Wall clock time and date at job start Tue Mar 31 2020 14:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35352 * 117.00119 * 2 1 4 4 N 1.30555 * 125.45090 * 180.02562 * 3 2 1 5 5 C 1.36323 * 108.38419 * 180.02562 * 4 3 2 6 6 C 1.47371 * 126.41211 * 180.02562 * 5 4 3 7 7 O 1.21623 * 120.00287 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99763 * 0.02562 * 6 5 4 9 9 C 1.46502 * 120.00125 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47162 * 325.01006 * 9 8 6 11 11 C 1.53000 * 109.46817 * 85.00539 * 9 8 6 12 12 C 1.52993 * 109.47580 * 205.00487 * 9 8 6 13 13 C 1.53039 * 109.46021 * 300.02865 * 12 9 8 14 14 C 1.53197 * 109.31288 * 178.60186 * 13 12 9 15 15 N 1.46918 * 108.76550 * 54.65299 * 14 13 12 16 16 C 1.36945 * 120.62936 * 126.40778 * 15 14 13 17 17 H 1.08004 * 119.99612 * 331.82397 * 16 15 14 18 18 C 1.38813 * 120.00012 * 151.82195 * 16 15 14 19 19 N 1.31617 * 120.00214 * 343.08244 * 18 16 15 20 20 Si 1.86796 * 119.99574 * 163.07902 * 18 16 15 21 21 H 1.48503 * 109.47216 * 60.00455 * 20 18 16 22 22 H 1.48498 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47319 * 300.00153 * 20 18 16 24 24 C 1.46925 * 118.74185 * 306.38778 * 15 14 13 25 25 C 1.53039 * 109.46220 * 179.97438 * 12 9 8 26 26 C 1.35914 * 107.17866 * 0.26411 * 5 4 3 27 27 O 1.34204 * 125.44471 * 0.03235 * 3 2 1 28 28 H 1.08997 * 109.47393 * 59.99365 * 1 2 3 29 29 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46926 * 299.99681 * 1 2 3 31 31 H 0.97005 * 120.00482 * 0.02562 * 8 6 5 32 32 H 1.09004 * 109.47183 * 300.00093 * 11 9 8 33 33 H 1.08994 * 109.47553 * 180.02562 * 11 9 8 34 34 H 1.09002 * 109.47379 * 59.99730 * 11 9 8 35 35 H 1.09002 * 109.46004 * 60.00135 * 12 9 8 36 36 H 1.08995 * 109.49995 * 298.56553 * 13 12 9 37 37 H 1.09002 * 109.49923 * 58.66322 * 13 12 9 38 38 H 1.09003 * 109.59181 * 294.86466 * 14 13 12 39 39 H 1.09000 * 109.70183 * 174.51357 * 14 13 12 40 40 H 0.96993 * 120.00226 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.58672 * 293.81776 * 24 15 14 42 42 H 1.08999 * 109.70371 * 173.46449 * 24 15 14 43 43 H 1.09005 * 109.50111 * 301.33755 * 25 12 9 44 44 H 1.09001 * 109.49758 * 61.43188 * 25 12 9 45 45 H 1.08001 * 126.45811 * 179.73786 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 7 3.3348 1.3978 -0.0005 5 6 3.5700 2.7406 0.0003 6 6 4.8891 3.3977 -0.0004 7 8 4.9639 4.6116 0.0008 8 7 6.0127 2.6533 -0.0025 9 6 7.3241 3.3064 -0.0038 10 1 7.2732 4.2224 -0.5923 11 6 7.7265 3.6451 1.4330 12 6 8.3626 2.3641 -0.6156 13 6 8.4333 1.0779 0.2106 14 6 9.4487 0.1227 -0.4249 15 7 10.7332 0.8222 -0.5632 16 6 11.8816 0.2800 -0.0508 17 1 11.8338 -0.3749 0.8067 18 6 13.1072 0.5720 -0.6336 19 7 13.1546 1.0802 -1.8468 20 14 14.6891 0.2439 0.3041 21 1 14.7815 -1.2024 0.6281 22 1 15.8511 0.6384 -0.5321 23 1 14.6922 1.0340 1.5614 24 6 10.7625 2.1143 -1.2620 25 6 9.7322 3.0469 -0.6174 26 6 2.3602 3.3600 0.0072 27 8 1.4226 2.3958 0.0006 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 5.9531 1.6851 -0.0039 32 1 6.9866 4.3164 1.8689 33 1 8.7019 4.1314 1.4321 34 1 7.7773 2.7291 2.0216 35 1 8.0757 2.1230 -1.6392 36 1 8.7444 1.3155 1.2278 37 1 7.4519 0.6041 0.2310 38 1 9.0936 -0.1871 -1.4077 39 1 9.5762 -0.7537 0.2105 40 1 14.0109 1.2846 -2.2539 41 1 10.5146 1.9669 -2.3132 42 1 11.7562 2.5545 -1.1791 43 1 9.6754 3.9750 -1.1863 44 1 10.0309 3.2659 0.4078 45 1 2.1849 4.4257 0.0136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997690274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:06 Heat of formation + Delta-G solvation = -25.197195 kcal Electronic energy + Delta-G solvation = -27517.194698 eV Core-core repulsion = 23537.874472 eV Total energy + Delta-G solvation = -3979.320226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.78332 -39.91584 -39.19138 -37.98272 -35.28966 -35.25253 -32.79194 -31.20004 -30.40258 -29.71020 -28.79211 -27.89656 -25.54786 -24.71279 -23.18508 -22.67512 -22.20724 -20.95455 -20.25306 -19.29239 -18.55561 -17.88145 -17.53403 -16.77418 -16.57851 -15.90731 -15.72875 -15.60780 -14.89519 -14.73877 -14.34620 -14.08015 -13.78499 -13.71809 -13.51209 -13.02475 -12.78876 -12.68403 -12.43291 -12.40131 -12.09498 -11.61243 -11.40272 -11.32655 -11.18964 -11.09870 -10.86291 -10.66906 -10.40168 -10.29227 -10.13683 -10.05184 -9.84017 -9.45704 -9.36090 -9.11673 -8.88915 -8.41622 -6.60953 -5.74013 -3.16196 0.80948 1.54217 1.75615 2.37073 3.09433 3.17732 3.41514 3.47181 3.48562 4.21696 4.38395 4.48496 4.53859 4.56540 4.76416 4.93278 5.08372 5.16531 5.20714 5.39573 5.43861 5.46342 5.58598 5.72388 5.79292 5.90627 6.08730 6.17048 6.21419 6.23335 6.33318 6.43834 6.51174 6.58568 6.69810 6.78885 6.83913 6.88486 7.06300 7.14255 7.43401 7.57671 7.71765 7.83964 8.13418 8.50549 9.26800 9.90516 10.47667 11.34455 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.002489 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.166029 B =11246.763415 C =12015.196357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.243 6.243 3 C 0.380 3.620 4 N -0.453 5.453 5 C -0.044 4.044 6 C 0.601 3.399 7 O -0.539 6.539 8 N -0.699 5.699 9 C 0.144 3.856 10 H 0.086 0.914 11 C -0.163 4.163 12 C -0.085 4.085 13 C -0.130 4.130 14 C 0.146 3.854 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.172 3.828 25 C -0.133 4.133 26 C 0.000 4.000 27 O -0.226 6.226 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.410 0.590 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.052 0.948 40 H 0.254 0.746 41 H 0.016 0.984 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.143 2.816 3.893 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.151 6.151 3 C 0.134 3.866 4 N -0.199 5.199 5 C -0.163 4.163 6 C 0.385 3.615 7 O -0.417 6.417 8 N -0.350 5.350 9 C 0.040 3.960 10 H 0.104 0.896 11 C -0.221 4.221 12 C -0.104 4.104 13 C -0.169 4.169 14 C 0.020 3.980 15 N -0.314 5.314 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.046 3.954 25 C -0.173 4.173 26 C -0.072 4.072 27 O -0.118 6.118 28 H 0.086 0.914 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.247 0.753 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -25.464 2.957 3.786 25.913 hybrid contribution -0.068 -0.141 0.378 0.410 sum -25.532 2.816 4.164 26.022 Atomic orbital electron populations 1.23311 0.75080 1.05743 1.02982 1.86405 1.23670 1.15793 1.89222 1.23387 0.85629 0.79555 0.98017 1.71135 1.09727 1.15709 1.23325 1.21789 0.96057 0.88340 1.10118 1.16664 0.82008 0.86014 0.76786 1.90826 1.86727 1.12681 1.51467 1.46097 1.05348 1.11116 1.72453 1.21226 0.80676 0.96618 0.97441 0.89592 1.22231 1.01847 1.01872 0.96101 1.21324 0.94776 0.95150 0.99159 1.22126 0.98624 0.96182 1.00005 1.20876 0.86795 0.93454 0.96918 1.44034 1.02693 1.18368 1.66341 1.19143 0.84367 1.26797 1.07746 0.91829 1.25037 0.98157 1.01309 0.95203 1.70020 1.24432 1.48035 1.12325 0.86382 0.83130 0.78093 0.79236 1.20949 1.21694 1.21066 1.20758 0.97555 0.84604 0.92508 1.22261 0.94752 0.98575 1.01717 1.24967 0.84922 0.93776 1.03555 1.84387 1.39564 1.15887 1.71922 0.91384 0.86222 0.91399 0.75286 0.92945 0.90863 0.91992 0.91328 0.91687 0.93509 0.96626 0.92900 0.93634 0.96553 0.89466 0.93157 0.92023 0.74753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.73 101.05 1.08 1.17 16 2 O -0.24 -2.13 10.55 -40.98 -0.43 -2.57 16 3 C 0.38 4.03 8.98 52.22 0.47 4.50 16 4 N -0.45 -5.80 11.10 -11.71 -0.13 -5.93 16 5 C -0.04 -0.54 6.99 -82.99 -0.58 -1.12 16 6 C 0.60 8.50 7.78 -12.54 -0.10 8.40 16 7 O -0.54 -8.69 16.55 5.26 0.09 -8.60 16 8 N -0.70 -9.72 4.99 -54.90 -0.27 -10.00 16 9 C 0.14 2.11 2.40 -67.93 -0.16 1.95 16 10 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 11 C -0.16 -2.30 8.78 37.16 0.33 -1.97 16 12 C -0.08 -1.40 2.14 -90.58 -0.19 -1.59 16 13 C -0.13 -2.20 4.81 -26.61 -0.13 -2.33 16 14 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 15 N -0.59 -14.78 2.99 -172.32 -0.52 -15.30 16 16 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 17 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 19 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 20 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 25 C -0.13 -2.49 4.96 -26.61 -0.13 -2.62 16 26 C 0.00 0.00 11.93 29.90 0.36 0.36 16 27 O -0.23 -2.03 10.20 -17.78 -0.18 -2.22 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.41 5.52 6.57 -40.82 -0.27 5.25 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.03 6.46 -51.93 -0.34 0.70 16 34 H 0.06 0.87 6.46 -51.93 -0.34 0.54 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.13 6.51 -51.93 -0.34 0.79 16 37 H 0.05 0.69 6.46 -51.93 -0.34 0.35 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 2.32 6.07 -51.93 -0.31 2.01 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.16 6.51 -51.93 -0.34 0.82 16 45 H 0.24 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -32.77 364.25 -6.12 -38.89 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.43 Total: 2.44 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 0.67 Total: 6.74 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.30 Total: -56.97 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.53 Total: -13.38 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.77 -6.12 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997690274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.693 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds