Wall clock time and date at job start Tue Mar 31 2020 14:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.47090 * 2 1 4 4 C 1.35354 * 116.99537 * 180.02562 * 3 2 1 5 5 N 1.30546 * 125.44323 * 179.97438 * 4 3 2 6 6 C 1.36331 * 108.38516 * 179.97438 * 5 4 3 7 7 C 1.47371 * 126.41684 * 179.97438 * 6 5 4 8 8 O 1.21619 * 119.99873 * 174.04239 * 7 6 5 9 9 N 1.34773 * 119.99654 * 354.04580 * 7 6 5 10 10 C 1.46498 * 120.00397 * 5.31196 * 9 7 6 11 11 C 1.46499 * 119.99863 * 185.31505 * 9 7 6 12 12 C 1.53045 * 109.46267 * 240.02611 * 11 9 7 13 13 C 1.53192 * 109.31180 * 178.59914 * 12 11 9 14 14 N 1.46924 * 108.76676 * 54.65837 * 13 12 11 15 15 C 1.36932 * 120.63231 * 126.40225 * 14 13 12 16 16 H 1.07996 * 120.00373 * 327.95991 * 15 14 13 17 17 C 1.38813 * 119.99976 * 147.96679 * 15 14 13 18 18 N 1.31622 * 120.00110 * 166.32734 * 17 15 14 19 19 Si 1.86803 * 119.99899 * 346.32044 * 17 15 14 20 20 H 1.48498 * 109.46876 * 87.12592 * 19 17 15 21 21 H 1.48498 * 109.47078 * 207.12091 * 19 17 15 22 22 H 1.48496 * 109.47447 * 327.12413 * 19 17 15 23 23 C 1.46930 * 118.73542 * 306.38190 * 14 13 12 24 24 C 1.53040 * 109.46228 * 119.96789 * 11 9 7 25 25 C 1.35920 * 107.17279 * 0.02562 * 6 5 4 26 26 O 1.34200 * 125.44773 * 359.69591 * 4 3 2 27 27 H 1.08998 * 109.46897 * 300.00278 * 1 2 3 28 28 H 1.09001 * 109.46781 * 59.99568 * 1 2 3 29 29 H 1.08991 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46966 * 239.99989 * 2 1 3 31 31 H 1.08994 * 109.47126 * 120.00672 * 2 1 3 32 32 H 1.08996 * 109.47029 * 84.67130 * 10 9 7 33 33 H 1.09004 * 109.47467 * 204.66901 * 10 9 7 34 34 H 1.09004 * 109.47018 * 324.67092 * 10 9 7 35 35 H 1.09009 * 109.46246 * 359.97438 * 11 9 7 36 36 H 1.09000 * 109.49072 * 298.56295 * 12 11 9 37 37 H 1.08997 * 109.49325 * 58.65983 * 12 11 9 38 38 H 1.08999 * 109.60010 * 294.86358 * 13 12 11 39 39 H 1.08999 * 109.69898 * 174.50436 * 13 12 11 40 40 H 0.97002 * 119.99804 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.58677 * 293.81876 * 23 14 13 42 42 H 1.09000 * 109.70243 * 173.47061 * 23 14 13 43 43 H 1.08995 * 109.50033 * 301.34186 * 24 11 9 44 44 H 1.08998 * 109.49553 * 61.43620 * 24 11 9 45 45 H 1.08002 * 126.45786 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3483 1.5245 -0.0005 5 7 3.9595 2.6780 -0.0011 6 6 5.3040 2.4523 -0.0009 7 6 6.3632 3.4769 -0.0020 8 8 7.5286 3.1468 0.1076 9 7 6.0403 4.7796 -0.1243 10 6 4.6333 5.1874 -0.1391 11 6 7.0964 5.7880 -0.2424 12 6 6.9870 6.7795 0.9183 13 6 8.1138 7.8117 0.8108 14 7 8.0609 8.4326 -0.5197 15 6 8.0060 9.7943 -0.6525 16 1 7.5031 10.3900 0.0948 17 6 8.5967 10.4092 -1.7480 18 7 8.3227 11.6666 -2.0239 19 14 9.7808 9.4520 -2.8303 20 1 9.0184 8.7323 -3.8819 21 1 10.7379 10.3913 -3.4681 22 1 10.5271 8.4717 -2.0014 23 6 8.0683 7.5645 -1.7051 24 6 6.9423 6.5348 -1.5694 25 6 5.4847 1.1051 -0.0008 26 8 4.2631 0.5426 0.0047 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.2761 5.2974 0.8848 33 1 4.5362 6.1389 -0.6620 34 1 4.0407 4.4292 -0.6512 35 1 8.0703 5.2994 -0.2114 36 1 6.0232 7.2867 0.8736 37 1 7.0734 6.2439 1.8636 38 1 9.0761 7.3179 0.9457 39 1 7.9854 8.5769 1.5764 40 1 8.7358 12.0964 -2.7892 41 1 9.0269 7.0504 -1.7755 42 1 7.9089 8.1645 -2.6010 43 1 6.9968 5.8250 -2.3947 44 1 5.9789 7.0443 -1.5902 45 1 6.4310 0.5845 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005667985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:55 Heat of formation + Delta-G solvation = -1.548103 kcal Electronic energy + Delta-G solvation = -27767.171014 eV Core-core repulsion = 23788.876289 eV Total energy + Delta-G solvation = -3978.294724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.76896 -39.96933 -39.32291 -37.65232 -35.53607 -34.95645 -32.55068 -32.27872 -30.47707 -30.34828 -29.71209 -26.78432 -25.64757 -24.35130 -23.71396 -22.86742 -22.67154 -21.62298 -20.31909 -19.18992 -18.54343 -17.94289 -17.30679 -16.83964 -16.66827 -16.08440 -16.05910 -15.31519 -15.22042 -14.94990 -14.14310 -13.93092 -13.72497 -13.63142 -13.46281 -13.31221 -13.09963 -13.01161 -12.77916 -12.39728 -12.33176 -12.28008 -11.91536 -11.84800 -11.74200 -11.23123 -10.88345 -10.82142 -10.57965 -10.46486 -10.15244 -10.08527 -9.98394 -9.63893 -9.46941 -9.03583 -8.61666 -8.35950 -6.89199 -5.90963 -3.33989 0.85021 1.53206 1.78350 2.35533 3.00297 3.20334 3.34011 3.50827 3.54199 4.11459 4.22018 4.23195 4.54553 4.55247 4.58479 4.71176 5.01037 5.08848 5.13563 5.14078 5.22909 5.32986 5.40173 5.43434 5.44706 5.51768 5.72652 5.83396 5.87954 6.07598 6.10515 6.14430 6.24655 6.35426 6.44023 6.46025 6.63699 6.67027 6.71677 6.78003 6.94374 7.19649 7.50103 8.03853 8.13349 8.37770 8.97093 9.74340 10.13762 11.25110 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026225 B = 0.002614 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.422724 B =10709.728348 C =11033.923892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.379 3.621 5 N -0.449 5.449 6 C -0.039 4.039 7 C 0.596 3.404 8 O -0.540 6.540 9 N -0.587 5.587 10 C 0.067 3.933 11 C 0.144 3.856 12 C -0.139 4.139 13 C 0.151 3.849 14 N -0.607 5.607 15 C -0.259 4.259 16 H 0.085 0.915 17 C 0.023 3.977 18 N -0.914 5.914 19 Si 0.891 3.109 20 H -0.287 1.287 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.125 3.875 24 C -0.140 4.140 25 C -0.001 4.001 26 O -0.227 6.227 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.263 0.737 41 H 0.028 0.972 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -26.502 4.200 30.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.153 6.153 4 C 0.134 3.866 5 N -0.195 5.195 6 C -0.157 4.157 7 C 0.382 3.618 8 O -0.418 6.418 9 N -0.317 5.317 10 C -0.075 4.075 11 C 0.042 3.958 12 C -0.179 4.179 13 C 0.025 3.975 14 N -0.331 5.331 15 C -0.387 4.387 16 H 0.102 0.898 17 C -0.176 4.176 18 N -0.557 5.557 19 Si 0.722 3.278 20 H -0.215 1.215 21 H -0.233 1.233 22 H -0.195 1.195 23 C -0.001 4.001 24 C -0.180 4.180 25 C -0.073 4.073 26 O -0.118 6.118 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -13.984 -25.833 4.169 29.670 hybrid contribution 0.767 -1.295 -0.708 1.663 sum -13.217 -27.128 3.461 30.375 Atomic orbital electron populations 1.21814 0.91172 1.03666 1.04300 1.23061 0.96910 0.79376 1.03030 1.86394 1.09020 1.30802 1.89133 1.23648 0.83448 0.81825 0.97706 1.71450 1.03973 1.20187 1.23939 1.21776 0.90181 0.94013 1.09750 1.16764 0.86003 0.81723 0.77292 1.90819 1.18349 1.81089 1.51570 1.47930 1.08678 1.05394 1.69665 1.22259 0.80448 1.02337 1.02473 1.21227 0.90826 0.87593 0.96129 1.22361 1.01757 0.97224 0.96546 1.20905 0.94305 0.93969 0.88328 1.44369 1.86338 1.02898 0.99524 1.18912 1.29825 0.80227 1.09750 0.89758 1.25399 0.98272 0.95222 0.98686 1.69775 1.45129 1.11736 1.29054 0.86879 0.81815 0.78756 0.80303 1.21473 1.23271 1.19509 1.21409 0.94810 0.91926 0.91990 1.22394 1.01823 0.98248 0.95496 1.24937 0.85767 0.92838 1.03791 1.84380 1.16277 1.39275 1.71909 0.90904 0.90899 0.89446 0.90808 0.90806 0.92781 0.91038 0.87873 0.88494 0.91496 0.92420 0.95678 0.91418 0.92759 0.95433 0.90499 0.92559 0.91192 0.74812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 10.28 37.16 0.38 -0.11 16 2 C 0.05 0.25 6.38 37.16 0.24 0.49 16 3 O -0.25 -2.20 10.19 -40.98 -0.42 -2.62 16 4 C 0.38 4.05 8.98 52.22 0.47 4.52 16 5 N -0.45 -5.72 7.84 -11.71 -0.09 -5.81 16 6 C -0.04 -0.50 6.68 -82.98 -0.55 -1.05 16 7 C 0.60 9.33 7.66 -12.55 -0.10 9.23 16 8 O -0.54 -9.65 16.23 5.26 0.09 -9.56 16 9 N -0.59 -9.17 2.76 -175.17 -0.48 -9.65 16 10 C 0.07 0.92 8.77 59.85 0.53 1.45 16 11 C 0.14 2.51 2.47 -67.89 -0.17 2.34 16 12 C -0.14 -2.41 5.34 -26.61 -0.14 -2.55 16 13 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 14 N -0.61 -14.59 2.73 -172.32 -0.47 -15.06 16 15 C -0.26 -7.27 10.05 -15.06 -0.15 -7.42 16 16 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 17 C 0.02 0.67 5.33 -17.43 -0.09 0.58 16 18 N -0.91 -28.24 13.97 55.49 0.78 -27.47 16 19 Si 0.89 22.86 24.26 -169.99 -4.12 18.73 16 20 H -0.29 -7.06 6.46 56.52 0.37 -6.69 16 21 H -0.30 -7.93 7.11 56.52 0.40 -7.52 16 22 H -0.27 -6.84 6.61 56.52 0.37 -6.47 16 23 C 0.12 2.77 4.16 -3.71 -0.02 2.76 16 24 C -0.14 -2.58 5.32 -26.61 -0.14 -2.72 16 25 C 0.00 -0.01 11.94 29.90 0.36 0.34 16 26 O -0.23 -2.13 10.20 -17.76 -0.18 -2.32 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.98 6.47 -51.93 -0.34 0.65 16 34 H 0.10 1.39 5.11 -51.93 -0.27 1.12 16 35 H 0.10 1.83 6.91 -51.92 -0.36 1.47 16 36 H 0.07 1.17 7.72 -51.93 -0.40 0.77 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.03 0.62 6.94 -51.93 -0.36 0.26 16 42 H 0.08 1.85 4.50 -51.93 -0.23 1.62 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 1.29 6.72 -51.93 -0.35 0.95 16 45 H 0.24 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -33.70 358.24 -5.49 -39.19 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.57 Total: -1.74 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 0.58 Total: 10.90 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.27 Total: -57.99 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.51 Total: -14.49 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.12 Total: 18.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.70 -5.49 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005667985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.644 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds