Wall clock time and date at job start Tue Mar 31 2020 14:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47386 * 2 1 4 4 C 1.35353 * 116.99783 * 179.97438 * 3 2 1 5 5 N 1.30553 * 125.44230 * 180.02562 * 4 3 2 6 6 C 1.36328 * 108.38483 * 179.97438 * 5 4 3 7 7 C 1.47366 * 126.42046 * 179.97438 * 6 5 4 8 8 O 1.21621 * 120.00568 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99405 * 0.03198 * 7 6 5 10 10 C 1.46498 * 119.99890 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47235 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.69930 * 299.94444 * 11 10 9 13 13 C 1.52763 * 109.51286 * 179.83088 * 11 10 9 14 14 C 1.53039 * 109.38284 * 185.70540 * 13 11 10 15 15 C 1.53037 * 109.53900 * 61.24025 * 14 13 11 16 16 C 1.53193 * 109.31256 * 298.63045 * 15 14 13 17 17 N 1.46928 * 108.77261 * 54.63979 * 16 15 14 18 18 C 1.36932 * 120.63396 * 126.36889 * 17 16 15 19 19 H 1.07995 * 119.99867 * 211.60831 * 18 17 16 20 20 C 1.38811 * 119.99511 * 31.60924 * 18 17 16 21 21 N 1.31619 * 120.00407 * 12.52937 * 20 18 17 22 22 Si 1.86806 * 119.99778 * 192.52792 * 20 18 17 23 23 H 1.48503 * 109.47334 * 270.00217 * 22 20 18 24 24 H 1.48500 * 109.46809 * 29.99840 * 22 20 18 25 25 H 1.48502 * 109.47204 * 149.99981 * 22 20 18 26 26 C 1.35919 * 107.17207 * 0.23956 * 6 5 4 27 27 O 1.34193 * 125.44907 * 359.97438 * 4 3 2 28 28 H 1.08995 * 109.47339 * 300.00567 * 1 2 3 29 29 H 1.09001 * 109.46824 * 60.00077 * 1 2 3 30 30 H 1.08995 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47516 * 239.99614 * 2 1 3 32 32 H 1.09001 * 109.46824 * 119.99923 * 2 1 3 33 33 H 0.97001 * 120.00331 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47588 * 59.99533 * 10 9 7 35 35 H 1.08997 * 109.46833 * 299.99815 * 10 9 7 36 36 H 1.09002 * 109.56636 * 65.66849 * 13 11 10 37 37 H 1.09004 * 109.35761 * 305.61437 * 13 11 10 38 38 H 1.08998 * 109.45979 * 301.21221 * 14 13 11 39 39 H 1.09008 * 109.44872 * 181.25133 * 14 13 11 40 40 H 1.08997 * 109.49524 * 178.68054 * 15 14 13 41 41 H 1.08999 * 109.49644 * 58.58576 * 15 14 13 42 42 H 1.08999 * 109.58505 * 294.84900 * 16 15 14 43 43 H 1.08993 * 109.70098 * 174.49198 * 16 15 14 44 44 H 0.97001 * 119.99788 * 180.02562 * 21 20 18 45 45 H 1.07997 * 126.45797 * 179.72495 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3483 1.5245 0.0005 5 7 3.9595 2.6781 0.0011 6 6 5.3040 2.4523 0.0021 7 6 6.3632 3.4768 0.0025 8 8 7.5326 3.1426 0.0029 9 7 6.0360 4.7843 0.0024 10 6 7.0889 5.8029 0.0022 11 6 6.4525 7.1942 0.0016 12 1 5.8340 7.3149 -0.8878 13 6 7.5497 8.2571 0.0056 14 6 6.9145 9.6422 0.1485 15 6 6.1563 9.7231 1.4753 16 6 5.0387 8.6755 1.4850 17 7 5.6237 7.3574 1.2038 18 6 5.4054 6.3024 2.0491 19 1 6.1626 5.5420 2.1703 20 6 4.2108 6.2105 2.7500 21 7 3.1971 6.9855 2.4274 22 14 4.0420 4.9868 4.1513 23 1 3.5428 3.6926 3.6210 24 1 5.3661 4.7816 4.7915 25 1 3.0829 5.5133 5.1554 26 6 5.4846 1.1051 -0.0033 27 8 4.2630 0.5426 0.0016 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.1033 5.0509 0.0018 34 1 7.7072 5.6862 -0.8878 35 1 7.7073 5.6862 0.8921 36 1 8.1090 8.2080 -0.9287 37 1 8.2235 8.0777 0.8434 38 1 6.2223 9.8110 -0.6764 39 1 7.6949 10.4031 0.1291 40 1 5.7239 10.7174 1.5871 41 1 6.8433 9.5299 2.2993 42 1 4.3025 8.9195 0.7191 43 1 4.5575 8.6606 2.4628 44 1 2.3625 6.9214 2.9175 45 1 6.4309 0.5846 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024532656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:04 Heat of formation + Delta-G solvation = -24.833107 kcal Electronic energy + Delta-G solvation = -28434.692106 eV Core-core repulsion = 24455.387668 eV Total energy + Delta-G solvation = -3979.304438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.26441 -39.21694 -38.82333 -37.61483 -34.73824 -34.11655 -32.98274 -32.10733 -30.70591 -29.83996 -29.34142 -26.20337 -24.99651 -23.93429 -23.19228 -22.16108 -22.00796 -20.65322 -20.07635 -19.13579 -18.68896 -17.48302 -17.05793 -16.41906 -16.01741 -15.70556 -15.48210 -15.23195 -14.90849 -14.25122 -13.96709 -13.69821 -13.53772 -13.31571 -13.14082 -13.07520 -12.97522 -12.75983 -12.37573 -11.99508 -11.96522 -11.75881 -11.44441 -11.16655 -10.89023 -10.73282 -10.68676 -10.49461 -10.47069 -10.23085 -10.08252 -9.92503 -9.75506 -9.43442 -9.28456 -8.60595 -8.46484 -8.14829 -6.55439 -5.74730 -3.20801 1.31606 1.97708 2.33098 2.81569 3.40870 3.47872 3.49652 3.68601 3.83173 4.52788 4.56245 4.56866 4.74818 4.87549 5.04237 5.22491 5.30578 5.42313 5.45467 5.47218 5.57057 5.65325 5.69483 5.74641 5.75245 5.97951 6.03042 6.11597 6.19753 6.35492 6.40637 6.46047 6.64127 6.74997 6.76842 6.78653 6.91364 7.02788 7.17072 7.45129 7.70529 7.73276 7.88027 8.30676 8.50304 8.81565 9.26114 9.87167 10.44912 11.32870 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.004266 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.072432 B = 6561.770976 C = 7608.318372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.243 6.243 4 C 0.375 3.625 5 N -0.437 5.437 6 C -0.031 4.031 7 C 0.591 3.409 8 O -0.561 6.561 9 N -0.669 5.669 10 C 0.133 3.867 11 C 0.160 3.840 12 H 0.032 0.968 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.144 4.144 16 C 0.174 3.826 17 N -0.588 5.588 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.017 3.983 21 N -0.896 5.896 22 Si 0.891 3.109 23 H -0.286 1.286 24 H -0.281 1.281 25 H -0.290 1.290 26 C -0.016 4.016 27 O -0.231 6.231 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.426 0.574 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.085 0.915 44 H 0.253 0.747 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 -9.914 -6.565 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.152 6.152 4 C 0.129 3.871 5 N -0.181 5.181 6 C -0.150 4.150 7 C 0.376 3.624 8 O -0.442 6.442 9 N -0.319 5.319 10 C 0.009 3.991 11 C 0.053 3.947 12 H 0.050 0.950 13 C -0.167 4.167 14 C -0.145 4.145 15 C -0.184 4.184 16 C 0.048 3.952 17 N -0.312 5.312 18 C -0.383 4.383 19 H 0.085 0.915 20 C -0.183 4.183 21 N -0.539 5.539 22 Si 0.721 3.279 23 H -0.213 1.213 24 H -0.207 1.207 25 H -0.216 1.216 26 C -0.088 4.088 27 O -0.123 6.123 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.266 0.734 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.501 -9.443 -6.484 11.466 hybrid contribution -0.388 -1.358 0.923 1.687 sum -0.889 -10.801 -5.561 12.181 Atomic orbital electron populations 1.21801 0.91414 1.03356 1.04344 1.22999 0.96781 0.79804 1.02757 1.86415 1.09128 1.30249 1.89372 1.23360 0.83384 0.81628 0.98717 1.71295 1.03943 1.20959 1.21931 1.21862 0.90387 0.94024 1.08741 1.16645 0.85822 0.82240 0.77729 1.90759 1.17944 1.81855 1.53609 1.45920 1.12668 1.03906 1.69371 1.21385 0.89785 0.87026 1.00931 1.20643 0.91868 0.90912 0.91304 0.95050 1.21869 0.98349 0.95956 1.00505 1.21359 0.98636 0.96018 0.98463 1.22200 1.00169 0.99524 0.96457 1.20759 0.90913 0.82090 1.01411 1.44043 1.57875 1.07013 1.22261 1.19091 0.97997 1.02649 1.18530 0.91503 1.25009 0.95029 0.98095 1.00154 1.69978 1.02334 1.40846 1.40775 0.86472 0.77407 0.81551 0.82515 1.21251 1.20656 1.21644 1.24846 0.85649 0.93004 1.05344 1.84338 1.16274 1.39349 1.72308 0.90885 0.90960 0.89669 0.91003 0.91019 0.73429 0.92332 0.91248 0.93004 0.92080 0.92877 0.93765 0.93593 0.92860 0.96407 0.89666 0.93676 0.75035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.50 6.38 37.16 0.24 0.74 16 3 O -0.24 -3.65 10.19 -40.98 -0.42 -4.07 16 4 C 0.38 6.36 8.98 52.22 0.47 6.83 16 5 N -0.44 -8.75 11.10 -11.72 -0.13 -8.88 16 6 C -0.03 -0.57 6.99 -82.99 -0.58 -1.15 16 7 C 0.59 12.07 7.81 -12.54 -0.10 11.97 16 8 O -0.56 -11.94 16.89 5.26 0.09 -11.85 16 9 N -0.67 -14.02 3.85 -61.40 -0.24 -14.25 16 10 C 0.13 2.59 4.42 -4.04 -0.02 2.58 16 11 C 0.16 3.20 2.99 -67.82 -0.20 3.00 16 12 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 13 C -0.13 -2.18 5.35 -26.83 -0.14 -2.32 16 14 C -0.11 -1.79 5.88 -26.69 -0.16 -1.95 16 15 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 16 C 0.17 4.03 5.26 -3.71 -0.02 4.02 16 17 N -0.59 -13.95 2.98 -165.03 -0.49 -14.44 16 18 C -0.25 -6.61 6.97 -15.06 -0.10 -6.71 16 19 H 0.07 1.80 5.86 -52.49 -0.31 1.49 16 20 C 0.02 0.46 5.00 -17.43 -0.09 0.37 16 21 N -0.90 -25.38 11.18 55.49 0.62 -24.76 16 22 Si 0.89 22.36 29.57 -169.99 -5.03 17.34 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 C -0.02 -0.24 11.93 29.90 0.36 0.11 16 27 O -0.23 -3.35 10.20 -17.75 -0.18 -3.53 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.43 9.77 7.13 -40.82 -0.29 9.48 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.45 7.41 -51.93 -0.38 1.07 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.23 6.18 -51.93 -0.32 1.91 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.23 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -31.45 368.54 -7.13 -38.58 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.78 Total: 6.48 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -0.13 Total: 13.83 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.24 Total: -62.34 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.51 Total: -19.44 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.45 -7.13 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024532656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.750 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds