Wall clock time and date at job start Tue Mar 31 2020 14:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.47090 * 2 1 4 4 C 1.35354 * 116.99537 * 180.02562 * 3 2 1 5 5 N 1.30546 * 125.44323 * 179.97438 * 4 3 2 6 6 C 1.36331 * 108.38516 * 179.97438 * 5 4 3 7 7 C 1.47371 * 126.41684 * 179.97438 * 6 5 4 8 8 O 1.21619 * 119.99873 * 174.04239 * 7 6 5 9 9 N 1.34773 * 119.99654 * 354.04580 * 7 6 5 10 10 C 1.46498 * 120.00397 * 5.31196 * 9 7 6 11 11 C 1.46499 * 119.99863 * 185.31505 * 9 7 6 12 12 C 1.53045 * 109.46267 * 240.02611 * 11 9 7 13 13 C 1.53192 * 109.31180 * 178.59914 * 12 11 9 14 14 N 1.46924 * 108.76676 * 54.65837 * 13 12 11 15 15 C 1.36932 * 120.63231 * 126.40225 * 14 13 12 16 16 H 1.07996 * 120.00373 * 327.95991 * 15 14 13 17 17 C 1.38813 * 119.99976 * 147.96679 * 15 14 13 18 18 N 1.31622 * 120.00110 * 166.32734 * 17 15 14 19 19 Si 1.86803 * 119.99899 * 346.32044 * 17 15 14 20 20 H 1.48498 * 109.46876 * 87.12592 * 19 17 15 21 21 H 1.48498 * 109.47078 * 207.12091 * 19 17 15 22 22 H 1.48496 * 109.47447 * 327.12413 * 19 17 15 23 23 C 1.46930 * 118.73542 * 306.38190 * 14 13 12 24 24 C 1.53040 * 109.46228 * 119.96789 * 11 9 7 25 25 C 1.35920 * 107.17279 * 0.02562 * 6 5 4 26 26 O 1.34200 * 125.44773 * 359.69591 * 4 3 2 27 27 H 1.08998 * 109.46897 * 300.00278 * 1 2 3 28 28 H 1.09001 * 109.46781 * 59.99568 * 1 2 3 29 29 H 1.08991 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46966 * 239.99989 * 2 1 3 31 31 H 1.08994 * 109.47126 * 120.00672 * 2 1 3 32 32 H 1.08996 * 109.47029 * 84.67130 * 10 9 7 33 33 H 1.09004 * 109.47467 * 204.66901 * 10 9 7 34 34 H 1.09004 * 109.47018 * 324.67092 * 10 9 7 35 35 H 1.09009 * 109.46246 * 359.97438 * 11 9 7 36 36 H 1.09000 * 109.49072 * 298.56295 * 12 11 9 37 37 H 1.08997 * 109.49325 * 58.65983 * 12 11 9 38 38 H 1.08999 * 109.60010 * 294.86358 * 13 12 11 39 39 H 1.08999 * 109.69898 * 174.50436 * 13 12 11 40 40 H 0.97002 * 119.99804 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.58677 * 293.81876 * 23 14 13 42 42 H 1.09000 * 109.70243 * 173.47061 * 23 14 13 43 43 H 1.08995 * 109.50033 * 301.34186 * 24 11 9 44 44 H 1.08998 * 109.49553 * 61.43620 * 24 11 9 45 45 H 1.08002 * 126.45786 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3483 1.5245 -0.0005 5 7 3.9595 2.6780 -0.0011 6 6 5.3040 2.4523 -0.0009 7 6 6.3632 3.4769 -0.0020 8 8 7.5286 3.1468 0.1076 9 7 6.0403 4.7796 -0.1243 10 6 4.6333 5.1874 -0.1391 11 6 7.0964 5.7880 -0.2424 12 6 6.9870 6.7795 0.9183 13 6 8.1138 7.8117 0.8108 14 7 8.0609 8.4326 -0.5197 15 6 8.0060 9.7943 -0.6525 16 1 7.5031 10.3900 0.0948 17 6 8.5967 10.4092 -1.7480 18 7 8.3227 11.6666 -2.0239 19 14 9.7808 9.4520 -2.8303 20 1 9.0184 8.7323 -3.8819 21 1 10.7379 10.3913 -3.4681 22 1 10.5271 8.4717 -2.0014 23 6 8.0683 7.5645 -1.7051 24 6 6.9423 6.5348 -1.5694 25 6 5.4847 1.1051 -0.0008 26 8 4.2631 0.5426 0.0047 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.2761 5.2974 0.8848 33 1 4.5362 6.1389 -0.6620 34 1 4.0407 4.4292 -0.6512 35 1 8.0703 5.2994 -0.2114 36 1 6.0232 7.2867 0.8736 37 1 7.0734 6.2439 1.8636 38 1 9.0761 7.3179 0.9457 39 1 7.9854 8.5769 1.5764 40 1 8.7358 12.0964 -2.7892 41 1 9.0269 7.0504 -1.7755 42 1 7.9089 8.1645 -2.6010 43 1 6.9968 5.8250 -2.3947 44 1 5.9789 7.0443 -1.5902 45 1 6.4310 0.5845 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005667985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:54 Heat of formation + Delta-G solvation = -26.170408 kcal Electronic energy + Delta-G solvation = -27768.238717 eV Core-core repulsion = 23788.876289 eV Total energy + Delta-G solvation = -3979.362428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.57512 -41.19932 -39.97455 -39.18786 -36.78032 -36.07082 -34.28661 -32.89925 -32.13651 -32.00093 -30.57092 -27.99237 -27.19116 -25.39378 -24.55922 -24.38040 -23.70632 -22.96051 -21.38087 -20.63533 -19.49151 -18.82714 -18.66590 -18.33217 -17.57654 -17.41223 -16.87303 -16.68083 -16.22238 -16.01335 -15.92328 -15.39464 -15.18058 -14.64970 -14.63079 -14.56934 -14.23978 -13.97196 -13.90029 -13.72379 -13.57153 -13.45774 -13.42048 -12.66290 -12.64803 -12.53776 -12.51122 -12.18203 -12.00699 -11.81910 -11.76960 -11.56569 -11.47490 -11.41700 -11.09313 -10.71661 -9.91528 -9.55748 -8.89959 -8.15460 -5.55170 0.00293 0.83552 0.89119 1.29845 1.41605 1.50589 1.61571 1.90288 2.12339 2.41395 3.09673 3.16564 3.30100 3.71252 3.74060 3.93427 3.93820 3.96094 4.01890 4.18778 4.26680 4.28192 4.31005 4.36492 4.47643 4.55606 4.62871 4.68745 4.75901 4.82831 4.85249 4.87596 4.91174 5.02823 5.05569 5.09955 5.16726 5.22845 5.39729 5.51881 5.68866 5.90282 6.14471 6.23969 6.45481 6.91336 6.95919 7.60058 8.02858 9.04263 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026225 B = 0.002614 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.422724 B =10709.728348 C =11033.923892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.256 6.256 4 C 0.384 3.616 5 N -0.474 5.474 6 C -0.072 4.072 7 C 0.596 3.404 8 O -0.567 6.567 9 N -0.590 5.590 10 C 0.074 3.926 11 C 0.152 3.848 12 C -0.125 4.125 13 C 0.147 3.853 14 N -0.620 5.620 15 C -0.246 4.246 16 H 0.053 0.947 17 C -0.034 4.034 18 N -0.960 5.960 19 Si 0.951 3.049 20 H -0.270 1.270 21 H -0.311 1.311 22 H -0.264 1.264 23 C 0.121 3.879 24 C -0.128 4.128 25 C 0.031 3.969 26 O -0.216 6.216 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.064 0.936 40 H 0.262 0.738 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.752 -30.046 4.225 33.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.165 6.165 4 C 0.138 3.862 5 N -0.221 5.221 6 C -0.190 4.190 7 C 0.385 3.615 8 O -0.448 6.448 9 N -0.319 5.319 10 C -0.068 4.068 11 C 0.049 3.951 12 C -0.165 4.165 13 C 0.022 3.978 14 N -0.345 5.345 15 C -0.376 4.376 16 H 0.071 0.929 17 C -0.229 4.229 18 N -0.606 5.606 19 Si 0.780 3.220 20 H -0.197 1.197 21 H -0.240 1.240 22 H -0.188 1.188 23 C -0.005 4.005 24 C -0.168 4.168 25 C -0.042 4.042 26 O -0.106 6.106 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -14.711 -29.433 4.211 33.174 hybrid contribution 0.859 -0.299 -0.622 1.101 sum -13.853 -29.732 3.590 32.997 Atomic orbital electron populations 1.21862 0.89915 1.05029 1.03845 1.23429 0.97864 0.77799 1.04133 1.86428 1.07970 1.33240 1.88839 1.23632 0.84133 0.81609 0.96858 1.71286 1.04076 1.21497 1.25217 1.21433 0.89894 0.94432 1.13238 1.17030 0.86282 0.81898 0.76300 1.90795 1.19597 1.81504 1.52855 1.47872 1.08795 1.05306 1.69915 1.22274 0.79479 1.02265 1.02783 1.20952 0.91107 0.87762 0.95273 1.22182 1.00259 0.96469 0.97586 1.21048 0.95877 0.94496 0.86363 1.44478 1.86685 1.01735 1.01580 1.18834 1.28181 0.82115 1.08443 0.92907 1.26026 1.00113 0.96097 1.00617 1.69908 1.46834 1.13616 1.30241 0.85900 0.79555 0.77442 0.79088 1.19667 1.23987 1.18829 1.21415 0.96424 0.92158 0.90477 1.22219 1.00055 0.97595 0.96933 1.25515 0.86632 0.91944 1.00067 1.84429 1.16000 1.38696 1.71505 0.91334 0.91371 0.87120 0.89710 0.89681 0.92366 0.91323 0.87357 0.89542 0.91700 0.90587 0.94801 0.91758 0.92917 0.94972 0.92414 0.90959 0.91334 0.71826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 10.28 71.98 0.74 0.10 16 2 C 0.04 0.31 6.38 71.98 0.46 0.77 16 3 O -0.26 -4.12 10.19 -64.23 -0.65 -4.77 16 4 C 0.38 7.39 8.98 130.43 1.17 8.56 16 5 N -0.47 -11.25 7.84 -419.39 -3.29 -14.53 16 6 C -0.07 -1.73 6.68 40.31 0.27 -1.46 16 7 C 0.60 17.66 7.66 86.65 0.66 18.32 16 8 O -0.57 -19.32 16.23 -4.09 -0.07 -19.38 16 9 N -0.59 -17.46 2.76 -826.36 -2.28 -19.75 16 10 C 0.07 1.92 8.77 127.77 1.12 3.04 16 11 C 0.15 5.04 2.47 45.02 0.11 5.15 16 12 C -0.13 -4.15 5.34 30.67 0.16 -3.99 16 13 C 0.15 5.84 6.52 86.36 0.56 6.40 16 14 N -0.62 -29.60 2.73 -699.11 -1.91 -31.51 16 15 C -0.25 -14.09 10.05 84.03 0.84 -13.24 16 16 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 17 C -0.03 -2.00 5.33 84.86 0.45 -1.55 16 18 N -0.96 -60.92 13.97 21.65 0.30 -60.62 16 19 Si 0.95 47.53 24.26 68.60 1.66 49.19 16 20 H -0.27 -12.65 6.46 99.48 0.64 -12.00 16 21 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 22 H -0.26 -12.75 6.61 99.48 0.66 -12.10 16 23 C 0.12 5.23 4.16 86.36 0.36 5.59 16 24 C -0.13 -4.54 5.32 30.67 0.16 -4.38 16 25 C 0.03 0.52 11.94 67.28 0.80 1.32 16 26 O -0.22 -3.41 10.20 18.86 0.19 -3.22 16 27 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.80 6.47 -2.39 -0.02 1.79 16 34 H 0.11 2.77 5.11 -2.38 -0.01 2.76 16 35 H 0.09 3.11 6.91 -2.38 -0.02 3.10 16 36 H 0.06 2.19 7.72 -2.39 -0.02 2.17 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 2.55 7.93 -2.39 -0.02 2.53 16 40 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 41 H 0.03 1.38 6.94 -2.39 -0.02 1.36 16 42 H 0.06 2.72 4.50 -2.39 -0.01 2.71 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.07 2.45 6.72 -2.39 -0.02 2.44 16 45 H 0.27 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -73.30 358.24 2.73 -70.57 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.89 Total: 9.38 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 7.88 Total: 24.64 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -7.18 Total: -126.41 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.53 Total: -27.37 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.66 Total: 49.19 kcal Total: -73.30 2.73 -70.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005667985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.399 kcal (2) G-P(sol) polarization free energy of solvation -73.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds