Wall clock time and date at job start Tue Mar 31 2020 14:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46777 * 2 1 4 4 C 1.35362 * 116.99535 * 180.02562 * 3 2 1 5 5 N 1.30543 * 125.44502 * 179.97438 * 4 3 2 6 6 C 1.36322 * 108.38524 * 179.97438 * 5 4 3 7 7 C 1.47368 * 126.41469 * 179.97438 * 6 5 4 8 8 O 1.21624 * 119.99913 * 180.02562 * 7 6 5 9 9 N 1.34768 * 120.00020 * 0.02771 * 7 6 5 10 10 C 1.46507 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47183 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.69701 * 60.12874 * 11 10 9 13 13 C 1.53618 * 109.66109 * 180.71835 * 11 10 9 14 14 C 1.53046 * 109.23872 * 174.54771 * 13 11 10 15 15 C 1.53040 * 109.54141 * 298.51768 * 14 13 11 16 16 C 1.53187 * 109.31173 * 61.35910 * 15 14 13 17 17 N 1.46918 * 108.78192 * 305.36766 * 16 15 14 18 18 C 1.36938 * 120.63258 * 233.58751 * 17 16 15 19 19 H 1.08007 * 119.99703 * 148.83871 * 18 17 16 20 20 C 1.38801 * 119.99987 * 329.11486 * 18 17 16 21 21 N 1.31620 * 120.00219 * 162.69578 * 20 18 17 22 22 Si 1.86799 * 120.00209 * 342.69594 * 20 18 17 23 23 H 1.48511 * 109.47033 * 88.90193 * 22 20 18 24 24 H 1.48497 * 109.47543 * 208.90297 * 22 20 18 25 25 H 1.48502 * 109.47076 * 328.90805 * 22 20 18 26 26 C 1.35920 * 107.17407 * 0.22775 * 6 5 4 27 27 O 1.34196 * 125.44510 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.46753 * 299.99060 * 1 2 3 29 29 H 1.08993 * 109.47318 * 59.99617 * 1 2 3 30 30 H 1.09003 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46544 * 240.00497 * 2 1 3 32 32 H 1.08993 * 109.47318 * 120.00383 * 2 1 3 33 33 H 0.97001 * 120.00418 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47031 * 60.00007 * 10 9 7 35 35 H 1.09001 * 109.47135 * 299.99777 * 10 9 7 36 36 H 1.09001 * 109.63646 * 54.56330 * 13 11 10 37 37 H 1.09002 * 109.46519 * 294.43478 * 13 11 10 38 38 H 1.09005 * 109.46279 * 178.49100 * 14 13 11 39 39 H 1.09007 * 109.44566 * 58.53148 * 14 13 11 40 40 H 1.09007 * 109.49450 * 301.41026 * 15 14 13 41 41 H 1.09001 * 109.52343 * 181.33531 * 15 14 13 42 42 H 1.09006 * 109.58208 * 185.57972 * 16 15 14 43 43 H 1.09006 * 109.70266 * 65.23127 * 16 15 14 44 44 H 0.96999 * 120.00102 * 180.02562 * 21 20 18 45 45 H 1.07996 * 126.45656 * 179.77034 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6781 -0.0011 6 6 5.3038 2.4524 -0.0009 7 6 6.3630 3.4771 -0.0020 8 8 7.5324 3.1429 -0.0022 9 7 6.0357 4.7844 -0.0026 10 6 7.0887 5.8031 -0.0031 11 6 6.4522 7.1945 -0.0044 12 1 5.8342 7.3167 0.8851 13 6 7.5526 8.2662 -0.0230 14 6 6.9087 9.6477 -0.1615 15 6 6.1399 9.7241 -1.4826 16 6 5.0282 8.6702 -1.4835 17 7 5.6226 7.3555 -1.2063 18 6 5.4029 6.2988 -2.0491 19 1 6.1604 5.5385 -2.1706 20 6 4.2093 6.2078 -2.7517 21 7 4.1192 5.4117 -3.7959 22 14 2.7307 7.2154 -2.2152 23 1 2.7641 8.5397 -2.8866 24 1 1.4833 6.5020 -2.5896 25 1 2.7692 7.4059 -0.7430 26 6 5.4846 1.1053 -0.0054 27 8 4.2630 0.5427 -0.0006 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.1031 5.0510 -0.0028 34 1 7.7071 5.6860 -0.8929 35 1 7.7070 5.6869 0.8870 36 1 8.2210 8.0903 -0.8658 37 1 8.1197 8.2207 0.9067 38 1 7.6848 10.4131 -0.1482 39 1 6.2217 9.8128 0.6685 40 1 6.8217 9.5344 -2.3117 41 1 5.7013 10.7159 -1.5920 42 1 4.5418 8.6530 -2.4588 43 1 4.2946 8.9093 -0.7135 44 1 3.2852 5.3484 -4.2870 45 1 6.4308 0.5848 -0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024532655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:01 Heat of formation + Delta-G solvation = -18.855273 kcal Electronic energy + Delta-G solvation = -28444.959048 eV Core-core repulsion = 24465.913828 eV Total energy + Delta-G solvation = -3979.045220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.20176 -39.21707 -38.81641 -37.82621 -34.68103 -34.21316 -32.95780 -32.07557 -30.86079 -30.60128 -29.30035 -26.35155 -24.91666 -23.89428 -23.14212 -22.61004 -22.05778 -20.71334 -20.06786 -19.42750 -18.65432 -17.42829 -17.02867 -16.43572 -16.07521 -15.67714 -15.53810 -15.23074 -14.91648 -14.81063 -13.90664 -13.69969 -13.65449 -13.47222 -13.17826 -13.11875 -13.04195 -12.94964 -12.41391 -12.06523 -11.98969 -11.95063 -11.58120 -11.41547 -11.25452 -10.76307 -10.68020 -10.59073 -10.44131 -10.38610 -10.14647 -9.88800 -9.71619 -9.44503 -9.35870 -8.62156 -8.49608 -8.15685 -6.85803 -5.88248 -3.29460 1.38621 2.02615 2.39063 2.86946 3.36339 3.54428 3.55475 3.69025 3.91156 4.58250 4.59428 4.60235 4.76363 4.88934 4.91258 5.10781 5.25374 5.31698 5.39291 5.46213 5.47848 5.51584 5.58275 5.71309 5.77870 5.80746 5.91001 6.00508 6.04317 6.16609 6.24331 6.26730 6.43681 6.46611 6.51941 6.61875 6.75492 6.79543 6.80588 7.02972 7.15770 7.75229 8.02500 8.30858 8.41807 8.83467 8.98546 9.77085 10.14050 11.26656 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.004336 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.128242 B = 6456.344616 C = 7818.496294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.245 6.245 4 C 0.376 3.624 5 N -0.439 5.439 6 C -0.027 4.027 7 C 0.597 3.403 8 O -0.560 6.560 9 N -0.670 5.670 10 C 0.134 3.866 11 C 0.162 3.838 12 H 0.037 0.963 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.135 4.135 16 C 0.125 3.875 17 N -0.604 5.604 18 C -0.265 4.265 19 H 0.092 0.908 20 C 0.035 3.965 21 N -0.902 5.902 22 Si 0.883 3.117 23 H -0.291 1.291 24 H -0.305 1.305 25 H -0.271 1.271 26 C -0.015 4.015 27 O -0.231 6.231 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.421 0.579 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 -6.708 9.843 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.153 6.153 4 C 0.129 3.871 5 N -0.183 5.183 6 C -0.146 4.146 7 C 0.381 3.619 8 O -0.440 6.440 9 N -0.319 5.319 10 C 0.010 3.990 11 C 0.056 3.944 12 H 0.055 0.945 13 C -0.167 4.167 14 C -0.146 4.146 15 C -0.174 4.174 16 C 0.000 4.000 17 N -0.330 5.330 18 C -0.393 4.393 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.545 5.545 22 Si 0.715 3.285 23 H -0.219 1.219 24 H -0.234 1.234 25 H -0.196 1.196 26 C -0.087 4.087 27 O -0.122 6.122 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.260 0.740 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.658 -6.342 9.708 11.714 hybrid contribution -1.180 -0.147 -0.055 1.191 sum -2.838 -6.489 9.653 11.972 Atomic orbital electron populations 1.21802 0.91501 1.03347 1.04263 1.22988 0.96696 0.79825 1.02797 1.86399 1.09223 1.30260 1.89440 1.23303 0.83319 0.81649 0.98791 1.71224 1.04057 1.21072 1.21981 1.21783 0.90275 0.93975 1.08585 1.16584 0.85821 0.82118 0.77335 1.90759 1.17995 1.81817 1.53450 1.45805 1.12191 1.04031 1.69912 1.21340 0.89895 0.86493 1.01288 1.20840 0.91696 0.91721 0.90177 0.94502 1.22005 0.98222 0.95406 1.01092 1.21369 0.98811 0.96511 0.97894 1.22003 0.99369 0.98526 0.97551 1.21372 0.93797 0.85297 0.99533 1.44409 1.58376 1.06354 1.23823 1.18917 0.99932 1.02306 1.18099 0.89081 1.25289 0.97244 0.96887 0.97122 1.69795 1.26475 1.40238 1.17954 0.86985 0.83547 0.78566 0.79449 1.21871 1.23372 1.19585 1.24825 0.85619 0.92990 1.05269 1.84332 1.16273 1.39304 1.72315 0.91071 0.90876 0.89678 0.90909 0.91061 0.73997 0.90886 0.92087 0.91558 0.92572 0.93098 0.92771 0.91806 0.93122 0.90953 0.95898 0.92904 0.75067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.51 6.38 37.16 0.24 0.75 16 3 O -0.24 -3.70 10.19 -41.01 -0.42 -4.11 16 4 C 0.38 6.45 8.98 52.21 0.47 6.91 16 5 N -0.44 -8.88 11.10 -11.72 -0.13 -9.01 16 6 C -0.03 -0.51 6.99 -82.99 -0.58 -1.09 16 7 C 0.60 12.40 7.81 -12.55 -0.10 12.30 16 8 O -0.56 -12.16 16.89 5.26 0.09 -12.07 16 9 N -0.67 -14.00 3.84 -61.39 -0.24 -14.24 16 10 C 0.13 2.56 4.44 -4.04 -0.02 2.54 16 11 C 0.16 3.06 3.03 -67.38 -0.20 2.86 16 12 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 13 C -0.13 -2.03 5.40 -26.39 -0.14 -2.17 16 14 C -0.11 -1.65 5.88 -26.69 -0.16 -1.80 16 15 C -0.14 -2.36 6.08 -26.61 -0.16 -2.52 16 16 C 0.13 2.68 4.19 -3.72 -0.02 2.66 16 17 N -0.60 -13.70 2.71 -164.53 -0.45 -14.15 16 18 C -0.26 -7.03 7.42 -15.06 -0.11 -7.14 16 19 H 0.09 2.65 6.07 -52.48 -0.32 2.34 16 20 C 0.03 0.98 5.27 -17.43 -0.09 0.89 16 21 N -0.90 -27.50 13.97 55.49 0.78 -26.73 16 22 Si 0.88 22.55 24.32 -169.99 -4.13 18.42 16 23 H -0.29 -7.19 6.51 56.52 0.37 -6.82 16 24 H -0.31 -8.09 7.11 56.52 0.40 -7.69 16 25 H -0.27 -6.77 6.75 56.52 0.38 -6.39 16 26 C -0.02 -0.23 11.93 29.90 0.36 0.13 16 27 O -0.23 -3.42 10.20 -17.75 -0.18 -3.60 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.42 9.46 7.12 -40.82 -0.29 9.17 16 34 H 0.07 1.54 7.42 -51.93 -0.39 1.15 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.71 4.64 -51.93 -0.24 1.47 16 43 H 0.02 0.49 7.05 -51.93 -0.37 0.12 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.23 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -33.17 362.17 -6.07 -39.23 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.71 Total: 7.25 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -0.14 Total: 13.55 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.04 Total: -64.12 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.51 Total: -19.78 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.13 Total: 18.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.17 -6.07 -39.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024532655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.378 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds