0.701 5.701 9 C 0.144 3.856 10 H 0.090 0.910 11 C -0.164 4.164 12 C -0.086 4.086 13 C -0.131 4.131 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.171 3.829 25 C -0.134 4.134 26 O 0.119 5.881 27 N -0.389 5.389 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.190 0.810 32 H 0.408 0.592 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.016 0.984 40 H 0.053 0.947 41 H 0.253 0.747 42 H 0.017 0.983 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 -21.221 -3.884 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.006 3.994 4 C -0.179 4.179 5 C -0.121 4.121 6 C 0.385 3.615 7 O -0.387 6.387 8 N -0.353 5.353 9 C 0.041 3.959 10 H 0.108 0.892 11 C -0.222 4.222 12 C -0.105 4.105 13 C -0.170 4.170 14 C 0.019 3.981 15 N -0.314 5.314 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.045 3.955 25 C -0.173 4.173 26 O 0.052 5.948 27 N -0.112 5.112 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.208 0.792 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.107 -21.379 -3.787 23.544 hybrid contribution 0.155 0.530 -0.359 0.658 sum -8.953 -20.849 -4.146 23.066 Atomic orbital electron populations 1.23118 0.76457 1.04350 1.02561 1.86221 1.22852 1.20333 1.89337 1.21905 0.90652 0.85861 1.00959 1.22180 0.94421 0.94976 1.06294 1.24188 0.87127 0.93912 1.06824 1.16492 0.84950 0.82299 0.77757 1.90884 1.26367 1.71293 1.50174 1.46197 1.11718 1.04854 1.72505 1.21310 0.85129 0.91727 0.97753 0.89243 1.22251 1.02358 1.01796 0.95832 1.21347 0.98250 0.91662 0.99228 1.22141 0.96545 0.98177 1.00142 1.20879 0.89613 0.90689 0.96942 1.44039 1.07262 1.13817 1.66313 1.19157 1.23089 0.88066 1.07793 0.91790 1.25044 1.01887 0.97544 0.95222 1.70025 1.35190 1.37122 1.12395 0.86326 0.77869 0.83149 0.79596 1.21449 1.21586 1.20509 1.20764 0.92880 0.89294 0.92524 1.22267 0.94587 0.98668 1.01810 1.84968 1.11802 1.29638 1.68372 1.74012 1.15825 0.96692 1.24694 0.92054 0.87424 0.92037 0.79242 0.75558 0.90621 0.91834 0.92797 0.91150 0.91551 0.93622 0.96602 0.92849 0.93649 0.96507 0.89417 0.93065 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.73 101.05 1.08 1.27 16 2 O -0.28 -2.68 10.57 -18.89 -0.20 -2.88 16 3 C 0.20 2.18 8.00 -16.72 -0.13 2.04 16 4 C -0.16 -1.59 10.97 -38.77 -0.43 -2.02 16 5 C -0.05 -0.59 7.29 -36.36 -0.26 -0.85 16 6 C 0.60 7.31 7.78 -12.47 -0.10 7.22 16 7 O -0.51 -7.57 16.57 5.30 0.09 -7.48 16 8 N -0.70 -7.94 4.99 -54.85 -0.27 -8.21 16 9 C 0.14 1.83 2.40 -67.93 -0.16 1.67 16 10 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 11 C -0.16 -2.05 8.78 37.16 0.33 -1.72 16 12 C -0.09 -1.26 2.14 -90.58 -0.19 -1.46 16 13 C -0.13 -1.98 4.81 -26.62 -0.13 -2.11 16 14 C 0.15 2.85 6.52 -3.71 -0.02 2.82 16 15 N -0.59 -14.17 2.99 -172.31 -0.52 -14.68 16 16 C -0.25 -6.71 9.58 -15.06 -0.14 -6.86 16 17 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 19 N -0.90 -25.76 11.19 55.49 0.62 -25.14 16 20 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.17 3.88 5.30 -3.71 -0.02 3.86 16 25 C -0.13 -2.32 4.96 -26.61 -0.13 -2.45 16 26 O 0.12 1.30 11.03 15.49 0.17 1.47 16 27 N -0.39 -4.41 11.50 30.47 0.35 -4.06 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.41 4.03 6.67 -40.82 -0.27 3.76 16 33 H 0.07 0.96 6.46 -51.93 -0.34 0.63 16 34 H 0.06 0.78 6.46 -51.93 -0.34 0.44 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.05 6.51 -51.93 -0.34 0.71 16 38 H 0.05 0.56 6.46 -51.93 -0.34 0.23 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.26 6.07 -51.93 -0.31 1.94 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 1.10 6.51 -51.93 -0.34 0.76 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -30.67 363.98 -6.13 -36.80 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.43 Total: 1.01 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.40 Total: 1.38 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.18 Total: -52.10 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.06 Total: -8.89 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.67 -6.13 -36.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997551661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.218 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds