Wall clock time and date at job start Tue Mar 31 2020 14:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47386 * 2 1 4 4 C 1.35353 * 116.99783 * 179.97438 * 3 2 1 5 5 N 1.30553 * 125.44230 * 180.02562 * 4 3 2 6 6 C 1.36328 * 108.38483 * 179.97438 * 5 4 3 7 7 C 1.47366 * 126.42046 * 179.97438 * 6 5 4 8 8 O 1.21621 * 120.00568 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99405 * 0.03198 * 7 6 5 10 10 C 1.46498 * 119.99890 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47235 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.69930 * 299.94444 * 11 10 9 13 13 C 1.52763 * 109.51286 * 179.83088 * 11 10 9 14 14 C 1.53039 * 109.38284 * 185.70540 * 13 11 10 15 15 C 1.53037 * 109.53900 * 61.24025 * 14 13 11 16 16 C 1.53193 * 109.31256 * 298.63045 * 15 14 13 17 17 N 1.46928 * 108.77261 * 54.63979 * 16 15 14 18 18 C 1.36932 * 120.63396 * 126.36889 * 17 16 15 19 19 H 1.07995 * 119.99867 * 211.60831 * 18 17 16 20 20 C 1.38811 * 119.99511 * 31.60924 * 18 17 16 21 21 N 1.31619 * 120.00407 * 12.52937 * 20 18 17 22 22 Si 1.86806 * 119.99778 * 192.52792 * 20 18 17 23 23 H 1.48503 * 109.47334 * 270.00217 * 22 20 18 24 24 H 1.48500 * 109.46809 * 29.99840 * 22 20 18 25 25 H 1.48502 * 109.47204 * 149.99981 * 22 20 18 26 26 C 1.35919 * 107.17207 * 0.23956 * 6 5 4 27 27 O 1.34193 * 125.44907 * 359.97438 * 4 3 2 28 28 H 1.08995 * 109.47339 * 300.00567 * 1 2 3 29 29 H 1.09001 * 109.46824 * 60.00077 * 1 2 3 30 30 H 1.08995 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47516 * 239.99614 * 2 1 3 32 32 H 1.09001 * 109.46824 * 119.99923 * 2 1 3 33 33 H 0.97001 * 120.00331 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47588 * 59.99533 * 10 9 7 35 35 H 1.08997 * 109.46833 * 299.99815 * 10 9 7 36 36 H 1.09002 * 109.56636 * 65.66849 * 13 11 10 37 37 H 1.09004 * 109.35761 * 305.61437 * 13 11 10 38 38 H 1.08998 * 109.45979 * 301.21221 * 14 13 11 39 39 H 1.09008 * 109.44872 * 181.25133 * 14 13 11 40 40 H 1.08997 * 109.49524 * 178.68054 * 15 14 13 41 41 H 1.08999 * 109.49644 * 58.58576 * 15 14 13 42 42 H 1.08999 * 109.58505 * 294.84900 * 16 15 14 43 43 H 1.08993 * 109.70098 * 174.49198 * 16 15 14 44 44 H 0.97001 * 119.99788 * 180.02562 * 21 20 18 45 45 H 1.07997 * 126.45797 * 179.72495 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3483 1.5245 0.0005 5 7 3.9595 2.6781 0.0011 6 6 5.3040 2.4523 0.0021 7 6 6.3632 3.4768 0.0025 8 8 7.5326 3.1426 0.0029 9 7 6.0360 4.7843 0.0024 10 6 7.0889 5.8029 0.0022 11 6 6.4525 7.1942 0.0016 12 1 5.8340 7.3149 -0.8878 13 6 7.5497 8.2571 0.0056 14 6 6.9145 9.6422 0.1485 15 6 6.1563 9.7231 1.4753 16 6 5.0387 8.6755 1.4850 17 7 5.6237 7.3574 1.2038 18 6 5.4054 6.3024 2.0491 19 1 6.1626 5.5420 2.1703 20 6 4.2108 6.2105 2.7500 21 7 3.1971 6.9855 2.4274 22 14 4.0420 4.9868 4.1513 23 1 3.5428 3.6926 3.6210 24 1 5.3661 4.7816 4.7915 25 1 3.0829 5.5133 5.1554 26 6 5.4846 1.1051 -0.0033 27 8 4.2630 0.5426 0.0016 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.1033 5.0509 0.0018 34 1 7.7072 5.6862 -0.8878 35 1 7.7073 5.6862 0.8921 36 1 8.1090 8.2080 -0.9287 37 1 8.2235 8.0777 0.8434 38 1 6.2223 9.8110 -0.6764 39 1 7.6949 10.4031 0.1291 40 1 5.7239 10.7174 1.5871 41 1 6.8433 9.5299 2.2993 42 1 4.3025 8.9195 0.7191 43 1 4.5575 8.6606 2.4628 44 1 2.3625 6.9214 2.9175 45 1 6.4309 0.5846 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024532656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:03 Heat of formation + Delta-G solvation = -48.571868 kcal Electronic energy + Delta-G solvation = -28435.721496 eV Core-core repulsion = 24455.387668 eV Total energy + Delta-G solvation = -3980.333828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.52847 -40.72893 -39.97559 -39.24850 -36.07673 -35.68472 -34.88310 -32.92705 -32.31457 -31.66719 -30.59539 -27.84240 -26.76563 -25.00052 -24.44231 -23.79500 -23.28674 -22.19849 -21.50237 -20.71578 -20.07134 -18.66092 -18.61427 -17.97682 -17.40928 -17.28414 -16.80190 -16.59541 -16.09483 -16.05709 -15.69758 -15.33243 -14.96633 -14.77953 -14.58074 -14.42005 -14.05497 -13.95551 -13.61084 -13.59565 -13.45631 -12.86728 -12.84555 -12.70643 -12.56823 -12.49987 -12.32581 -12.04668 -11.83533 -11.79487 -11.76652 -11.50715 -11.36536 -11.08288 -10.95784 -10.51189 -9.97842 -9.68376 -8.52212 -7.82308 -5.27923 0.04521 0.81750 0.95649 1.36180 1.40185 1.45049 1.71020 2.20373 2.34575 2.49393 3.34280 3.43490 3.61835 3.74443 3.88924 3.94169 4.00328 4.10281 4.22420 4.24934 4.29557 4.40020 4.44799 4.57028 4.64365 4.68333 4.75618 4.82429 4.84142 4.89435 5.02362 5.14331 5.16035 5.24615 5.30948 5.38895 5.48981 5.56508 5.64535 5.65530 5.76228 5.87006 6.40210 6.46599 6.69918 7.18389 7.22555 7.90982 8.43507 9.22857 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.004266 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.072432 B = 6561.770976 C = 7608.318372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 O -0.262 6.262 4 C 0.378 3.622 5 N -0.486 5.486 6 C -0.077 4.077 7 C 0.592 3.408 8 O -0.574 6.574 9 N -0.680 5.680 10 C 0.136 3.864 11 C 0.157 3.843 12 H 0.028 0.972 13 C -0.120 4.120 14 C -0.103 4.103 15 C -0.134 4.134 16 C 0.178 3.822 17 N -0.602 5.602 18 C -0.232 4.232 19 H 0.060 0.940 20 C -0.029 4.029 21 N -0.923 5.923 22 Si 0.934 3.066 23 H -0.297 1.297 24 H -0.278 1.278 25 H -0.291 1.291 26 C 0.025 3.975 27 O -0.213 6.213 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.415 0.585 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.047 0.953 42 H -0.003 1.003 43 H 0.050 0.950 44 H 0.246 0.754 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 -10.993 -7.528 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.171 6.171 4 C 0.131 3.869 5 N -0.232 5.232 6 C -0.195 4.195 7 C 0.378 3.622 8 O -0.456 6.456 9 N -0.327 5.327 10 C 0.013 3.987 11 C 0.051 3.949 12 H 0.045 0.955 13 C -0.160 4.160 14 C -0.140 4.140 15 C -0.173 4.173 16 C 0.052 3.948 17 N -0.327 5.327 18 C -0.363 4.363 19 H 0.077 0.923 20 C -0.225 4.225 21 N -0.569 5.569 22 Si 0.765 3.235 23 H -0.225 1.225 24 H -0.204 1.204 25 H -0.217 1.217 26 C -0.047 4.047 27 O -0.104 6.104 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.252 0.748 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.015 0.985 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 0.934 -10.526 -7.453 12.931 hybrid contribution -0.842 -1.125 1.159 1.822 sum 0.093 -11.652 -6.294 13.243 Atomic orbital electron populations 1.21868 0.89799 1.05205 1.03666 1.23473 0.98024 0.77741 1.04195 1.86444 1.08019 1.33519 1.89124 1.23309 0.84235 0.81467 0.97845 1.71148 1.05048 1.23135 1.23875 1.21743 0.89843 0.95189 1.12711 1.16854 0.86170 0.82295 0.76897 1.90729 1.18461 1.82040 1.54413 1.45992 1.12143 1.04659 1.69933 1.21416 0.89487 0.86569 1.01251 1.20832 0.92209 0.92469 0.89346 0.95474 1.21814 0.97174 0.94842 1.02135 1.21349 0.99253 0.96668 0.96759 1.22043 0.98635 0.98693 0.97976 1.20581 0.92070 0.83409 0.98691 1.44253 1.58244 1.06705 1.23455 1.19106 0.97043 1.02379 1.17743 0.92282 1.25449 0.95302 0.99638 1.02153 1.70092 1.02478 1.42472 1.41836 0.85782 0.77121 0.79734 0.80909 1.22452 1.20382 1.21731 1.25602 0.86641 0.91765 1.00720 1.84388 1.15940 1.38354 1.71739 0.91997 0.91206 0.86447 0.89041 0.90048 0.74813 0.89905 0.92802 0.89645 0.92460 0.92624 0.90482 0.91757 0.93409 0.98467 0.93194 0.94472 0.70981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.04 0.70 6.38 71.98 0.46 1.16 16 3 O -0.26 -7.80 10.19 -64.22 -0.65 -8.45 16 4 C 0.38 12.68 8.98 130.43 1.17 13.85 16 5 N -0.49 -19.83 11.10 -419.40 -4.65 -24.48 16 6 C -0.08 -2.86 6.99 40.31 0.28 -2.58 16 7 C 0.59 24.15 7.81 86.65 0.68 24.83 16 8 O -0.57 -23.97 16.89 -4.10 -0.07 -24.04 16 9 N -0.68 -28.85 3.85 -466.43 -1.79 -30.64 16 10 C 0.14 5.26 4.42 86.38 0.38 5.64 16 11 C 0.16 6.19 2.99 44.83 0.13 6.32 16 12 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 13 C -0.12 -3.79 5.35 30.53 0.16 -3.63 16 14 C -0.10 -3.13 5.88 30.62 0.18 -2.95 16 15 C -0.13 -4.92 6.08 30.67 0.19 -4.73 16 16 C 0.18 8.42 5.26 86.36 0.45 8.87 16 17 N -0.60 -28.93 2.98 -676.03 -2.01 -30.95 16 18 C -0.23 -12.39 6.97 84.03 0.59 -11.80 16 19 H 0.06 3.24 5.86 -2.91 -0.02 3.22 16 20 C -0.03 -1.63 5.00 84.86 0.42 -1.20 16 21 N -0.92 -54.40 11.18 21.65 0.24 -54.16 16 22 Si 0.93 47.31 29.57 68.60 2.03 49.34 16 23 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 24 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 26 C 0.03 0.69 11.93 67.28 0.80 1.49 16 27 O -0.21 -5.76 10.20 18.90 0.19 -5.57 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.41 19.68 7.13 -92.71 -0.66 19.02 16 34 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.05 2.24 7.41 -2.39 -0.02 2.22 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.05 2.70 6.18 -2.39 -0.01 2.69 16 44 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.27 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -70.98 368.54 0.27 -70.72 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.34 Total: 24.22 kcal Atomic # 6 Polarization: 27.38 SS G_CDS: 6.64 Total: 34.02 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -8.22 Total: -140.23 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.53 Total: -38.06 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -70.98 0.27 -70.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024532656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.147 kcal (2) G-P(sol) polarization free energy of solvation -70.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds