Wall clock time and date at job start Tue Mar 31 2020 14:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35731 * 116.99804 * 2 1 4 4 C 1.41857 * 126.78222 * 180.32763 * 3 2 1 5 5 C 1.36662 * 103.80830 * 180.13917 * 4 3 2 6 6 C 1.47546 * 126.88200 * 179.87694 * 5 4 3 7 7 O 1.21587 * 119.99722 * 359.70969 * 6 5 4 8 8 N 1.34777 * 120.00292 * 179.70837 * 6 5 4 9 9 C 1.46493 * 119.99782 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47464 * 35.00251 * 9 8 6 11 11 C 1.53000 * 109.47453 * 275.00158 * 9 8 6 12 12 C 1.53005 * 109.46927 * 154.99976 * 9 8 6 13 13 H 1.08996 * 109.49867 * 305.06584 * 12 9 8 14 14 C 1.53041 * 109.49609 * 185.00029 * 12 9 8 15 15 C 1.53050 * 109.53333 * 178.68713 * 14 12 9 16 16 C 1.53187 * 109.31442 * 61.36497 * 15 14 12 17 17 N 1.46923 * 108.77767 * 305.36253 * 16 15 14 18 18 C 1.36931 * 120.63418 * 233.59224 * 17 16 15 19 19 H 1.07999 * 120.00422 * 151.85070 * 18 17 16 20 20 C 1.38819 * 119.99703 * 331.84223 * 18 17 16 21 21 N 1.31616 * 119.99988 * 343.07039 * 20 18 17 22 22 Si 1.86799 * 119.99793 * 163.07074 * 20 18 17 23 23 H 1.48501 * 109.47015 * 90.00111 * 22 20 18 24 24 H 1.48503 * 109.47008 * 209.99917 * 22 20 18 25 25 H 1.48495 * 109.47344 * 330.00172 * 22 20 18 26 26 C 1.46927 * 118.73753 * 53.60966 * 17 16 15 27 27 O 1.34659 * 106.24404 * 359.61187 * 5 4 3 28 28 N 1.20878 * 111.62934 * 0.26704 * 27 5 4 29 29 H 1.08999 * 109.47309 * 60.00183 * 1 2 3 30 30 H 1.09006 * 109.47342 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47181 * 299.99765 * 1 2 3 32 32 H 1.08000 * 128.09713 * 0.02562 * 4 3 2 33 33 H 0.96998 * 119.99944 * 359.97438 * 8 6 5 34 34 H 1.08997 * 109.47250 * 59.99998 * 11 9 8 35 35 H 1.08999 * 109.47117 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.46505 * 300.00074 * 11 9 8 37 37 H 1.09001 * 109.45854 * 298.70119 * 14 12 9 38 38 H 1.08994 * 109.46385 * 58.66456 * 14 12 9 39 39 H 1.09003 * 109.49439 * 181.31750 * 15 14 12 40 40 H 1.08998 * 109.49392 * 301.40764 * 15 14 12 41 41 H 1.09004 * 109.58634 * 185.57706 * 16 15 14 42 42 H 1.09000 * 109.58649 * 65.15355 * 16 15 14 43 43 H 0.96999 * 120.00068 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.59027 * 186.60748 * 26 17 16 45 45 H 1.09005 * 109.58876 * 66.17733 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4430 1.4505 -0.0065 5 6 3.5390 2.8137 -0.0002 6 6 4.7784 3.6142 -0.0005 7 8 5.8603 3.0595 -0.0015 8 7 4.7113 4.9603 0.0003 9 6 5.9419 5.7550 0.0006 10 1 6.7037 5.2453 -0.5893 11 6 6.4389 5.9252 1.4376 12 6 5.6610 7.1303 -0.6083 13 1 5.2226 7.0071 -1.5985 14 6 6.9699 7.9151 -0.7230 15 6 6.6948 9.2783 -1.3621 16 6 5.7326 10.0705 -0.4715 17 7 4.5296 9.2603 -0.2371 18 6 3.2852 9.7650 -0.5053 19 1 2.4787 9.0990 -0.7743 20 6 3.0604 11.1329 -0.4313 21 7 3.9145 11.9067 0.2043 22 14 1.5456 11.8751 -1.2337 23 1 0.4257 11.8894 -0.2586 24 1 1.8443 13.2644 -1.6648 25 1 1.1626 11.0616 -2.4155 26 6 4.6870 7.8982 0.2909 27 8 2.2758 3.2802 0.0003 28 7 1.4685 2.3805 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.2441 0.7262 -0.0128 33 1 3.8481 5.4029 0.0007 34 1 6.6390 4.9455 1.8713 35 1 7.3543 6.5169 1.4377 36 1 5.6770 6.4350 2.0274 37 1 7.3953 8.0588 0.2701 38 1 7.6736 7.3590 -1.3424 39 1 7.6308 9.8273 -1.4649 40 1 6.2465 9.1353 -2.3452 41 1 5.4558 11.0001 -0.9688 42 1 6.2148 10.2925 0.4805 43 1 3.7572 12.8625 0.2563 44 1 3.7204 7.3945 0.2966 45 1 5.0840 7.9431 1.3051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025389686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:21 Heat of formation + Delta-G solvation = 12.841458 kcal Electronic energy + Delta-G solvation = -27731.099428 eV Core-core repulsion = 23753.428682 eV Total energy + Delta-G solvation = -3977.670746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.23004 -40.05830 -39.19244 -38.11633 -35.37658 -33.49548 -33.20106 -32.23373 -30.83444 -30.47214 -28.16742 -27.98338 -25.32420 -25.02355 -23.62528 -23.22314 -22.18097 -21.09882 -20.37952 -19.32624 -18.50688 -18.20315 -17.14328 -16.80369 -16.22863 -16.17786 -15.88223 -15.21574 -15.01950 -14.88294 -14.42006 -14.24313 -13.85388 -13.83826 -13.49289 -13.12862 -12.63145 -12.58876 -12.41373 -12.30625 -12.24410 -11.87330 -11.74406 -11.64768 -11.01965 -10.93837 -10.63139 -10.51417 -10.46578 -10.22419 -10.13236 -10.10021 -9.88920 -9.66659 -9.64239 -9.42083 -9.13056 -8.47482 -6.67616 -5.80686 -3.23275 0.52549 1.81777 2.32638 2.38383 2.82099 3.21041 3.36326 3.43793 3.45921 3.80473 4.46498 4.47220 4.66055 4.71359 4.78411 4.91245 4.97693 5.11253 5.16049 5.34382 5.37816 5.38385 5.52733 5.63974 5.66477 5.79822 5.93719 6.05742 6.18126 6.21068 6.25899 6.41781 6.50035 6.56796 6.56845 6.67915 6.74411 6.84056 6.94814 7.25063 7.38687 7.65966 7.76635 7.77871 7.89603 8.43147 9.19469 9.82896 10.39323 11.27628 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.003172 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.102469 B = 8824.625524 C =10633.866043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.202 3.798 4 C -0.157 4.157 5 C -0.054 4.054 6 C 0.604 3.396 7 O -0.514 6.514 8 N -0.700 5.700 9 C 0.148 3.852 10 H 0.087 0.913 11 C -0.167 4.167 12 C -0.114 4.114 13 H 0.074 0.926 14 C -0.100 4.100 15 C -0.143 4.143 16 C 0.169 3.831 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.149 3.851 27 O 0.122 5.878 28 N -0.387 5.387 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.190 0.810 33 H 0.411 0.589 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.048 0.952 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.244 -19.091 -0.173 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.005 3.995 4 C -0.180 4.180 5 C -0.120 4.120 6 C 0.386 3.614 7 O -0.391 6.391 8 N -0.351 5.351 9 C 0.045 3.955 10 H 0.106 0.894 11 C -0.225 4.225 12 C -0.135 4.135 13 H 0.093 0.907 14 C -0.138 4.138 15 C -0.182 4.182 16 C 0.044 3.956 17 N -0.313 5.313 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.023 3.977 27 O 0.055 5.945 28 N -0.110 5.110 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.207 0.793 33 H 0.247 0.753 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.157 -19.168 -0.146 19.170 hybrid contribution -0.894 0.217 -0.387 0.998 sum -1.051 -18.952 -0.534 18.988 Atomic orbital electron populations 1.23114 0.76494 1.04276 1.02608 1.86212 1.22825 1.20361 1.89402 1.21903 0.90643 0.85867 1.01116 1.22157 0.94391 0.94933 1.06489 1.24170 0.87187 0.93874 1.06792 1.16476 0.84946 0.82260 0.77681 1.90871 1.26379 1.71336 1.50468 1.46147 1.11790 1.04865 1.72272 1.21205 0.85197 0.91507 0.97627 0.89447 1.22283 1.02250 1.01878 0.96093 1.21989 0.98693 0.92038 1.00791 0.90711 1.21421 0.95305 0.96479 1.00601 1.22183 0.99666 0.95933 1.00396 1.20791 0.85078 0.94338 0.95415 1.44008 1.02764 1.10508 1.73974 1.19154 0.88072 0.90912 1.40241 0.91737 1.25030 0.97884 0.97461 0.99130 1.70031 1.37514 1.04460 1.42575 0.86334 0.82741 0.78467 0.79457 1.21388 1.21590 1.20474 1.21020 0.95572 0.87128 0.94017 1.84995 1.11770 1.29563 1.68189 1.74028 1.15866 0.96668 1.24475 0.92045 0.87481 0.92031 0.79287 0.75273 0.92700 0.91003 0.91283 0.92153 0.93444 0.93187 0.92772 0.89615 0.96422 0.93637 0.93314 0.95536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.30 16 2 O -0.28 -2.91 10.57 -18.90 -0.20 -3.11 16 3 C 0.20 2.35 8.00 -16.72 -0.13 2.22 16 4 C -0.16 -1.73 10.97 -38.77 -0.43 -2.15 16 5 C -0.05 -0.64 7.29 -36.36 -0.26 -0.90 16 6 C 0.60 7.80 7.78 -12.47 -0.10 7.71 16 7 O -0.51 -7.80 16.57 5.29 0.09 -7.71 16 8 N -0.70 -8.73 5.01 -54.85 -0.27 -9.01 16 9 C 0.15 1.96 2.35 -67.93 -0.16 1.80 16 10 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 11 C -0.17 -2.12 8.76 37.16 0.33 -1.80 16 12 C -0.11 -1.76 2.27 -90.49 -0.21 -1.97 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.10 -1.54 4.89 -26.68 -0.13 -1.67 16 15 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 16 C 0.17 3.87 5.30 -3.71 -0.02 3.85 16 17 N -0.59 -13.97 2.99 -172.32 -0.52 -14.49 16 18 C -0.25 -6.71 9.58 -15.06 -0.14 -6.86 16 19 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 20 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -25.59 11.20 55.49 0.62 -24.97 16 22 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 C 0.15 2.81 5.26 -3.71 -0.02 2.79 16 27 O 0.12 1.51 11.03 15.51 0.17 1.68 16 28 N -0.39 -4.89 11.50 30.47 0.35 -4.54 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.41 4.87 7.10 -40.82 -0.29 4.58 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.87 6.59 -51.93 -0.34 0.53 16 36 H 0.07 0.92 6.23 -51.93 -0.32 0.59 16 37 H 0.06 0.91 6.63 -51.93 -0.34 0.57 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.05 0.88 6.75 -51.93 -0.35 0.53 16 45 H 0.03 0.51 6.06 -51.93 -0.31 0.20 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -30.41 364.49 -6.18 -36.60 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.45 Total: 2.25 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -0.44 Total: 1.58 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.18 Total: -53.01 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.06 Total: -9.15 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.41 -6.18 -36.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025389686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.437 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds