Wall clock time and date at job start Tue Mar 31 2020 14:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.46792 * 2 1 4 4 C 1.35733 * 116.99895 * 180.02562 * 3 2 1 5 5 C 1.41850 * 126.78584 * 180.02562 * 4 3 2 6 6 C 1.36668 * 103.81110 * 179.97438 * 5 4 3 7 7 C 1.47540 * 126.88034 * 179.97438 * 6 5 4 8 8 O 1.21580 * 119.99834 * 355.43588 * 7 6 5 9 9 N 1.34775 * 119.99816 * 175.71156 * 7 6 5 10 10 C 1.46496 * 120.00528 * 355.29704 * 9 7 6 11 11 C 1.46504 * 119.99683 * 175.30723 * 9 7 6 12 12 C 1.53046 * 109.45684 * 240.02582 * 11 9 7 13 13 C 1.53190 * 109.31232 * 178.60026 * 12 11 9 14 14 N 1.46923 * 108.76574 * 54.65502 * 13 12 11 15 15 C 1.36939 * 120.63254 * 126.40350 * 14 13 12 16 16 H 1.07993 * 120.00075 * 332.44305 * 15 14 13 17 17 C 1.38815 * 119.99921 * 152.43998 * 15 14 13 18 18 N 1.31623 * 119.99868 * 162.80116 * 17 15 14 19 19 Si 1.86804 * 120.00134 * 342.80654 * 17 15 14 20 20 H 1.48499 * 109.47278 * 95.31616 * 19 17 15 21 21 H 1.48506 * 109.46978 * 215.31570 * 19 17 15 22 22 H 1.48499 * 109.47005 * 335.31408 * 19 17 15 23 23 C 1.46929 * 118.74086 * 306.38062 * 14 13 12 24 24 C 1.53034 * 109.46294 * 119.97046 * 11 9 7 25 25 O 1.34666 * 106.24125 * 0.22351 * 6 5 4 26 26 N 1.20877 * 111.62682 * 359.59579 * 25 6 5 27 27 H 1.08999 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47159 * 299.99489 * 1 2 3 29 29 H 1.09000 * 109.47569 * 60.00065 * 1 2 3 30 30 H 1.09003 * 109.47159 * 240.00511 * 2 1 3 31 31 H 1.09000 * 109.47569 * 119.99935 * 2 1 3 32 32 H 1.07994 * 128.09503 * 359.94098 * 5 4 3 33 33 H 1.09008 * 109.46628 * 58.31661 * 10 9 7 34 34 H 1.08999 * 109.47465 * 178.31858 * 10 9 7 35 35 H 1.08997 * 109.47398 * 298.32496 * 10 9 7 36 36 H 1.08998 * 109.46360 * 359.97438 * 11 9 7 37 37 H 1.09001 * 109.49532 * 298.56488 * 12 11 9 38 38 H 1.08996 * 109.49817 * 58.65421 * 12 11 9 39 39 H 1.08995 * 109.60149 * 294.86480 * 13 12 11 40 40 H 1.08996 * 109.70011 * 174.50101 * 13 12 11 41 41 H 0.96995 * 119.99925 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58467 * 293.82934 * 23 14 13 43 43 H 1.08993 * 109.70594 * 173.46726 * 23 14 13 44 44 H 1.08998 * 109.50031 * 301.33090 * 24 11 9 45 45 H 1.09003 * 109.49897 * 61.39943 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3519 1.5253 -0.0005 5 6 4.0451 2.7628 -0.0001 6 6 5.3624 2.3989 -0.0004 7 6 6.5302 3.3007 -0.0007 8 8 6.3698 4.5029 -0.0845 9 7 7.7749 2.7913 0.0864 10 6 7.9654 1.3524 0.2848 11 6 8.9375 3.6766 -0.0173 12 6 9.7984 3.2503 -1.2087 13 6 10.9942 4.1993 -1.3351 14 7 11.7112 4.2296 -0.0530 15 6 13.0555 3.9740 0.0009 16 1 13.5150 3.3407 -0.7434 17 6 13.8275 4.5291 1.0122 18 7 15.0191 4.0364 1.2763 19 14 13.1752 5.9752 1.9985 20 1 12.5437 5.4782 3.2473 21 1 14.2962 6.8875 2.3399 22 1 12.1672 6.7097 1.1925 23 6 10.9586 4.5398 1.1702 24 6 9.7629 3.5871 1.2683 25 8 5.3812 1.0524 -0.0059 26 7 4.2638 0.5913 -0.0010 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.6292 3.7595 -0.0002 33 1 7.4898 0.8071 -0.5305 34 1 9.0315 1.1257 0.3004 35 1 7.5165 1.0537 1.2321 36 1 8.6006 4.7031 -0.1621 37 1 10.1563 2.2325 -1.0532 38 1 9.2032 3.2916 -2.1209 39 1 10.6417 5.2011 -1.5803 40 1 11.6631 3.8452 -2.1194 41 1 15.5587 4.4244 1.9827 42 1 10.6030 5.5693 1.1292 43 1 11.6019 4.4097 2.0404 44 1 9.1426 3.8683 2.1193 45 1 10.1207 2.5659 1.4005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005722533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:55 Heat of formation + Delta-G solvation = 30.005543 kcal Electronic energy + Delta-G solvation = -27704.434281 eV Core-core repulsion = 23727.507825 eV Total energy + Delta-G solvation = -3976.926456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.27303 -40.18852 -39.36981 -37.84734 -35.53546 -33.82304 -32.85910 -32.00940 -31.53993 -30.51186 -30.29984 -27.14680 -25.77586 -24.45399 -23.71447 -23.25923 -22.84471 -21.70655 -20.66983 -19.27289 -18.41020 -18.28673 -17.25655 -16.93239 -16.62130 -16.38123 -15.91792 -15.36564 -15.22352 -14.86354 -14.24206 -14.12227 -13.87425 -13.80514 -13.53512 -13.28785 -13.16815 -13.15732 -13.00279 -12.40132 -12.34331 -12.22276 -11.99476 -11.85239 -11.64495 -11.59930 -10.99640 -10.93665 -10.61403 -10.40247 -10.23360 -10.15043 -10.01844 -9.79278 -9.65948 -9.47441 -8.73773 -8.63782 -7.02142 -5.95626 -3.34611 0.49326 1.78066 2.22813 2.31284 2.78420 3.03288 3.30895 3.48551 3.49842 3.75095 4.28718 4.42152 4.45210 4.50677 4.52102 4.74861 4.85660 4.90279 5.05509 5.11635 5.15272 5.18448 5.26583 5.33872 5.36279 5.45545 5.51946 5.58651 5.71538 5.75061 5.93463 5.97873 6.12753 6.21187 6.32713 6.52842 6.54458 6.56785 6.58186 6.61705 6.82078 7.16421 7.65462 7.85418 7.93130 8.30698 8.90509 9.69272 10.05724 11.20149 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.036331 B = 0.002446 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.514079 B =11445.304104 C =11606.916821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.158 4.158 6 C -0.049 4.049 7 C 0.599 3.401 8 O -0.512 6.512 9 N -0.591 5.591 10 C 0.070 3.930 11 C 0.144 3.856 12 C -0.141 4.141 13 C 0.152 3.848 14 N -0.607 5.607 15 C -0.260 4.260 16 H 0.087 0.913 17 C 0.021 3.979 18 N -0.911 5.911 19 Si 0.885 3.115 20 H -0.290 1.290 21 H -0.304 1.304 22 H -0.267 1.267 23 C 0.127 3.873 24 C -0.141 4.141 25 O 0.120 5.880 26 N -0.395 5.395 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.189 0.811 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.263 0.737 42 H 0.031 0.969 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.626 -8.237 -2.562 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.181 4.181 6 C -0.115 4.115 7 C 0.383 3.617 8 O -0.388 6.388 9 N -0.322 5.322 10 C -0.073 4.073 11 C 0.043 3.957 12 C -0.181 4.181 13 C 0.025 3.975 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.105 0.895 17 C -0.177 4.177 18 N -0.554 5.554 19 Si 0.716 3.284 20 H -0.218 1.218 21 H -0.232 1.232 22 H -0.191 1.191 23 C 0.001 3.999 24 C -0.181 4.181 25 O 0.054 5.946 26 N -0.119 5.119 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.207 0.793 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.808 -8.714 -2.528 27.356 hybrid contribution -0.538 1.148 0.742 1.469 sum -26.346 -7.566 -1.786 27.469 Atomic orbital electron populations 1.21801 0.92071 1.03288 1.03738 1.22852 0.95971 0.80449 1.02517 1.86224 1.12968 1.30368 1.89274 1.21817 0.85850 0.90454 1.00853 1.22176 0.90104 0.99291 1.06539 1.24140 0.96569 0.84266 1.06547 1.16584 0.81053 0.85960 0.78097 1.90876 1.84456 1.12981 1.50452 1.48074 1.05242 1.09457 1.69380 1.21970 1.04284 0.79291 1.01770 1.21325 0.83349 0.94436 0.96601 1.22420 0.97661 1.01721 0.96317 1.20882 0.91823 0.95737 0.89041 1.44392 1.05726 1.82578 1.00343 1.18929 0.81482 1.24632 1.13732 0.89538 1.25296 0.95289 0.98475 0.98666 1.69796 1.11656 1.41611 1.32362 0.86942 0.77371 0.84308 0.79770 1.21767 1.23243 1.19150 1.21374 0.91950 0.95449 0.91102 1.22426 0.97626 1.02365 0.95694 1.85102 1.22455 1.18661 1.68367 1.73983 0.90668 1.22365 1.24915 0.89877 0.91301 0.91291 0.91479 0.91482 0.79333 0.91221 0.88881 0.91735 0.88136 0.91284 0.92194 0.95576 0.91288 0.92758 0.95067 0.90739 0.92308 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.16 0.38 -0.36 16 2 C 0.06 0.42 6.38 37.16 0.24 0.66 16 3 O -0.28 -2.87 10.21 -18.91 -0.19 -3.06 16 4 C 0.21 2.34 8.00 -16.72 -0.13 2.21 16 5 C -0.16 -1.76 10.97 -38.77 -0.43 -2.18 16 6 C -0.05 -0.58 6.96 -36.36 -0.25 -0.84 16 7 C 0.60 8.28 7.67 -12.47 -0.10 8.19 16 8 O -0.51 -8.51 16.25 5.30 0.09 -8.42 16 9 N -0.59 -7.78 2.76 -175.12 -0.48 -8.27 16 10 C 0.07 0.73 8.24 59.84 0.49 1.22 16 11 C 0.14 2.22 2.42 -67.89 -0.16 2.05 16 12 C -0.14 -2.15 5.33 -26.61 -0.14 -2.30 16 13 C 0.15 2.83 6.52 -3.71 -0.02 2.80 16 14 N -0.61 -13.79 2.79 -172.32 -0.48 -14.27 16 15 C -0.26 -7.02 10.07 -15.06 -0.15 -7.17 16 16 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 17 C 0.02 0.61 5.30 -17.43 -0.09 0.52 16 18 N -0.91 -27.52 13.97 55.49 0.78 -26.74 16 19 Si 0.89 22.10 24.31 -169.99 -4.13 17.97 16 20 H -0.29 -7.00 6.74 56.52 0.38 -6.62 16 21 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 22 H -0.27 -6.50 6.13 56.52 0.35 -6.15 16 23 C 0.13 2.68 4.15 -3.70 -0.02 2.66 16 24 C -0.14 -2.37 5.33 -26.61 -0.14 -2.52 16 25 O 0.12 1.36 8.19 15.48 0.13 1.49 16 26 N -0.39 -4.61 11.50 30.47 0.35 -4.26 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.19 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.07 0.65 6.84 -51.92 -0.35 0.29 16 34 H 0.09 0.98 6.08 -51.93 -0.32 0.67 16 35 H 0.06 0.61 7.85 -51.93 -0.41 0.20 16 36 H 0.10 1.70 6.91 -51.93 -0.36 1.34 16 37 H 0.07 1.04 7.06 -51.93 -0.37 0.68 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.03 0.66 6.80 -51.93 -0.35 0.31 16 43 H 0.07 1.72 4.34 -51.93 -0.23 1.49 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 1.17 7.14 -51.93 -0.37 0.80 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -31.65 358.06 -5.68 -37.34 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.60 Total: -2.11 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -0.53 Total: 4.95 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.16 Total: -53.54 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.02 Total: -10.00 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.13 Total: 17.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.65 -5.68 -37.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005722533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.341 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds