Wall clock time and date at job start Tue Mar 31 2020 14:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42895 * 109.47213 * 2 1 4 4 C 1.35731 * 117.00083 * 179.97438 * 3 2 1 5 5 C 1.41850 * 126.78613 * 179.97438 * 4 3 2 6 6 C 1.36659 * 103.81236 * 180.02562 * 5 4 3 7 7 C 1.47540 * 126.88158 * 180.25912 * 6 5 4 8 8 O 1.21579 * 119.99940 * 359.70945 * 7 6 5 9 9 N 1.34780 * 120.00231 * 179.70599 * 7 6 5 10 10 C 1.46497 * 120.00223 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47128 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.58524 * 299.91115 * 11 10 9 13 13 C 1.53196 * 109.58658 * 179.48327 * 11 10 9 14 14 C 1.53033 * 109.31300 * 185.57630 * 13 11 10 15 15 C 1.53045 * 109.53789 * 61.36626 * 14 13 11 16 16 C 1.53184 * 109.31243 * 298.63562 * 15 14 13 17 17 N 1.46920 * 108.77892 * 54.63102 * 16 15 14 18 18 C 1.36938 * 120.63273 * 126.36669 * 17 16 15 19 19 H 1.08000 * 120.00507 * 211.05408 * 18 17 16 20 20 C 1.38814 * 119.99586 * 31.05013 * 18 17 16 21 21 N 1.31613 * 120.00345 * 14.18984 * 20 18 17 22 22 Si 1.86809 * 119.99844 * 194.19096 * 20 18 17 23 23 H 1.48493 * 109.47327 * 59.99784 * 22 20 18 24 24 H 1.48501 * 109.47160 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46727 * 299.99737 * 22 20 18 26 26 O 1.34659 * 106.24331 * 359.97438 * 6 5 4 27 27 N 1.20884 * 111.63146 * 359.97438 * 26 6 5 28 28 H 1.09002 * 109.46744 * 60.00101 * 1 2 3 29 29 H 1.08998 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46853 * 299.99985 * 1 2 3 31 31 H 1.09006 * 109.46741 * 239.99934 * 2 1 3 32 32 H 1.09002 * 109.46744 * 119.99898 * 2 1 3 33 33 H 1.08003 * 128.09544 * 0.05212 * 5 4 3 34 34 H 0.97006 * 119.99857 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.47226 * 300.00751 * 10 9 7 36 36 H 1.08998 * 109.47036 * 60.00352 * 10 9 7 37 37 H 1.09003 * 109.49716 * 305.53186 * 13 11 10 38 38 H 1.09007 * 109.49472 * 65.62508 * 13 11 10 39 39 H 1.09002 * 109.46211 * 301.34825 * 14 13 11 40 40 H 1.09003 * 109.44838 * 181.38057 * 14 13 11 41 41 H 1.09002 * 109.49719 * 178.68102 * 15 14 13 42 42 H 1.09004 * 109.49171 * 58.58980 * 15 14 13 43 43 H 1.09003 * 109.58433 * 294.84656 * 16 15 14 44 44 H 1.09003 * 109.70405 * 174.49249 * 16 15 14 45 45 H 0.97001 * 120.00038 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5251 0.0005 5 6 4.0453 2.7626 0.0001 6 6 5.3625 2.3987 0.0004 7 6 6.5303 3.3004 0.0055 8 8 6.3680 4.5053 0.0048 9 7 7.7771 2.7884 0.0111 10 6 8.9366 3.6837 0.0156 11 6 10.2219 2.8536 0.0208 12 1 10.2474 2.2254 0.9111 13 6 11.4363 3.7874 0.0125 14 6 12.7136 2.9554 -0.1226 15 6 12.6862 2.1868 -1.4458 16 6 11.4860 1.2350 -1.4540 17 7 10.2672 2.0083 -1.1800 18 6 9.1940 1.9429 -2.0280 19 1 8.5478 2.7998 -2.1485 20 6 8.9366 0.7750 -2.7329 21 7 9.5360 -0.3457 -2.3910 22 14 7.7394 0.7941 -4.1668 23 1 8.2244 1.7397 -5.2040 24 1 7.6400 -0.5693 -4.7468 25 1 6.4017 1.2270 -3.6889 26 8 5.3813 1.0522 0.0015 27 7 4.2639 0.5910 0.0024 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.6294 3.7594 0.0001 34 1 7.9066 1.8270 0.0113 35 1 8.9139 4.3121 -0.8747 36 1 8.9064 4.3128 0.9051 37 1 11.3600 4.4761 -0.8290 38 1 11.4671 4.3526 0.9441 39 1 12.7767 2.2498 0.7059 40 1 13.5806 3.6158 -0.1041 41 1 13.6067 1.6127 -1.5521 42 1 12.5982 2.8906 -2.2735 43 1 11.6172 0.4748 -0.6839 44 1 11.4034 0.7561 -2.4298 45 1 9.3558 -1.1618 -2.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024557479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:03 Heat of formation + Delta-G solvation = -6.401097 kcal Electronic energy + Delta-G solvation = -28294.196591 eV Core-core repulsion = 24315.691425 eV Total energy + Delta-G solvation = -3978.505166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.10875 -40.85490 -40.11695 -39.29711 -35.89795 -34.87997 -34.58699 -33.31956 -32.28236 -32.03874 -31.61372 -27.88028 -26.80200 -25.24747 -24.51651 -23.92031 -23.62806 -22.24224 -21.73521 -20.74681 -20.04701 -19.10867 -18.27299 -18.02194 -17.38371 -17.11053 -17.01616 -16.92510 -16.13446 -15.73509 -15.65489 -15.36071 -15.05579 -14.80723 -14.65331 -14.50610 -14.11031 -14.03446 -13.62011 -13.56880 -13.44563 -12.98994 -12.84202 -12.81630 -12.56317 -12.39373 -12.30523 -12.17211 -12.05396 -11.76229 -11.52372 -11.47087 -11.06514 -11.03065 -10.97150 -10.51133 -10.49625 -9.97524 -8.53148 -7.82492 -5.27690 -0.37908 0.93018 1.39195 1.43975 1.45744 1.46573 1.52330 1.91467 2.36984 2.49272 2.94976 3.33906 3.58173 3.61627 3.82106 3.88451 3.92060 4.01591 4.08100 4.23826 4.27434 4.31525 4.47823 4.52454 4.58684 4.69521 4.76933 4.77283 4.82903 4.91727 5.04870 5.12005 5.18660 5.28007 5.31174 5.34163 5.50044 5.52768 5.67409 5.77136 5.81585 5.88634 6.37554 6.46396 6.86603 6.99513 7.21618 7.91504 8.44323 9.21812 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.003817 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.008788 B = 7332.979635 C = 8421.468531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 O -0.284 6.284 4 C 0.205 3.795 5 C -0.156 4.156 6 C -0.055 4.055 7 C 0.598 3.402 8 O -0.549 6.549 9 N -0.674 5.674 10 C 0.135 3.865 11 C 0.157 3.843 12 H 0.036 0.964 13 C -0.121 4.121 14 C -0.103 4.103 15 C -0.135 4.135 16 C 0.177 3.823 17 N -0.601 5.601 18 C -0.238 4.238 19 H 0.065 0.935 20 C -0.026 4.026 21 N -0.920 5.920 22 Si 0.929 3.071 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.288 1.288 26 O 0.108 5.892 27 N -0.407 5.407 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.211 0.789 34 H 0.417 0.583 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.000 1.000 44 H 0.048 0.952 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 4.125 7.622 11.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 O -0.192 6.192 4 C 0.007 3.993 5 C -0.178 4.178 6 C -0.121 4.121 7 C 0.381 3.619 8 O -0.429 6.429 9 N -0.322 5.322 10 C 0.012 3.988 11 C 0.051 3.949 12 H 0.053 0.947 13 C -0.160 4.160 14 C -0.141 4.141 15 C -0.174 4.174 16 C 0.052 3.948 17 N -0.326 5.326 18 C -0.369 4.369 19 H 0.083 0.917 20 C -0.223 4.223 21 N -0.566 5.566 22 Si 0.759 3.241 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.214 1.214 26 O 0.044 5.956 27 N -0.133 5.133 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.255 0.745 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.019 0.981 44 H 0.066 0.934 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.975 3.677 7.558 11.586 hybrid contribution -0.733 -0.531 -1.281 1.569 sum -8.708 3.146 6.277 11.186 Atomic orbital electron populations 1.21817 0.89456 1.04744 1.03946 1.23143 0.97915 0.79418 1.02338 1.86217 1.11863 1.31904 1.89179 1.21999 0.86442 0.90469 1.00361 1.22405 0.89373 0.99907 1.06128 1.24184 0.97089 0.84169 1.06654 1.16504 0.81561 0.85735 0.78116 1.90800 1.85439 1.13395 1.53280 1.46056 1.04453 1.12422 1.69314 1.21515 0.83379 0.92003 1.01939 1.20950 0.92801 0.91635 0.89527 0.94655 1.21887 0.94374 0.97568 1.02179 1.21351 0.97469 0.98513 0.96765 1.22045 0.98320 0.99046 0.98003 1.20574 0.84330 0.91202 0.98708 1.44245 1.12543 1.52196 1.23610 1.19181 1.04937 0.94987 1.17755 0.91703 1.25406 0.99897 0.95209 1.01830 1.70079 1.46660 0.98715 1.41103 0.85947 0.80091 0.76058 0.81957 1.21003 1.22333 1.21450 1.85021 1.22858 1.19069 1.68673 1.73999 0.90658 1.22983 1.25622 0.91230 0.87744 0.90764 0.92213 0.91391 0.77236 0.74544 0.92272 0.89187 0.92480 0.89591 0.92489 0.90768 0.91990 0.93529 0.98150 0.93373 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 10.28 71.99 0.74 -1.23 16 2 C 0.05 0.99 6.38 71.99 0.46 1.45 16 3 O -0.28 -7.73 10.21 -90.54 -0.92 -8.66 16 4 C 0.20 6.46 8.00 85.78 0.69 7.14 16 5 C -0.16 -4.74 10.97 22.79 0.25 -4.49 16 6 C -0.05 -1.91 7.29 24.36 0.18 -1.73 16 7 C 0.60 21.85 7.82 86.70 0.68 22.52 16 8 O -0.55 -21.38 16.91 -3.97 -0.07 -21.45 16 9 N -0.67 -24.70 3.84 -466.28 -1.79 -26.49 16 10 C 0.13 4.53 4.43 86.38 0.38 4.92 16 11 C 0.16 5.48 3.01 44.98 0.14 5.62 16 12 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 13 C -0.12 -3.43 5.37 30.67 0.16 -3.27 16 14 C -0.10 -2.90 5.88 30.62 0.18 -2.72 16 15 C -0.14 -4.64 6.08 30.67 0.19 -4.45 16 16 C 0.18 7.84 5.27 86.36 0.46 8.30 16 17 N -0.60 -26.46 2.97 -675.25 -2.01 -28.47 16 18 C -0.24 -11.69 6.97 84.03 0.59 -11.10 16 19 H 0.07 3.22 5.86 -2.91 -0.02 3.21 16 20 C -0.03 -1.38 4.96 84.86 0.42 -0.96 16 21 N -0.92 -51.04 11.24 21.65 0.24 -50.80 16 22 Si 0.93 44.62 29.58 68.60 2.03 46.65 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 O 0.11 4.02 11.03 65.66 0.72 4.74 16 27 N -0.41 -14.41 11.50 -172.02 -1.98 -16.39 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.21 5.22 8.06 -2.91 -0.02 5.19 16 34 H 0.42 16.62 7.21 -92.70 -0.67 15.95 16 35 H 0.06 2.18 7.42 -2.39 -0.02 2.16 16 36 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.05 2.47 6.19 -2.39 -0.01 2.46 16 45 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -61.08 368.34 2.07 -59.01 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.34 Total: 21.85 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 5.50 Total: 20.00 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -5.53 Total: -122.14 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.27 Total: -25.37 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -61.08 2.07 -59.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024557479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.611 kcal (2) G-P(sol) polarization free energy of solvation -61.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds