Wall clock time and date at job start Tue Mar 31 2020 14:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46777 * 2 1 4 4 C 1.35362 * 116.99535 * 180.02562 * 3 2 1 5 5 N 1.30543 * 125.44502 * 179.97438 * 4 3 2 6 6 C 1.36322 * 108.38524 * 179.97438 * 5 4 3 7 7 C 1.47368 * 126.41469 * 179.97438 * 6 5 4 8 8 O 1.21624 * 119.99913 * 180.02562 * 7 6 5 9 9 N 1.34768 * 120.00020 * 0.02771 * 7 6 5 10 10 C 1.46507 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47183 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.69701 * 60.12874 * 11 10 9 13 13 C 1.53618 * 109.66109 * 180.71835 * 11 10 9 14 14 C 1.53046 * 109.23872 * 174.54771 * 13 11 10 15 15 C 1.53040 * 109.54141 * 298.51768 * 14 13 11 16 16 C 1.53187 * 109.31173 * 61.35910 * 15 14 13 17 17 N 1.46918 * 108.78192 * 305.36766 * 16 15 14 18 18 C 1.36938 * 120.63258 * 233.58751 * 17 16 15 19 19 H 1.08007 * 119.99703 * 148.83871 * 18 17 16 20 20 C 1.38801 * 119.99987 * 329.11486 * 18 17 16 21 21 N 1.31620 * 120.00219 * 162.69578 * 20 18 17 22 22 Si 1.86799 * 120.00209 * 342.69594 * 20 18 17 23 23 H 1.48511 * 109.47033 * 88.90193 * 22 20 18 24 24 H 1.48497 * 109.47543 * 208.90297 * 22 20 18 25 25 H 1.48502 * 109.47076 * 328.90805 * 22 20 18 26 26 C 1.35920 * 107.17407 * 0.22775 * 6 5 4 27 27 O 1.34196 * 125.44510 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.46753 * 299.99060 * 1 2 3 29 29 H 1.08993 * 109.47318 * 59.99617 * 1 2 3 30 30 H 1.09003 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46544 * 240.00497 * 2 1 3 32 32 H 1.08993 * 109.47318 * 120.00383 * 2 1 3 33 33 H 0.97001 * 120.00418 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47031 * 60.00007 * 10 9 7 35 35 H 1.09001 * 109.47135 * 299.99777 * 10 9 7 36 36 H 1.09001 * 109.63646 * 54.56330 * 13 11 10 37 37 H 1.09002 * 109.46519 * 294.43478 * 13 11 10 38 38 H 1.09005 * 109.46279 * 178.49100 * 14 13 11 39 39 H 1.09007 * 109.44566 * 58.53148 * 14 13 11 40 40 H 1.09007 * 109.49450 * 301.41026 * 15 14 13 41 41 H 1.09001 * 109.52343 * 181.33531 * 15 14 13 42 42 H 1.09006 * 109.58208 * 185.57972 * 16 15 14 43 43 H 1.09006 * 109.70266 * 65.23127 * 16 15 14 44 44 H 0.96999 * 120.00102 * 180.02562 * 21 20 18 45 45 H 1.07996 * 126.45656 * 179.77034 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6781 -0.0011 6 6 5.3038 2.4524 -0.0009 7 6 6.3630 3.4771 -0.0020 8 8 7.5324 3.1429 -0.0022 9 7 6.0357 4.7844 -0.0026 10 6 7.0887 5.8031 -0.0031 11 6 6.4522 7.1945 -0.0044 12 1 5.8342 7.3167 0.8851 13 6 7.5526 8.2662 -0.0230 14 6 6.9087 9.6477 -0.1615 15 6 6.1399 9.7241 -1.4826 16 6 5.0282 8.6702 -1.4835 17 7 5.6226 7.3555 -1.2063 18 6 5.4029 6.2988 -2.0491 19 1 6.1604 5.5385 -2.1706 20 6 4.2093 6.2078 -2.7517 21 7 4.1192 5.4117 -3.7959 22 14 2.7307 7.2154 -2.2152 23 1 2.7641 8.5397 -2.8866 24 1 1.4833 6.5020 -2.5896 25 1 2.7692 7.4059 -0.7430 26 6 5.4846 1.1053 -0.0054 27 8 4.2630 0.5427 -0.0006 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.1031 5.0510 -0.0028 34 1 7.7071 5.6860 -0.8929 35 1 7.7070 5.6869 0.8870 36 1 8.2210 8.0903 -0.8658 37 1 8.1197 8.2207 0.9067 38 1 7.6848 10.4131 -0.1482 39 1 6.2217 9.8128 0.6685 40 1 6.8217 9.5344 -2.3117 41 1 5.7013 10.7159 -1.5920 42 1 4.5418 8.6530 -2.4588 43 1 4.2946 8.9093 -0.7135 44 1 3.2852 5.3484 -4.2870 45 1 6.4308 0.5848 -0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024532655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:00 Heat of formation + Delta-G solvation = -45.856140 kcal Electronic energy + Delta-G solvation = -28446.129893 eV Core-core repulsion = 24465.913828 eV Total energy + Delta-G solvation = -3980.216065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.50230 -40.76134 -39.97303 -39.40043 -36.06111 -35.75210 -34.84487 -32.92013 -32.58608 -32.25155 -30.58119 -27.93224 -26.64360 -24.96822 -24.41880 -24.27579 -23.28956 -22.17180 -21.54972 -20.91605 -20.05193 -18.66257 -18.62113 -18.06745 -17.48341 -17.25175 -16.81631 -16.72577 -16.51257 -16.02636 -15.51816 -15.27895 -15.17786 -14.91712 -14.78798 -14.46888 -14.27872 -13.94044 -13.70844 -13.62293 -13.58387 -13.20652 -12.94345 -12.69551 -12.55409 -12.47913 -12.27900 -11.95428 -11.82143 -11.77981 -11.69521 -11.55456 -11.39888 -11.19368 -11.04032 -10.59535 -9.98321 -9.66952 -8.76538 -8.07354 -5.42274 0.07062 0.83204 0.98636 1.29846 1.43305 1.49256 1.72252 2.18318 2.39857 2.46807 3.12536 3.33458 3.46148 3.76295 3.90366 3.92365 3.95886 4.09510 4.11305 4.19745 4.24216 4.34158 4.41599 4.45171 4.53382 4.63307 4.66530 4.73924 4.83426 4.85006 4.89012 4.96256 5.08478 5.14996 5.18779 5.27588 5.32626 5.33475 5.53990 5.64989 5.66332 5.97129 6.26461 6.40793 6.69269 6.98982 7.19536 7.70087 8.10286 9.11766 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.004336 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.128242 B = 6456.344616 C = 7818.496294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.261 6.261 4 C 0.379 3.621 5 N -0.486 5.486 6 C -0.073 4.073 7 C 0.594 3.406 8 O -0.576 6.576 9 N -0.679 5.679 10 C 0.135 3.865 11 C 0.159 3.841 12 H 0.049 0.951 13 C -0.122 4.122 14 C -0.104 4.104 15 C -0.129 4.129 16 C 0.118 3.882 17 N -0.618 5.618 18 C -0.225 4.225 19 H 0.059 0.941 20 C -0.023 4.023 21 N -0.954 5.954 22 Si 0.938 3.062 23 H -0.279 1.279 24 H -0.324 1.324 25 H -0.261 1.261 26 C 0.023 3.977 27 O -0.213 6.213 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.412 0.588 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.030 0.970 44 H 0.255 0.745 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 -6.237 12.041 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.171 6.171 4 C 0.132 3.868 5 N -0.232 5.232 6 C -0.191 4.191 7 C 0.380 3.620 8 O -0.459 6.459 9 N -0.326 5.326 10 C 0.012 3.988 11 C 0.054 3.946 12 H 0.067 0.933 13 C -0.161 4.161 14 C -0.141 4.141 15 C -0.168 4.168 16 C -0.007 4.007 17 N -0.344 5.344 18 C -0.355 4.355 19 H 0.076 0.924 20 C -0.218 4.218 21 N -0.601 5.601 22 Si 0.769 3.231 23 H -0.206 1.206 24 H -0.254 1.254 25 H -0.186 1.186 26 C -0.049 4.049 27 O -0.104 6.104 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.249 0.751 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -1.220 -5.829 11.951 13.353 hybrid contribution -1.260 -0.396 -0.692 1.491 sum -2.480 -6.225 11.259 13.102 Atomic orbital electron populations 1.21869 0.89766 1.05210 1.03653 1.23467 0.98024 0.77763 1.04171 1.86431 1.07969 1.33507 1.89161 1.23277 0.84211 0.81466 0.97809 1.71072 1.04993 1.23192 1.23911 1.21693 0.89863 0.95139 1.12429 1.16844 0.86155 0.82391 0.76615 1.90723 1.18621 1.82079 1.54433 1.45881 1.11880 1.04679 1.70157 1.21418 0.89589 0.86600 1.01208 1.21096 0.92237 0.92583 0.88709 0.93297 1.21965 0.97026 0.94662 1.02427 1.21377 0.99524 0.96625 0.96577 1.21923 0.97971 0.98172 0.98770 1.21429 0.95347 0.85756 0.98142 1.44565 1.58936 1.06074 1.24819 1.18691 0.98213 1.01888 1.16718 0.92382 1.25794 0.99680 0.98641 0.97694 1.69930 1.26617 1.43496 1.20031 0.86088 0.79996 0.77570 0.79454 1.20596 1.25375 1.18572 1.25552 0.86637 0.91817 1.00921 1.84377 1.15906 1.38341 1.71776 0.91120 0.92039 0.86474 0.90162 0.89019 0.75117 0.93552 0.89402 0.92746 0.89143 0.90049 0.91590 0.93115 0.90601 0.93764 0.95192 0.93642 0.71193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.04 0.73 6.38 71.98 0.46 1.19 16 3 O -0.26 -7.89 10.19 -64.32 -0.66 -8.55 16 4 C 0.38 13.03 8.98 130.43 1.17 14.20 16 5 N -0.49 -20.20 11.10 -419.40 -4.65 -24.86 16 6 C -0.07 -2.84 6.99 40.31 0.28 -2.56 16 7 C 0.59 25.21 7.81 86.65 0.68 25.89 16 8 O -0.58 -25.23 16.89 -4.11 -0.07 -25.30 16 9 N -0.68 -29.03 3.84 -466.40 -1.79 -30.82 16 10 C 0.14 5.16 4.44 86.38 0.38 5.55 16 11 C 0.16 5.77 3.03 45.12 0.14 5.91 16 12 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 13 C -0.12 -3.48 5.40 30.82 0.17 -3.32 16 14 C -0.10 -2.71 5.88 30.62 0.18 -2.53 16 15 C -0.13 -4.17 6.08 30.67 0.19 -3.98 16 16 C 0.12 4.88 4.19 86.36 0.36 5.25 16 17 N -0.62 -27.85 2.71 -674.45 -1.83 -29.68 16 18 C -0.23 -12.35 7.42 84.03 0.62 -11.72 16 19 H 0.06 3.56 6.07 -2.91 -0.02 3.54 16 20 C -0.02 -1.36 5.27 84.86 0.45 -0.91 16 21 N -0.95 -61.01 13.97 21.65 0.30 -60.71 16 22 Si 0.94 47.98 24.32 68.60 1.67 49.65 16 23 H -0.28 -13.52 6.51 99.48 0.65 -12.88 16 24 H -0.32 -17.40 7.11 99.48 0.71 -16.69 16 25 H -0.26 -12.73 6.75 99.48 0.67 -12.05 16 26 C 0.02 0.68 11.93 67.28 0.80 1.48 16 27 O -0.21 -6.04 10.20 18.92 0.19 -5.85 16 28 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.41 19.11 7.12 -92.71 -0.66 18.45 16 34 H 0.05 2.01 7.42 -2.39 -0.02 1.99 16 35 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.04 2.08 4.64 -2.38 -0.01 2.07 16 43 H 0.03 1.21 7.05 -2.38 -0.02 1.19 16 44 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 45 H 0.27 5.43 8.06 -2.91 -0.02 5.41 16 Total: -1.00 -76.22 362.17 0.04 -76.19 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.26 Total: 26.78 kcal Atomic # 6 Polarization: 26.53 SS G_CDS: 6.62 Total: 33.15 kcal Atomic # 7 Polarization: -138.09 SS G_CDS: -7.97 Total: -146.07 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.53 Total: -39.69 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.67 Total: 49.65 kcal Total: -76.22 0.04 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024532655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.332 kcal (2) G-P(sol) polarization free energy of solvation -76.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds