Wall clock time and date at job start Tue Mar 31 2020 14:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35352 * 117.00119 * 2 1 4 4 N 1.30555 * 125.45090 * 180.02562 * 3 2 1 5 5 C 1.36323 * 108.38419 * 180.02562 * 4 3 2 6 6 C 1.47371 * 126.41211 * 180.02562 * 5 4 3 7 7 O 1.21623 * 120.00287 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99763 * 0.02562 * 6 5 4 9 9 C 1.46502 * 120.00125 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47162 * 325.01006 * 9 8 6 11 11 C 1.53000 * 109.46817 * 85.00539 * 9 8 6 12 12 C 1.52993 * 109.47580 * 205.00487 * 9 8 6 13 13 C 1.53039 * 109.46021 * 300.02865 * 12 9 8 14 14 C 1.53197 * 109.31288 * 178.60186 * 13 12 9 15 15 N 1.46918 * 108.76550 * 54.65299 * 14 13 12 16 16 C 1.36945 * 120.62936 * 126.40778 * 15 14 13 17 17 H 1.08004 * 119.99612 * 331.82397 * 16 15 14 18 18 C 1.38813 * 120.00012 * 151.82195 * 16 15 14 19 19 N 1.31617 * 120.00214 * 343.08244 * 18 16 15 20 20 Si 1.86796 * 119.99574 * 163.07902 * 18 16 15 21 21 H 1.48503 * 109.47216 * 60.00455 * 20 18 16 22 22 H 1.48498 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47319 * 300.00153 * 20 18 16 24 24 C 1.46925 * 118.74185 * 306.38778 * 15 14 13 25 25 C 1.53039 * 109.46220 * 179.97438 * 12 9 8 26 26 C 1.35914 * 107.17866 * 0.26411 * 5 4 3 27 27 O 1.34204 * 125.44471 * 0.03235 * 3 2 1 28 28 H 1.08997 * 109.47393 * 59.99365 * 1 2 3 29 29 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46926 * 299.99681 * 1 2 3 31 31 H 0.97005 * 120.00482 * 0.02562 * 8 6 5 32 32 H 1.09004 * 109.47183 * 300.00093 * 11 9 8 33 33 H 1.08994 * 109.47553 * 180.02562 * 11 9 8 34 34 H 1.09002 * 109.47379 * 59.99730 * 11 9 8 35 35 H 1.09002 * 109.46004 * 60.00135 * 12 9 8 36 36 H 1.08995 * 109.49995 * 298.56553 * 13 12 9 37 37 H 1.09002 * 109.49923 * 58.66322 * 13 12 9 38 38 H 1.09003 * 109.59181 * 294.86466 * 14 13 12 39 39 H 1.09000 * 109.70183 * 174.51357 * 14 13 12 40 40 H 0.96993 * 120.00226 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.58672 * 293.81776 * 24 15 14 42 42 H 1.08999 * 109.70371 * 173.46449 * 24 15 14 43 43 H 1.09005 * 109.50111 * 301.33755 * 25 12 9 44 44 H 1.09001 * 109.49758 * 61.43188 * 25 12 9 45 45 H 1.08001 * 126.45811 * 179.73786 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 7 3.3348 1.3978 -0.0005 5 6 3.5700 2.7406 0.0003 6 6 4.8891 3.3977 -0.0004 7 8 4.9639 4.6116 0.0008 8 7 6.0127 2.6533 -0.0025 9 6 7.3241 3.3064 -0.0038 10 1 7.2732 4.2224 -0.5923 11 6 7.7265 3.6451 1.4330 12 6 8.3626 2.3641 -0.6156 13 6 8.4333 1.0779 0.2106 14 6 9.4487 0.1227 -0.4249 15 7 10.7332 0.8222 -0.5632 16 6 11.8816 0.2800 -0.0508 17 1 11.8338 -0.3749 0.8067 18 6 13.1072 0.5720 -0.6336 19 7 13.1546 1.0802 -1.8468 20 14 14.6891 0.2439 0.3041 21 1 14.7815 -1.2024 0.6281 22 1 15.8511 0.6384 -0.5321 23 1 14.6922 1.0340 1.5614 24 6 10.7625 2.1143 -1.2620 25 6 9.7322 3.0469 -0.6174 26 6 2.3602 3.3600 0.0072 27 8 1.4226 2.3958 0.0006 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 5.9531 1.6851 -0.0039 32 1 6.9866 4.3164 1.8689 33 1 8.7019 4.1314 1.4321 34 1 7.7773 2.7291 2.0216 35 1 8.0757 2.1230 -1.6392 36 1 8.7444 1.3155 1.2278 37 1 7.4519 0.6041 0.2310 38 1 9.0936 -0.1871 -1.4077 39 1 9.5762 -0.7537 0.2105 40 1 14.0109 1.2846 -2.2539 41 1 10.5146 1.9669 -2.3132 42 1 11.7562 2.5545 -1.1791 43 1 9.6754 3.9750 -1.1863 44 1 10.0309 3.2659 0.4078 45 1 2.1849 4.4257 0.0136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997690274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:06 Heat of formation + Delta-G solvation = -50.589135 kcal Electronic energy + Delta-G solvation = -27518.295775 eV Core-core repulsion = 23537.874472 eV Total energy + Delta-G solvation = -3980.421303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.54396 -41.06083 -39.82920 -39.40518 -36.82367 -36.07833 -34.43522 -32.80736 -31.48112 -31.16441 -30.22225 -28.30025 -27.15939 -25.93142 -24.56284 -23.88010 -23.44286 -22.21763 -21.53434 -20.28730 -19.93786 -18.63101 -18.58357 -18.34427 -17.43158 -17.13806 -16.66134 -16.38145 -16.26397 -15.88165 -15.63012 -15.57032 -15.34472 -15.04796 -14.66252 -14.54100 -14.11585 -14.07721 -13.62892 -13.09385 -13.02712 -12.96269 -12.93662 -12.88032 -12.57356 -12.47374 -12.15463 -12.07925 -11.95143 -11.91676 -11.65276 -11.63318 -11.35875 -11.09595 -10.94804 -10.49908 -10.17813 -9.75009 -8.64228 -7.84462 -5.29710 0.02182 0.87575 0.90662 1.48136 1.50461 1.57233 1.71105 2.10234 2.18695 2.53568 3.29651 3.34968 3.71198 3.75146 3.82372 3.88726 4.07131 4.12538 4.22093 4.25897 4.38992 4.41386 4.44684 4.60841 4.61956 4.65965 4.69433 4.73850 4.82826 4.95000 4.97241 5.05811 5.17299 5.25309 5.29456 5.33797 5.44965 5.47380 5.59431 5.60335 5.69300 5.82763 6.30082 6.42380 6.57669 7.06639 7.18265 7.90261 8.42022 9.21654 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.002489 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.166029 B =11246.763415 C =12015.196357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.257 6.257 3 C 0.382 3.618 4 N -0.485 5.485 5 C -0.078 4.078 6 C 0.603 3.397 7 O -0.563 6.563 8 N -0.698 5.698 9 C 0.155 3.845 10 H 0.081 0.919 11 C -0.157 4.157 12 C -0.075 4.075 13 C -0.116 4.116 14 C 0.141 3.859 15 N -0.609 5.609 16 C -0.261 4.261 17 H 0.066 0.934 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.278 1.278 24 C 0.177 3.823 25 C -0.120 4.120 26 C 0.030 3.970 27 O -0.215 6.215 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.077 0.923 31 H 0.412 0.588 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.010 0.990 39 H 0.053 0.947 40 H 0.249 0.751 41 H -0.008 1.008 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.471 2.970 5.124 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.165 6.165 3 C 0.135 3.865 4 N -0.232 5.232 5 C -0.196 4.196 6 C 0.389 3.611 7 O -0.443 6.443 8 N -0.349 5.349 9 C 0.051 3.949 10 H 0.099 0.901 11 C -0.215 4.215 12 C -0.094 4.094 13 C -0.155 4.155 14 C 0.016 3.984 15 N -0.333 5.333 16 C -0.391 4.391 17 H 0.083 0.917 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.204 1.204 24 C 0.051 3.949 25 C -0.160 4.160 26 C -0.042 4.042 27 O -0.106 6.106 28 H 0.095 0.905 29 H 0.162 0.838 30 H 0.096 0.904 31 H 0.250 0.750 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -27.838 3.084 5.033 28.457 hybrid contribution 0.514 -0.259 -0.041 0.577 sum -27.323 2.825 4.993 27.919 Atomic orbital electron populations 1.23702 0.72590 1.07744 1.03939 1.86425 1.26178 1.14965 1.88944 1.23443 0.85473 0.80335 0.97225 1.71017 1.11200 1.16171 1.24785 1.21566 0.95983 0.88690 1.13347 1.16841 0.82583 0.85729 0.75905 1.90806 1.87202 1.13583 1.52686 1.46012 1.05082 1.11188 1.72612 1.20971 0.80592 0.95710 0.97585 0.90051 1.22176 1.01830 1.01967 0.95519 1.21166 0.94055 0.95147 0.99060 1.21961 0.98615 0.95484 0.99434 1.21037 0.86108 0.94328 0.96969 1.44305 1.03482 1.19189 1.66311 1.19483 0.85553 1.26423 1.07676 0.91662 1.25796 1.01146 1.01815 0.95977 1.70180 1.24677 1.49561 1.13806 0.85358 0.79131 0.78160 0.77905 1.20189 1.22138 1.20371 1.20573 0.97341 0.85229 0.91710 1.22051 0.94447 0.98103 1.01370 1.25589 0.83912 0.94790 0.99958 1.84432 1.39099 1.15514 1.71523 0.90471 0.83770 0.90379 0.75000 0.92757 0.90899 0.91811 0.91871 0.91613 0.90764 0.97226 0.92880 0.94172 0.98985 0.92827 0.91467 0.91847 0.71610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 10.73 113.37 1.22 1.29 16 2 O -0.26 -4.07 10.55 -64.20 -0.68 -4.75 16 3 C 0.38 7.45 8.98 130.43 1.17 8.62 16 4 N -0.49 -11.82 11.10 -419.39 -4.65 -16.47 16 5 C -0.08 -1.79 6.99 40.31 0.28 -1.51 16 6 C 0.60 16.25 7.78 86.65 0.67 16.92 16 7 O -0.56 -17.34 16.55 -4.10 -0.07 -17.41 16 8 N -0.70 -18.43 4.99 -445.85 -2.23 -20.66 16 9 C 0.16 4.33 2.40 44.99 0.11 4.44 16 10 H 0.08 2.40 7.58 -2.39 -0.02 2.39 16 11 C -0.16 -4.16 8.78 71.98 0.63 -3.53 16 12 C -0.08 -2.40 2.14 -10.77 -0.02 -2.42 16 13 C -0.12 -3.77 4.81 30.67 0.15 -3.63 16 14 C 0.14 5.87 6.52 86.37 0.56 6.44 16 15 N -0.61 -30.89 2.99 -699.10 -2.09 -32.98 16 16 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 17 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 18 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 19 N -0.94 -56.23 11.19 21.65 0.24 -55.99 16 20 Si 0.97 45.41 29.59 68.60 2.03 47.44 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C 0.18 8.63 5.30 86.36 0.46 9.09 16 25 C -0.12 -4.44 4.96 30.67 0.15 -4.29 16 26 C 0.03 0.48 11.93 67.28 0.80 1.28 16 27 O -0.22 -3.32 10.20 18.80 0.19 -3.13 16 28 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.41 10.48 6.57 -92.70 -0.61 9.87 16 32 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.07 1.93 6.46 -2.39 -0.02 1.92 16 34 H 0.06 1.66 6.46 -2.39 -0.02 1.65 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.17 6.51 -2.39 -0.02 2.15 16 37 H 0.07 2.03 6.46 -2.39 -0.02 2.02 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 40 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 41 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 42 H 0.05 2.96 6.07 -2.39 -0.01 2.95 16 43 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.06 2.34 6.51 -2.39 -0.02 2.32 16 45 H 0.27 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -71.96 364.25 0.56 -71.40 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.41 Total: 16.09 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 7.41 Total: 16.45 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -8.73 Total: -126.10 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.55 Total: -25.29 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -71.96 0.56 -71.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997690274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.812 kcal (2) G-P(sol) polarization free energy of solvation -71.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds